HEADER PEPTIDE BINDING PROTEIN 20-DEC-18 6QBB TITLE ENGINEERED STREPTAVIDIN VARIANT (ENAGY) IN COMPLEX WITH THE STREP-TAG TITLE 2 II PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: STREPTAVIDIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: STREP-TAG II PEPTIDE; COMPND 7 CHAIN: P, Q; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE PEPTIDE SAWSHPQFEK CARRIES AN ANTHRANILOYL/2- COMPND 10 AMINOBENZOYL (ABZ) GROUP AT THE N-TERMINUS AND AN AMIDE GROUP AT THE COMPND 11 C-TERMINUS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVIDINII; SOURCE 3 ORGANISM_TAXID: 1895; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630 KEYWDS LOOP ENGINEERING, PEPTIDE BINDING PROTEIN, PROTEIN ENGINEERING, KEYWDS 2 STREP-TAG, STREPTAVIDIN EXPDTA X-RAY DIFFRACTION AUTHOR A.SKERRA,A.EICHINGER REVDAT 3 24-JAN-24 6QBB 1 REMARK REVDAT 2 12-MAY-21 6QBB 1 JRNL REMARK REVDAT 1 29-JAN-20 6QBB 0 JRNL AUTH T.G.M.SCHMIDT,A.EICHINGER,M.SCHNEIDER,L.BONET,U.CARL, JRNL AUTH 2 D.KARTHAUS,I.THEOBALD,A.SKERRA JRNL TITL THE ROLE OF CHANGING LOOP CONFORMATIONS IN STREPTAVIDIN JRNL TITL 2 VERSIONS ENGINEERED FOR HIGH-AFFINITY BINDING OF THE JRNL TITL 3 STREP-TAG II PEPTIDE. JRNL REF J.MOL.BIOL. V. 433 66893 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 33639211 JRNL DOI 10.1016/J.JMB.2021.166893 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 34172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1768 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2473 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.2250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1942 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.69000 REMARK 3 B22 (A**2) : 1.99000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.073 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.721 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2012 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1770 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2757 ; 1.483 ; 1.892 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4047 ; 1.067 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 260 ; 7.321 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;21.730 ;23.483 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 271 ;11.250 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.228 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 300 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2375 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 519 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1030 ; 2.347 ; 1.265 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1028 ; 2.349 ; 1.264 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1284 ; 3.629 ; 1.876 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1284 ; 3.629 ; 1.875 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 982 ; 2.773 ; 1.562 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 983 ; 2.771 ; 1.562 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1470 ; 4.002 ; 2.249 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2461 ; 6.499 ;12.651 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2366 ; 6.426 ;12.132 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 15 132 B 15 132 5699 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4564 -28.0769 15.5502 REMARK 3 T TENSOR REMARK 3 T11: 0.0237 T22: 0.0544 REMARK 3 T33: 0.0040 T12: -0.0032 REMARK 3 T13: 0.0063 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.3971 L22: 0.2688 REMARK 3 L33: 0.1249 L12: 0.0214 REMARK 3 L13: -0.0259 L23: 0.0065 REMARK 3 S TENSOR REMARK 3 S11: -0.0178 S12: -0.0849 S13: -0.0243 REMARK 3 S21: -0.0002 S22: 0.0256 S23: 0.0010 REMARK 3 S31: 0.0059 S32: 0.0193 S33: -0.0078 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 3 P 10 REMARK 3 RESIDUE RANGE : P 11 P 11 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1799 -32.4295 11.1319 REMARK 3 T TENSOR REMARK 3 T11: 0.0361 T22: 0.0357 REMARK 3 T33: 0.0302 T12: 0.0078 REMARK 3 T13: -0.0260 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 3.1401 L22: 1.6149 REMARK 3 L33: 0.6512 L12: -2.0087 REMARK 3 L13: -0.2590 L23: -0.2899 REMARK 3 S TENSOR REMARK 3 S11: 0.1106 S12: -0.0018 S13: 0.0582 REMARK 3 S21: -0.1233 S22: -0.0623 S23: -0.0129 REMARK 3 S31: 0.0599 S32: 0.0748 S33: -0.0483 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2941 -16.9397 4.2938 REMARK 3 T TENSOR REMARK 3 T11: 0.0278 T22: 0.0317 REMARK 3 T33: 0.0277 T12: -0.0084 REMARK 3 T13: 0.0040 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.0639 L22: 0.1132 REMARK 3 L33: 0.2801 L12: -0.0638 REMARK 3 L13: -0.1048 L23: 0.0498 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: 0.0119 S13: 0.0071 REMARK 3 S21: -0.0152 S22: -0.0061 S23: 0.0093 REMARK 3 S31: -0.0203 S32: -0.0103 S33: -0.0033 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Q 3 Q 10 REMARK 3 RESIDUE RANGE : Q 11 Q 11 REMARK 3 ORIGIN FOR THE GROUP (A): -22.6895 -20.8148 -0.3732 REMARK 3 T TENSOR REMARK 3 T11: 0.0316 T22: 0.0898 REMARK 3 T33: 0.0158 T12: 0.0314 REMARK 3 T13: -0.0145 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.6992 L22: 2.2236 REMARK 3 L33: 1.1416 L12: -0.4515 REMARK 3 L13: 1.0202 L23: -1.3251 REMARK 3 S TENSOR REMARK 3 S11: 0.1167 S12: -0.0582 S13: -0.0829 REMARK 3 S21: -0.1490 S22: 0.0241 S23: 0.1793 REMARK 3 S31: 0.1310 S32: -0.0543 S33: -0.1408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6QBB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI 111 DOUBLE-CRYSTAL REMARK 200 OPTICS : SI MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.1.0 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35992 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 49.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 1RST REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 550, ZINC SULFATE, 2-(N REMARK 280 -MORPHOLINO)ETHANESULFONIC ACID, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.08500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.04000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.08500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.04000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, B, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -64.17000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 13 REMARK 465 GLU A 14 REMARK 465 SER A 136 REMARK 465 ALA A 137 REMARK 465 ALA A 138 REMARK 465 SER A 139 REMARK 465 ABZ P 0 REMARK 465 SER P 1 REMARK 465 ALA P 2 REMARK 465 MET B 13 REMARK 465 GLU B 14 REMARK 465 LYS B 134 REMARK 465 PRO B 135 REMARK 465 SER B 136 REMARK 465 ALA B 137 REMARK 465 ALA B 138 REMARK 465 SER B 139 REMARK 465 ABZ Q 0 REMARK 465 SER Q 1 REMARK 465 ALA Q 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 84 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 84 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 101 74.36 48.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RST RELATED DB: PDB DBREF 6QBB A 14 139 UNP P22629 SAV_STRAV 38 163 DBREF 6QBB P 0 11 PDB 6QBB 6QBB 0 11 DBREF 6QBB B 14 139 UNP P22629 SAV_STRAV 38 163 DBREF 6QBB Q 0 11 PDB 6QBB 6QBB 0 11 SEQADV 6QBB MET A 13 UNP P22629 INITIATING METHIONINE SEQADV 6QBB VAL A 44 UNP P22629 GLU 68 ENGINEERED MUTATION SEQADV 6QBB THR A 45 UNP P22629 SER 69 ENGINEERED MUTATION SEQADV 6QBB ARG A 47 UNP P22629 VAL 71 ENGINEERED MUTATION SEQADV 6QBB GLU A 117 UNP P22629 ALA 141 ENGINEERED MUTATION SEQADV 6QBB GLY A 120 UNP P22629 TRP 144 ENGINEERED MUTATION SEQADV 6QBB TYR A 121 UNP P22629 LYS 145 ENGINEERED MUTATION SEQADV 6QBB MET B 13 UNP P22629 INITIATING METHIONINE SEQADV 6QBB VAL B 44 UNP P22629 GLU 68 ENGINEERED MUTATION SEQADV 6QBB THR B 45 UNP P22629 SER 69 ENGINEERED MUTATION SEQADV 6QBB ARG B 47 UNP P22629 VAL 71 ENGINEERED MUTATION SEQADV 6QBB GLU B 117 UNP P22629 ALA 141 ENGINEERED MUTATION SEQADV 6QBB GLY B 120 UNP P22629 TRP 144 ENGINEERED MUTATION SEQADV 6QBB TYR B 121 UNP P22629 LYS 145 ENGINEERED MUTATION SEQRES 1 A 127 MET GLU ALA GLY ILE THR GLY THR TRP TYR ASN GLN LEU SEQRES 2 A 127 GLY SER THR PHE ILE VAL THR ALA GLY ALA ASP GLY ALA SEQRES 3 A 127 LEU THR GLY THR TYR VAL THR ALA ARG GLY ASN ALA GLU SEQRES 4 A 127 SER ARG TYR VAL LEU THR GLY ARG TYR ASP SER ALA PRO SEQRES 5 A 127 ALA THR ASP GLY SER GLY THR ALA LEU GLY TRP THR VAL SEQRES 6 A 127 ALA TRP LYS ASN ASN TYR ARG ASN ALA HIS SER ALA THR SEQRES 7 A 127 THR TRP SER GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG SEQRES 8 A 127 ILE ASN THR GLN TRP LEU LEU THR SER GLY THR THR GLU SEQRES 9 A 127 GLU ASN ALA GLY TYR SER THR LEU VAL GLY HIS ASP THR SEQRES 10 A 127 PHE THR LYS VAL LYS PRO SER ALA ALA SER SEQRES 1 P 12 ABZ SER ALA TRP SER HIS PRO GLN PHE GLU LYS NH2 SEQRES 1 B 127 MET GLU ALA GLY ILE THR GLY THR TRP TYR ASN GLN LEU SEQRES 2 B 127 GLY SER THR PHE ILE VAL THR ALA GLY ALA ASP GLY ALA SEQRES 3 B 127 LEU THR GLY THR TYR VAL THR ALA ARG GLY ASN ALA GLU SEQRES 4 B 127 SER ARG TYR VAL LEU THR GLY ARG TYR ASP SER ALA PRO SEQRES 5 B 127 ALA THR ASP GLY SER GLY THR ALA LEU GLY TRP THR VAL SEQRES 6 B 127 ALA TRP LYS ASN ASN TYR ARG ASN ALA HIS SER ALA THR SEQRES 7 B 127 THR TRP SER GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG SEQRES 8 B 127 ILE ASN THR GLN TRP LEU LEU THR SER GLY THR THR GLU SEQRES 9 B 127 GLU ASN ALA GLY TYR SER THR LEU VAL GLY HIS ASP THR SEQRES 10 B 127 PHE THR LYS VAL LYS PRO SER ALA ALA SER SEQRES 1 Q 12 ABZ SER ALA TRP SER HIS PRO GLN PHE GLU LYS NH2 HET NH2 P 11 1 HET NH2 Q 11 1 HETNAM NH2 AMINO GROUP FORMUL 2 NH2 2(H2 N) FORMUL 5 HOH *228(H2 O) HELIX 1 AA1 ASN A 49 GLU A 51 5 3 HELIX 2 AA2 THR A 115 TYR A 121 5 7 HELIX 3 AA3 HIS P 5 GLU P 9 5 5 HELIX 4 AA4 ASN B 49 GLU B 51 5 3 HELIX 5 AA5 THR B 115 TYR B 121 5 7 HELIX 6 AA6 HIS Q 5 GLU Q 9 5 5 SHEET 1 AA1 9 GLY A 19 TYR A 22 0 SHEET 2 AA1 9 THR A 28 ALA A 33 -1 O PHE A 29 N TRP A 21 SHEET 3 AA1 9 ALA A 38 VAL A 44 -1 O VAL A 44 N THR A 28 SHEET 4 AA1 9 ARG A 53 TYR A 60 -1 O TYR A 54 N TYR A 43 SHEET 5 AA1 9 THR A 71 LYS A 80 -1 O THR A 76 N THR A 57 SHEET 6 AA1 9 ASN A 85 VAL A 97 -1 O ALA A 86 N TRP A 79 SHEET 7 AA1 9 ARG A 103 SER A 112 -1 O ARG A 103 N VAL A 97 SHEET 8 AA1 9 THR A 123 LYS A 132 -1 O PHE A 130 N ILE A 104 SHEET 9 AA1 9 GLY A 19 TYR A 22 -1 N TYR A 22 O THR A 131 SHEET 1 AA2 9 GLY B 19 TYR B 22 0 SHEET 2 AA2 9 THR B 28 ALA B 33 -1 O PHE B 29 N TRP B 21 SHEET 3 AA2 9 ALA B 38 VAL B 44 -1 O VAL B 44 N THR B 28 SHEET 4 AA2 9 ARG B 53 TYR B 60 -1 O TYR B 54 N TYR B 43 SHEET 5 AA2 9 THR B 71 LYS B 80 -1 O THR B 76 N THR B 57 SHEET 6 AA2 9 ASN B 85 VAL B 97 -1 O ALA B 86 N TRP B 79 SHEET 7 AA2 9 ARG B 103 SER B 112 -1 O ARG B 103 N VAL B 97 SHEET 8 AA2 9 THR B 123 THR B 131 -1 O PHE B 130 N ILE B 104 SHEET 9 AA2 9 GLY B 19 TYR B 22 -1 N TYR B 22 O THR B 131 LINK C LYS P 10 N NH2 P 11 1555 1555 1.32 LINK C LYS Q 10 N NH2 Q 11 1555 1555 1.33 CRYST1 45.560 64.170 78.080 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021949 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012807 0.00000