HEADER APOPTOSIS 18-DEC-18 6Q9Q TITLE HDMX (14-111; C17S) COMPLEXED WITH COMPOUND 13 AT 2.1A; STRUCTURAL TITLE 2 STATES OF HDM2 AND HDMX: X-RAY ELUCIDATION OF ADAPTATIONS AND BINDING TITLE 3 INTERACTIONS FOR DIFFERENT CHEMICAL COMPOUND CLASSES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MDM4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, P53 BINDING DOMAIN; COMPND 5 SYNONYM: DOUBLE MINUTE 4 PROTEIN,MDM2-LIKE P53-BINDING PROTEIN, COMPND 6 PROTEIN MDMX,P53-BINDING PROTEIN MDM4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MDM4, MDMX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-DERIVED VECTOR KEYWDS HDMX, MDM4, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR J.KALLEN REVDAT 3 24-JAN-24 6Q9Q 1 REMARK REVDAT 2 24-JUL-19 6Q9Q 1 JRNL REVDAT 1 15-MAY-19 6Q9Q 0 JRNL AUTH J.KALLEN,A.IZAAC,S.CHAU,E.WIRTH,J.SCHOEPFER,R.MAH, JRNL AUTH 2 A.SCHLAPBACH,S.STUTZ,A.VAUPEL,V.GUAGNANO,K.MASUYA, JRNL AUTH 3 T.M.STACHYRA,B.SALEM,P.CHENE,F.GESSIER,P.HOLZER,P.FURET JRNL TITL STRUCTURAL STATES OF HDM2 AND HDMX: X-RAY ELUCIDATION OF JRNL TITL 2 ADAPTATIONS AND BINDING INTERACTIONS FOR DIFFERENT CHEMICAL JRNL TITL 3 COMPOUND CLASSES. JRNL REF CHEMMEDCHEM V. 14 1305 2019 JRNL REFN ESSN 1860-7187 JRNL PMID 31066983 JRNL DOI 10.1002/CMDC.201900201 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 29783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1583 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2685 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 314 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 2.36000 REMARK 3 B33 (A**2) : -2.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.583 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6Q9Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013520. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31374 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3FE7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.6M AMSO4, 4% W/V 18-CROWN-ETHER, REMARK 280 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.40050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.68350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.40050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.68350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 13 REMARK 465 PRO A 14 REMARK 465 ASP A 15 REMARK 465 SER A 16 REMARK 465 ALA A 17 REMARK 465 SER A 18 REMARK 465 ARG A 19 REMARK 465 ILE A 20 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 GLY A 23 REMARK 465 GLN A 24 REMARK 465 ILE A 25 REMARK 465 LEU A 110 REMARK 465 ALA A 111 REMARK 465 THR A 112 REMARK 465 GLY B 13 REMARK 465 PRO B 14 REMARK 465 ASP B 15 REMARK 465 SER B 16 REMARK 465 ALA B 17 REMARK 465 SER B 18 REMARK 465 ARG B 19 REMARK 465 ILE B 20 REMARK 465 SER B 21 REMARK 465 PRO B 22 REMARK 465 GLY B 23 REMARK 465 GLN B 24 REMARK 465 ILE B 25 REMARK 465 LEU B 110 REMARK 465 ALA B 111 REMARK 465 THR B 112 REMARK 465 GLY C 13 REMARK 465 PRO C 14 REMARK 465 ASP C 15 REMARK 465 SER C 16 REMARK 465 ALA C 17 REMARK 465 SER C 18 REMARK 465 ARG C 19 REMARK 465 ILE C 20 REMARK 465 SER C 21 REMARK 465 PRO C 22 REMARK 465 GLY C 23 REMARK 465 GLN C 24 REMARK 465 ILE C 25 REMARK 465 THR C 109 REMARK 465 LEU C 110 REMARK 465 ALA C 111 REMARK 465 THR C 112 REMARK 465 GLY D 13 REMARK 465 PRO D 14 REMARK 465 ASP D 15 REMARK 465 SER D 16 REMARK 465 ALA D 17 REMARK 465 SER D 18 REMARK 465 ARG D 19 REMARK 465 ILE D 20 REMARK 465 SER D 21 REMARK 465 PRO D 22 REMARK 465 GLY D 23 REMARK 465 GLN D 24 REMARK 465 ILE D 25 REMARK 465 LEU D 110 REMARK 465 ALA D 111 REMARK 465 THR D 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 46 14.74 -143.78 REMARK 500 GLN B 72 1.26 -68.22 REMARK 500 VAL B 93 -6.35 -59.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 345 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH D 323 DISTANCE = 5.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HUE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O4B A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HUE B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O4B B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O4B B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HUE C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O4B C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HUE D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O4B D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Q9L RELATED DB: PDB DBREF 6Q9Q A 15 112 UNP O15151 MDM4_HUMAN 14 111 DBREF 6Q9Q B 15 112 UNP O15151 MDM4_HUMAN 14 111 DBREF 6Q9Q C 15 112 UNP O15151 MDM4_HUMAN 14 111 DBREF 6Q9Q D 15 112 UNP O15151 MDM4_HUMAN 14 111 SEQADV 6Q9Q GLY A 13 UNP O15151 EXPRESSION TAG SEQADV 6Q9Q PRO A 14 UNP O15151 EXPRESSION TAG SEQADV 6Q9Q SER A 18 UNP O15151 CYS 17 ENGINEERED MUTATION SEQADV 6Q9Q GLY B 13 UNP O15151 EXPRESSION TAG SEQADV 6Q9Q PRO B 14 UNP O15151 EXPRESSION TAG SEQADV 6Q9Q SER B 18 UNP O15151 CYS 17 ENGINEERED MUTATION SEQADV 6Q9Q GLY C 13 UNP O15151 EXPRESSION TAG SEQADV 6Q9Q PRO C 14 UNP O15151 EXPRESSION TAG SEQADV 6Q9Q SER C 18 UNP O15151 CYS 17 ENGINEERED MUTATION SEQADV 6Q9Q GLY D 13 UNP O15151 EXPRESSION TAG SEQADV 6Q9Q PRO D 14 UNP O15151 EXPRESSION TAG SEQADV 6Q9Q SER D 18 UNP O15151 CYS 17 ENGINEERED MUTATION SEQRES 1 A 100 GLY PRO ASP SER ALA SER ARG ILE SER PRO GLY GLN ILE SEQRES 2 A 100 ASN GLN VAL ARG PRO LYS LEU PRO LEU LEU LYS ILE LEU SEQRES 3 A 100 HIS ALA ALA GLY ALA GLN GLY GLU MET PHE THR VAL LYS SEQRES 4 A 100 GLU VAL MET HIS TYR LEU GLY GLN TYR ILE MET VAL LYS SEQRES 5 A 100 GLN LEU TYR ASP GLN GLN GLU GLN HIS MET VAL TYR CYS SEQRES 6 A 100 GLY GLY ASP LEU LEU GLY GLU LEU LEU GLY ARG GLN SER SEQRES 7 A 100 PHE SER VAL LYS ASP PRO SER PRO LEU TYR ASP MET LEU SEQRES 8 A 100 ARG LYS ASN LEU VAL THR LEU ALA THR SEQRES 1 B 100 GLY PRO ASP SER ALA SER ARG ILE SER PRO GLY GLN ILE SEQRES 2 B 100 ASN GLN VAL ARG PRO LYS LEU PRO LEU LEU LYS ILE LEU SEQRES 3 B 100 HIS ALA ALA GLY ALA GLN GLY GLU MET PHE THR VAL LYS SEQRES 4 B 100 GLU VAL MET HIS TYR LEU GLY GLN TYR ILE MET VAL LYS SEQRES 5 B 100 GLN LEU TYR ASP GLN GLN GLU GLN HIS MET VAL TYR CYS SEQRES 6 B 100 GLY GLY ASP LEU LEU GLY GLU LEU LEU GLY ARG GLN SER SEQRES 7 B 100 PHE SER VAL LYS ASP PRO SER PRO LEU TYR ASP MET LEU SEQRES 8 B 100 ARG LYS ASN LEU VAL THR LEU ALA THR SEQRES 1 C 100 GLY PRO ASP SER ALA SER ARG ILE SER PRO GLY GLN ILE SEQRES 2 C 100 ASN GLN VAL ARG PRO LYS LEU PRO LEU LEU LYS ILE LEU SEQRES 3 C 100 HIS ALA ALA GLY ALA GLN GLY GLU MET PHE THR VAL LYS SEQRES 4 C 100 GLU VAL MET HIS TYR LEU GLY GLN TYR ILE MET VAL LYS SEQRES 5 C 100 GLN LEU TYR ASP GLN GLN GLU GLN HIS MET VAL TYR CYS SEQRES 6 C 100 GLY GLY ASP LEU LEU GLY GLU LEU LEU GLY ARG GLN SER SEQRES 7 C 100 PHE SER VAL LYS ASP PRO SER PRO LEU TYR ASP MET LEU SEQRES 8 C 100 ARG LYS ASN LEU VAL THR LEU ALA THR SEQRES 1 D 100 GLY PRO ASP SER ALA SER ARG ILE SER PRO GLY GLN ILE SEQRES 2 D 100 ASN GLN VAL ARG PRO LYS LEU PRO LEU LEU LYS ILE LEU SEQRES 3 D 100 HIS ALA ALA GLY ALA GLN GLY GLU MET PHE THR VAL LYS SEQRES 4 D 100 GLU VAL MET HIS TYR LEU GLY GLN TYR ILE MET VAL LYS SEQRES 5 D 100 GLN LEU TYR ASP GLN GLN GLU GLN HIS MET VAL TYR CYS SEQRES 6 D 100 GLY GLY ASP LEU LEU GLY GLU LEU LEU GLY ARG GLN SER SEQRES 7 D 100 PHE SER VAL LYS ASP PRO SER PRO LEU TYR ASP MET LEU SEQRES 8 D 100 ARG LYS ASN LEU VAL THR LEU ALA THR HET HUE A 201 47 HET O4B A 202 18 HET SO4 A 203 5 HET HUE B 201 47 HET O4B B 202 18 HET O4B B 203 18 HET SO4 B 204 5 HET GOL B 205 6 HET HUE C 201 47 HET O4B C 202 18 HET SO4 C 203 5 HET HUE D 201 47 HET O4B D 202 18 HET SO4 D 203 5 HET SO4 D 204 5 HET SO4 D 205 5 HETNAM HUE 6-CHLORANYL-3-[3-[(1~{S})-1-(4-CHLOROPHENYL)ETHYL]-5- HETNAM 2 HUE PHENYL-IMIDAZOL-4-YL]-~{N}-[2-(4-CYCLOHEXYLPIPERAZIN- HETNAM 3 HUE 1-YL)ETHYL]-1~{H}-INDOLE-2-CARBOXAMIDE HETNAM O4B 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 HUE 4(C38 H42 CL2 N6 O) FORMUL 6 O4B 5(C12 H24 O6) FORMUL 7 SO4 6(O4 S 2-) FORMUL 12 GOL C3 H8 O3 FORMUL 21 HOH *150(H2 O) HELIX 1 AA1 LYS A 31 ALA A 41 1 11 HELIX 2 AA2 VAL A 50 LYS A 64 1 15 HELIX 3 AA3 ASP A 80 GLY A 87 1 8 HELIX 4 AA4 PRO A 96 LYS A 105 1 10 HELIX 5 AA5 LYS B 31 ALA B 41 1 11 HELIX 6 AA6 THR B 49 LYS B 64 1 16 HELIX 7 AA7 ASP B 80 GLY B 87 1 8 HELIX 8 AA8 PRO B 96 ASN B 106 1 11 HELIX 9 AA9 LYS C 31 ALA C 41 1 11 HELIX 10 AB1 THR C 49 LYS C 64 1 16 HELIX 11 AB2 ASP C 80 GLY C 87 1 8 HELIX 12 AB3 PRO C 96 ASN C 106 1 11 HELIX 13 AB4 LYS D 31 ALA D 41 1 11 HELIX 14 AB5 THR D 49 LYS D 64 1 16 HELIX 15 AB6 ASP D 80 GLY D 87 1 8 HELIX 16 AB7 PRO D 96 ASN D 106 1 11 SHEET 1 AA1 3 PHE A 48 THR A 49 0 SHEET 2 AA1 3 GLN A 27 PRO A 30 -1 N VAL A 28 O PHE A 48 SHEET 3 AA1 3 LEU A 107 VAL A 108 -1 O VAL A 108 N ARG A 29 SHEET 1 AA2 2 MET A 74 TYR A 76 0 SHEET 2 AA2 2 SER A 90 SER A 92 -1 O PHE A 91 N VAL A 75 SHEET 1 AA3 2 ARG B 29 PRO B 30 0 SHEET 2 AA3 2 LEU B 107 VAL B 108 -1 O VAL B 108 N ARG B 29 SHEET 1 AA4 2 MET B 74 VAL B 75 0 SHEET 2 AA4 2 PHE B 91 SER B 92 -1 O PHE B 91 N VAL B 75 SHEET 1 AA5 2 ARG C 29 PRO C 30 0 SHEET 2 AA5 2 LEU C 107 VAL C 108 -1 O VAL C 108 N ARG C 29 SHEET 1 AA6 2 MET C 74 TYR C 76 0 SHEET 2 AA6 2 SER C 90 SER C 92 -1 O PHE C 91 N VAL C 75 SHEET 1 AA7 2 ARG D 29 PRO D 30 0 SHEET 2 AA7 2 LEU D 107 VAL D 108 -1 O VAL D 108 N ARG D 29 SHEET 1 AA8 2 MET D 74 TYR D 76 0 SHEET 2 AA8 2 SER D 90 SER D 92 -1 O PHE D 91 N VAL D 75 SITE 1 AC1 12 MET A 54 GLY A 58 ILE A 61 MET A 62 SITE 2 AC1 12 TYR A 67 GLN A 72 VAL A 93 PRO A 96 SITE 3 AC1 12 LEU A 99 HOH A 317 HOH A 318 HIS B 55 SITE 1 AC2 5 LYS A 36 LEU A 81 GLN B 65 LEU B 66 SITE 2 AC2 5 TYR B 76 SITE 1 AC3 6 ILE A 37 ALA A 40 TYR A 60 LYS A 64 SITE 2 AC3 6 HOH A 309 HOH A 325 SITE 1 AC4 14 MET B 54 LEU B 57 GLY B 58 ILE B 61 SITE 2 AC4 14 MET B 62 GLN B 72 PHE B 91 VAL B 93 SITE 3 AC4 14 PRO B 96 LEU B 99 HOH B 301 HOH B 326 SITE 4 AC4 14 SER C 97 TYR C 100 SITE 1 AC5 4 LYS B 36 GLN D 65 LEU D 66 TYR D 76 SITE 1 AC6 6 HIS B 39 GLY B 42 GLN B 44 HOH B 320 SITE 2 AC6 6 GLU D 71 MET D 74 SITE 1 AC7 4 THR B 49 VAL B 50 LYS B 51 ARG C 104 SITE 1 AC8 5 HOH A 312 GLY B 45 GLU B 46 MET B 47 SITE 2 AC8 5 ARG D 88 SITE 1 AC9 11 LYS B 94 MET C 54 GLY C 58 ILE C 61 SITE 2 AC9 11 TYR C 67 GLN C 72 VAL C 93 PRO C 96 SITE 3 AC9 11 LEU C 99 TYR C 100 HOH C 315 SITE 1 AD1 4 GLN A 65 LEU A 66 TYR A 76 LYS C 36 SITE 1 AD2 4 ARG A 88 GLY C 45 GLU C 46 MET C 47 SITE 1 AD3 12 ALA D 41 MET D 54 GLY D 58 ILE D 61 SITE 2 AD3 12 MET D 62 TYR D 67 GLN D 72 VAL D 93 SITE 3 AD3 12 PRO D 96 LEU D 99 SO4 D 203 HOH D 310 SITE 1 AD4 5 GLN C 65 LEU C 66 LEU D 32 LYS D 36 SITE 2 AD4 5 LEU D 81 SITE 1 AD5 4 HIS D 55 TYR D 56 GLN D 59 HUE D 201 SITE 1 AD6 5 LYS D 36 ILE D 37 ALA D 40 TYR D 60 SITE 2 AD6 5 LYS D 64 SITE 1 AD7 4 GLY D 45 GLU D 46 MET D 47 HOH D 303 CRYST1 118.801 75.367 62.773 90.00 93.07 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008417 0.000000 0.000451 0.00000 SCALE2 0.000000 0.013268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015953 0.00000 CONECT 2690 2691 2701 2711 CONECT 2691 2690 2712 CONECT 2692 2693 2722 CONECT 2693 2692 2694 2723 CONECT 2694 2693 2695 CONECT 2695 2694 2721 CONECT 2696 2714 2724 2725 CONECT 2697 2698 2725 CONECT 2698 2697 2726 CONECT 2699 2726 2727 CONECT 2700 2701 2716 CONECT 2701 2690 2700 CONECT 2702 2704 2715 2717 CONECT 2703 2717 2718 CONECT 2704 2702 2705 2718 CONECT 2705 2704 2706 2710 CONECT 2706 2705 2707 CONECT 2707 2706 2708 CONECT 2708 2707 2709 CONECT 2709 2708 2710 CONECT 2710 2705 2709 CONECT 2711 2690 CONECT 2712 2691 2713 2716 CONECT 2713 2712 2714 CONECT 2714 2696 2713 2715 CONECT 2715 2702 2714 2716 CONECT 2716 2700 2712 2715 CONECT 2717 2702 2703 2719 CONECT 2718 2703 2704 CONECT 2719 2717 2720 2721 CONECT 2720 2719 CONECT 2721 2695 2719 2722 CONECT 2722 2692 2721 CONECT 2723 2693 CONECT 2724 2696 CONECT 2725 2696 2697 CONECT 2726 2698 2699 2730 CONECT 2727 2699 2728 CONECT 2728 2727 2729 2731 CONECT 2729 2728 2730 CONECT 2730 2726 2729 CONECT 2731 2728 2732 2736 CONECT 2732 2731 2733 CONECT 2733 2732 2734 CONECT 2734 2733 2735 CONECT 2735 2734 2736 CONECT 2736 2731 2735 CONECT 2737 2738 2754 CONECT 2738 2737 2739 CONECT 2739 2738 2740 CONECT 2740 2739 2741 CONECT 2741 2740 2742 CONECT 2742 2741 2743 CONECT 2743 2742 2744 CONECT 2744 2743 2745 CONECT 2745 2744 2746 CONECT 2746 2745 2747 CONECT 2747 2746 2748 CONECT 2748 2747 2749 CONECT 2749 2748 2750 CONECT 2750 2749 2751 CONECT 2751 2750 2752 CONECT 2752 2751 2753 CONECT 2753 2752 2754 CONECT 2754 2737 2753 CONECT 2755 2756 2757 2758 2759 CONECT 2756 2755 CONECT 2757 2755 CONECT 2758 2755 CONECT 2759 2755 CONECT 2760 2761 2771 2781 CONECT 2761 2760 2782 CONECT 2762 2763 2792 CONECT 2763 2762 2764 2793 CONECT 2764 2763 2765 CONECT 2765 2764 2791 CONECT 2766 2784 2794 2795 CONECT 2767 2768 2795 CONECT 2768 2767 2796 CONECT 2769 2796 2797 CONECT 2770 2771 2786 CONECT 2771 2760 2770 CONECT 2772 2774 2785 2787 CONECT 2773 2787 2788 CONECT 2774 2772 2775 2788 CONECT 2775 2774 2776 2780 CONECT 2776 2775 2777 CONECT 2777 2776 2778 CONECT 2778 2777 2779 CONECT 2779 2778 2780 CONECT 2780 2775 2779 CONECT 2781 2760 CONECT 2782 2761 2783 2786 CONECT 2783 2782 2784 CONECT 2784 2766 2783 2785 CONECT 2785 2772 2784 2786 CONECT 2786 2770 2782 2785 CONECT 2787 2772 2773 2789 CONECT 2788 2773 2774 CONECT 2789 2787 2790 2791 CONECT 2790 2789 CONECT 2791 2765 2789 2792 CONECT 2792 2762 2791 CONECT 2793 2763 CONECT 2794 2766 CONECT 2795 2766 2767 CONECT 2796 2768 2769 2800 CONECT 2797 2769 2798 CONECT 2798 2797 2799 2801 CONECT 2799 2798 2800 CONECT 2800 2796 2799 CONECT 2801 2798 2802 2806 CONECT 2802 2801 2803 CONECT 2803 2802 2804 CONECT 2804 2803 2805 CONECT 2805 2804 2806 CONECT 2806 2801 2805 CONECT 2807 2808 2824 CONECT 2808 2807 2809 CONECT 2809 2808 2810 CONECT 2810 2809 2811 CONECT 2811 2810 2812 CONECT 2812 2811 2813 CONECT 2813 2812 2814 CONECT 2814 2813 2815 CONECT 2815 2814 2816 CONECT 2816 2815 2817 CONECT 2817 2816 2818 CONECT 2818 2817 2819 CONECT 2819 2818 2820 CONECT 2820 2819 2821 CONECT 2821 2820 2822 CONECT 2822 2821 2823 CONECT 2823 2822 2824 CONECT 2824 2807 2823 CONECT 2825 2826 2842 CONECT 2826 2825 2827 CONECT 2827 2826 2828 CONECT 2828 2827 2829 CONECT 2829 2828 2830 CONECT 2830 2829 2831 CONECT 2831 2830 2832 CONECT 2832 2831 2833 CONECT 2833 2832 2834 CONECT 2834 2833 2835 CONECT 2835 2834 2836 CONECT 2836 2835 2837 CONECT 2837 2836 2838 CONECT 2838 2837 2839 CONECT 2839 2838 2840 CONECT 2840 2839 2841 CONECT 2841 2840 2842 CONECT 2842 2825 2841 CONECT 2843 2844 2845 2846 2847 CONECT 2844 2843 CONECT 2845 2843 CONECT 2846 2843 CONECT 2847 2843 CONECT 2848 2849 2850 CONECT 2849 2848 CONECT 2850 2848 2851 2852 CONECT 2851 2850 CONECT 2852 2850 2853 CONECT 2853 2852 CONECT 2854 2855 2865 2875 CONECT 2855 2854 2876 CONECT 2856 2857 2886 CONECT 2857 2856 2858 2887 CONECT 2858 2857 2859 CONECT 2859 2858 2885 CONECT 2860 2878 2888 2889 CONECT 2861 2862 2889 CONECT 2862 2861 2890 CONECT 2863 2890 2891 CONECT 2864 2865 2880 CONECT 2865 2854 2864 CONECT 2866 2868 2879 2881 CONECT 2867 2881 2882 CONECT 2868 2866 2869 2882 CONECT 2869 2868 2870 2874 CONECT 2870 2869 2871 CONECT 2871 2870 2872 CONECT 2872 2871 2873 CONECT 2873 2872 2874 CONECT 2874 2869 2873 CONECT 2875 2854 CONECT 2876 2855 2877 2880 CONECT 2877 2876 2878 CONECT 2878 2860 2877 2879 CONECT 2879 2866 2878 2880 CONECT 2880 2864 2876 2879 CONECT 2881 2866 2867 2883 CONECT 2882 2867 2868 CONECT 2883 2881 2884 2885 CONECT 2884 2883 CONECT 2885 2859 2883 2886 CONECT 2886 2856 2885 CONECT 2887 2857 CONECT 2888 2860 CONECT 2889 2860 2861 CONECT 2890 2862 2863 2894 CONECT 2891 2863 2892 CONECT 2892 2891 2893 2895 CONECT 2893 2892 2894 CONECT 2894 2890 2893 CONECT 2895 2892 2896 2900 CONECT 2896 2895 2897 CONECT 2897 2896 2898 CONECT 2898 2897 2899 CONECT 2899 2898 2900 CONECT 2900 2895 2899 CONECT 2901 2902 2918 CONECT 2902 2901 2903 CONECT 2903 2902 2904 CONECT 2904 2903 2905 CONECT 2905 2904 2906 CONECT 2906 2905 2907 CONECT 2907 2906 2908 CONECT 2908 2907 2909 CONECT 2909 2908 2910 CONECT 2910 2909 2911 CONECT 2911 2910 2912 CONECT 2912 2911 2913 CONECT 2913 2912 2914 CONECT 2914 2913 2915 CONECT 2915 2914 2916 CONECT 2916 2915 2917 CONECT 2917 2916 2918 CONECT 2918 2901 2917 CONECT 2919 2920 2921 2922 2923 CONECT 2920 2919 CONECT 2921 2919 CONECT 2922 2919 CONECT 2923 2919 CONECT 2924 2925 2935 2945 CONECT 2925 2924 2946 CONECT 2926 2927 2956 CONECT 2927 2926 2928 2957 CONECT 2928 2927 2929 CONECT 2929 2928 2955 CONECT 2930 2948 2958 2959 CONECT 2931 2932 2959 CONECT 2932 2931 2960 CONECT 2933 2960 2961 CONECT 2934 2935 2950 CONECT 2935 2924 2934 CONECT 2936 2938 2949 2951 CONECT 2937 2951 2952 CONECT 2938 2936 2939 2952 CONECT 2939 2938 2940 2944 CONECT 2940 2939 2941 CONECT 2941 2940 2942 CONECT 2942 2941 2943 CONECT 2943 2942 2944 CONECT 2944 2939 2943 CONECT 2945 2924 CONECT 2946 2925 2947 2950 CONECT 2947 2946 2948 CONECT 2948 2930 2947 2949 CONECT 2949 2936 2948 2950 CONECT 2950 2934 2946 2949 CONECT 2951 2936 2937 2953 CONECT 2952 2937 2938 CONECT 2953 2951 2954 2955 CONECT 2954 2953 CONECT 2955 2929 2953 2956 CONECT 2956 2926 2955 CONECT 2957 2927 CONECT 2958 2930 CONECT 2959 2930 2931 CONECT 2960 2932 2933 2964 CONECT 2961 2933 2962 CONECT 2962 2961 2963 2965 CONECT 2963 2962 2964 CONECT 2964 2960 2963 CONECT 2965 2962 2966 2970 CONECT 2966 2965 2967 CONECT 2967 2966 2968 CONECT 2968 2967 2969 CONECT 2969 2968 2970 CONECT 2970 2965 2969 CONECT 2971 2972 2988 CONECT 2972 2971 2973 CONECT 2973 2972 2974 CONECT 2974 2973 2975 CONECT 2975 2974 2976 CONECT 2976 2975 2977 CONECT 2977 2976 2978 CONECT 2978 2977 2979 CONECT 2979 2978 2980 CONECT 2980 2979 2981 CONECT 2981 2980 2982 CONECT 2982 2981 2983 CONECT 2983 2982 2984 CONECT 2984 2983 2985 CONECT 2985 2984 2986 CONECT 2986 2985 2987 CONECT 2987 2986 2988 CONECT 2988 2971 2987 CONECT 2989 2990 2991 2992 2993 CONECT 2990 2989 CONECT 2991 2989 CONECT 2992 2989 CONECT 2993 2989 CONECT 2994 2995 2996 2997 2998 CONECT 2995 2994 CONECT 2996 2994 CONECT 2997 2994 CONECT 2998 2994 CONECT 2999 3000 3001 3002 3003 CONECT 3000 2999 CONECT 3001 2999 CONECT 3002 2999 CONECT 3003 2999 MASTER 385 0 16 16 17 0 31 6 3149 4 314 32 END