HEADER TRANSFERASE 19-DEC-18 6QAI TITLE 2-DESOXIRIBOSYLTRANSFERASE FROM LEISHMANIA MEXICANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-DEOXYRIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA; SOURCE 3 ORGANISM_TAXID: 5665; SOURCE 4 GENE: LMXM_23_1580; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEOXYRIBOSYLTRANSFERASE, ENZYMATIC SYNTHESIS, OLIGOMERIC ASSEMBLY, KEYWDS 2 PURINE NUCLEOSIDE ANALOGUES, PROTEIN CRYSTALLOGRAPHY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.CRESPO,J.M.MANCHENO REVDAT 2 24-JAN-24 6QAI 1 REMARK REVDAT 1 26-DEC-18 6QAI 0 SPRSDE 26-DEC-18 6QAI 5NBR JRNL AUTH N.CRESPO,P.A.SANCHEZ-MURCIA,F.GAGO,J.CEJUDO-SANCHES, JRNL AUTH 2 M.A.GALMES,J.FERNANDEZ-LUCAS,J.M.MANCHENO JRNL TITL 2'-DEOXYRIBOSYLTRANSFERASE FROM LEISHMANIA MEXICANA, AN JRNL TITL 2 EFFICIENT BIOCATALYST FOR ONE-POT, ONE-STEP SYNTHESIS OF JRNL TITL 3 NUCLEOSIDES FROM POORLY SOLUBLE PURINE BASES. JRNL REF APPL.MICROBIOL.BIOTECHNOL. V. 101 7187 2017 JRNL REFN ISSN 0175-7598 JRNL PMID 28785897 JRNL DOI 10.1007/S00253-017-8450-Y REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 33853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8636 - 3.9996 0.99 2406 147 0.1393 0.1648 REMARK 3 2 3.9996 - 3.1750 0.99 2340 142 0.1568 0.1876 REMARK 3 3 3.1750 - 2.7738 0.99 2308 147 0.1867 0.2221 REMARK 3 4 2.7738 - 2.5202 0.98 2305 150 0.1847 0.2034 REMARK 3 5 2.5202 - 2.3396 0.98 2288 144 0.1722 0.1923 REMARK 3 6 2.3396 - 2.2017 0.98 2247 140 0.1726 0.2047 REMARK 3 7 2.2017 - 2.0914 0.98 2292 142 0.1790 0.2197 REMARK 3 8 2.0914 - 2.0004 0.97 2245 150 0.1931 0.2445 REMARK 3 9 2.0004 - 1.9234 0.97 2249 134 0.1970 0.2468 REMARK 3 10 1.9234 - 1.8570 0.97 2252 143 0.1906 0.2050 REMARK 3 11 1.8570 - 1.7989 0.96 2248 146 0.2012 0.2339 REMARK 3 12 1.7989 - 1.7475 0.96 2244 135 0.2169 0.2651 REMARK 3 13 1.7475 - 1.7015 0.96 2223 143 0.2205 0.2244 REMARK 3 14 1.7015 - 1.6600 0.96 2206 137 0.2425 0.3020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2452 REMARK 3 ANGLE : 0.895 3334 REMARK 3 CHIRALITY : 0.055 366 REMARK 3 PLANARITY : 0.006 436 REMARK 3 DIHEDRAL : 3.712 1993 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4917 -0.8844 79.1135 REMARK 3 T TENSOR REMARK 3 T11: 0.1180 T22: 0.1203 REMARK 3 T33: 0.1924 T12: 0.0076 REMARK 3 T13: -0.0163 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 2.9880 L22: 5.6911 REMARK 3 L33: 3.1305 L12: 0.7772 REMARK 3 L13: -0.6049 L23: -0.6125 REMARK 3 S TENSOR REMARK 3 S11: 0.0811 S12: 0.1807 S13: 0.2308 REMARK 3 S21: -0.1892 S22: -0.0413 S23: 0.1204 REMARK 3 S31: -0.2224 S32: -0.0851 S33: -0.0055 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.8773 -0.0171 85.1042 REMARK 3 T TENSOR REMARK 3 T11: 0.2134 T22: 0.2661 REMARK 3 T33: 0.2612 T12: 0.0861 REMARK 3 T13: -0.0452 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 3.5624 L22: 4.5605 REMARK 3 L33: 3.2712 L12: -1.6118 REMARK 3 L13: -0.2534 L23: 0.4411 REMARK 3 S TENSOR REMARK 3 S11: -0.1062 S12: -0.0688 S13: 0.2207 REMARK 3 S21: 0.0915 S22: 0.0602 S23: 0.3197 REMARK 3 S31: -0.5008 S32: -0.7354 S33: -0.0324 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4538 -4.8206 96.7774 REMARK 3 T TENSOR REMARK 3 T11: 0.1759 T22: 0.3278 REMARK 3 T33: 0.2245 T12: -0.0080 REMARK 3 T13: -0.0241 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 1.0059 L22: 1.4419 REMARK 3 L33: 3.8918 L12: -0.2022 REMARK 3 L13: -0.3994 L23: 0.7386 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: -0.5133 S13: 0.0226 REMARK 3 S21: 0.1823 S22: 0.1687 S23: -0.2230 REMARK 3 S31: -0.0960 S32: 0.6634 S33: -0.1110 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6391 -18.2044 81.4480 REMARK 3 T TENSOR REMARK 3 T11: 0.2146 T22: 0.0768 REMARK 3 T33: 0.3124 T12: 0.0096 REMARK 3 T13: -0.0297 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 6.9101 L22: 8.4571 REMARK 3 L33: 4.0550 L12: 0.1619 REMARK 3 L13: -2.5148 L23: -4.3321 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: 0.0034 S13: -0.4503 REMARK 3 S21: -0.1799 S22: 0.0917 S23: 0.5910 REMARK 3 S31: 0.4714 S32: 0.1659 S33: -0.1297 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0377 -1.0090 118.2717 REMARK 3 T TENSOR REMARK 3 T11: 0.5201 T22: 0.8271 REMARK 3 T33: 0.3093 T12: -0.0307 REMARK 3 T13: 0.1217 T23: -0.0662 REMARK 3 L TENSOR REMARK 3 L11: 1.4919 L22: 2.7269 REMARK 3 L33: 2.1866 L12: 0.1230 REMARK 3 L13: -1.6957 L23: -0.9724 REMARK 3 S TENSOR REMARK 3 S11: -0.1283 S12: -0.8511 S13: -0.0804 REMARK 3 S21: 0.9001 S22: 0.0521 S23: 0.3097 REMARK 3 S31: 0.0600 S32: -0.1299 S33: 0.0127 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4283 -11.7608 111.8464 REMARK 3 T TENSOR REMARK 3 T11: 0.6467 T22: 0.6155 REMARK 3 T33: 0.2639 T12: -0.0601 REMARK 3 T13: 0.0404 T23: 0.0784 REMARK 3 L TENSOR REMARK 3 L11: 3.9557 L22: 1.7377 REMARK 3 L33: 4.9467 L12: -0.7537 REMARK 3 L13: -3.5563 L23: 2.3492 REMARK 3 S TENSOR REMARK 3 S11: -0.1786 S12: -1.4055 S13: -0.7934 REMARK 3 S21: 1.4002 S22: -0.1204 S23: 0.1812 REMARK 3 S31: 0.8561 S32: 0.4639 S33: 0.2721 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7384 4.9053 103.1622 REMARK 3 T TENSOR REMARK 3 T11: 0.3050 T22: 0.4296 REMARK 3 T33: 0.2457 T12: 0.0684 REMARK 3 T13: 0.0532 T23: -0.1299 REMARK 3 L TENSOR REMARK 3 L11: 1.9888 L22: 2.9830 REMARK 3 L33: 4.6003 L12: -0.0467 REMARK 3 L13: 0.5536 L23: 1.3083 REMARK 3 S TENSOR REMARK 3 S11: 0.0902 S12: -0.5638 S13: 0.2977 REMARK 3 S21: 0.1210 S22: -0.2687 S23: 0.3086 REMARK 3 S31: -0.8309 S32: -0.6919 S33: -0.2285 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33859 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 39.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2A0K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, 0.1 M TRIS-HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.10450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.13250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.10450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.13250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O ILE A 45 LIES ON A SPECIAL POSITION. REMARK 375 CG2 ILE A 45 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 155 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ALA B 3 REMARK 465 THR B 154 REMARK 465 PRO B 155 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 64 O2 TRS A 202 1.71 REMARK 500 O HOH A 332 O HOH A 405 1.96 REMARK 500 O HOH B 302 O HOH B 329 2.03 REMARK 500 O HOH A 344 O HOH A 412 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C ILE A 45 O ILE A 45 2557 1.24 REMARK 500 CB ILE A 45 CG2 ILE A 45 2557 1.54 REMARK 500 C ILE A 45 C ILE A 45 2557 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 64 CB ASP A 64 CG 0.144 REMARK 500 ASP A 64 CG ASP A 64 OD2 0.138 REMARK 500 CYS B 80 CB CYS B 80 SG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 64 CB - CG - OD1 ANGL. DEV. = -9.3 DEGREES REMARK 500 ASP A 64 CB - CG - OD2 ANGL. DEV. = 17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 74.87 -154.36 REMARK 500 ALA A 3 60.42 -153.59 REMARK 500 SER A 75 -165.39 -170.19 REMARK 500 ASN B 44 31.87 -142.64 REMARK 500 ARG B 74 -12.84 69.19 REMARK 500 SER B 75 -154.60 -149.80 REMARK 500 HIS B 152 44.27 -144.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 45 12.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 201 DBREF 6QAI A 1 155 UNP E9AWJ0 E9AWJ0_LEIMU 1 155 DBREF 6QAI B 1 155 UNP E9AWJ0 E9AWJ0_LEIMU 1 155 SEQADV 6QAI HIS A 0 UNP E9AWJ0 EXPRESSION TAG SEQADV 6QAI HIS B 0 UNP E9AWJ0 EXPRESSION TAG SEQRES 1 A 156 HIS MET PRO ALA PRO LYS THR ILE TYR ILE ALA GLY PRO SEQRES 2 A 156 ALA VAL PHE HIS PRO ASP ASN GLY GLU ALA TYR TYR ASN SEQRES 3 A 156 ASN VAL ARG ALA LEU MET LYS GLY LYS ASP VAL VAL PRO SEQRES 4 A 156 LEU ILE PRO THR ASP ASN ILE ALA THR GLY ALA VAL ASN SEQRES 5 A 156 ILE ARG ASN LYS ASN ILE ASP MET ILE ARG ALA CYS ASP SEQRES 6 A 156 ALA ILE ILE ALA ASP LEU SER PRO PHE ARG SER LYS GLU SEQRES 7 A 156 PRO ASP CYS GLY THR ALA PHE GLU LEU GLY TYR ALA ALA SEQRES 8 A 156 ALA LEU GLY LYS VAL LEU LEU THR PHE SER THR ASP THR SEQRES 9 A 156 ARG PRO MET VAL GLU LYS TYR GLY SER GLU MET ALA ASP SEQRES 10 A 156 GLY LEU SER VAL GLU ASN PHE GLY LEU PRO PHE ASN LEU SEQRES 11 A 156 MET LEU HIS ASP GLY THR ASP VAL PHE ASP SER PHE GLU SEQRES 12 A 156 ALA ALA PHE ALA TYR PHE VAL GLU HIS HIS LEU THR PRO SEQRES 1 B 156 HIS MET PRO ALA PRO LYS THR ILE TYR ILE ALA GLY PRO SEQRES 2 B 156 ALA VAL PHE HIS PRO ASP ASN GLY GLU ALA TYR TYR ASN SEQRES 3 B 156 ASN VAL ARG ALA LEU MET LYS GLY LYS ASP VAL VAL PRO SEQRES 4 B 156 LEU ILE PRO THR ASP ASN ILE ALA THR GLY ALA VAL ASN SEQRES 5 B 156 ILE ARG ASN LYS ASN ILE ASP MET ILE ARG ALA CYS ASP SEQRES 6 B 156 ALA ILE ILE ALA ASP LEU SER PRO PHE ARG SER LYS GLU SEQRES 7 B 156 PRO ASP CYS GLY THR ALA PHE GLU LEU GLY TYR ALA ALA SEQRES 8 B 156 ALA LEU GLY LYS VAL LEU LEU THR PHE SER THR ASP THR SEQRES 9 B 156 ARG PRO MET VAL GLU LYS TYR GLY SER GLU MET ALA ASP SEQRES 10 B 156 GLY LEU SER VAL GLU ASN PHE GLY LEU PRO PHE ASN LEU SEQRES 11 B 156 MET LEU HIS ASP GLY THR ASP VAL PHE ASP SER PHE GLU SEQRES 12 B 156 ALA ALA PHE ALA TYR PHE VAL GLU HIS HIS LEU THR PRO HET TRS A 201 8 HET TRS A 202 8 HET TRS B 201 8 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 TRS 3(C4 H12 N O3 1+) FORMUL 6 HOH *224(H2 O) HELIX 1 AA1 GLY A 11 HIS A 16 5 6 HELIX 2 AA2 GLY A 20 LYS A 32 1 13 HELIX 3 AA3 GLY A 48 CYS A 63 1 16 HELIX 4 AA4 ASP A 79 GLY A 93 1 15 HELIX 5 AA5 PRO A 105 GLY A 111 1 7 HELIX 6 AA6 ASN A 128 HIS A 132 5 5 HELIX 7 AA7 SER A 140 LEU A 153 1 14 HELIX 8 AA8 GLY B 11 HIS B 16 5 6 HELIX 9 AA9 GLY B 20 LYS B 32 1 13 HELIX 10 AB1 GLY B 48 CYS B 63 1 16 HELIX 11 AB2 ASP B 79 LEU B 92 1 14 HELIX 12 AB3 PRO B 105 GLY B 111 1 7 HELIX 13 AB4 ASN B 128 HIS B 132 5 5 HELIX 14 AB5 SER B 140 HIS B 152 1 13 SHEET 1 AA1 4 VAL A 36 LEU A 39 0 SHEET 2 AA1 4 LYS A 5 ALA A 10 1 N ILE A 7 O LEU A 39 SHEET 3 AA1 4 ALA A 65 ASP A 69 1 O ALA A 65 N TYR A 8 SHEET 4 AA1 4 VAL A 95 PHE A 99 1 O LEU A 97 N ALA A 68 SHEET 1 AA2 2 MET A 114 ALA A 115 0 SHEET 2 AA2 2 LEU A 118 SER A 119 -1 O LEU A 118 N ALA A 115 SHEET 1 AA3 4 VAL B 36 LEU B 39 0 SHEET 2 AA3 4 LYS B 5 ALA B 10 1 N ILE B 7 O LEU B 39 SHEET 3 AA3 4 ALA B 65 ASP B 69 1 O ALA B 65 N TYR B 8 SHEET 4 AA3 4 VAL B 95 PHE B 99 1 O LEU B 97 N ALA B 68 SHEET 1 AA4 2 MET B 114 ALA B 115 0 SHEET 2 AA4 2 LEU B 118 SER B 119 -1 O LEU B 118 N ALA B 115 LINK OD1 ASP A 43 N TRS A 201 1555 1555 1.31 LINK OD2 ASP A 64 C3 TRS A 202 1555 2557 1.43 SITE 1 AC1 13 ALA A 10 GLY A 11 VAL A 14 PHE A 15 SITE 2 AC1 13 PRO A 41 ASP A 43 ASN A 56 ASP A 79 SITE 3 AC1 13 GLY A 81 GLU A 85 HOH A 312 ASN B 128 SITE 4 AC1 13 MET B 130 SITE 1 AC2 5 PRO A 4 LYS A 5 THR A 6 ASP A 64 SITE 2 AC2 5 HOH A 322 SITE 1 AC3 11 ASN A 128 ALA B 10 GLY B 11 PHE B 15 SITE 2 AC3 11 ASP B 43 ASN B 56 ASP B 79 GLY B 81 SITE 3 AC3 11 THR B 82 GLU B 85 HOH B 303 CRYST1 80.209 46.265 87.987 90.00 115.06 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012467 0.000000 0.005830 0.00000 SCALE2 0.000000 0.021615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012546 0.00000