HEADER TRANSFERASE 21-DEC-18 6QBT TITLE STRUCTURE OF THE HTLV-2 INTEGRASE CATALYTIC CORE DOMAIN IN COMPLEX TITLE 2 WITH MAGNESIUM (TRIMERIC FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTLV-2 INTEGRASE CATALYTIC CORE DOMAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN T-CELL LEUKEMIA VIRUS 2; SOURCE 3 ORGANISM_COMMON: HTLV-2; SOURCE 4 ORGANISM_TAXID: 11909; SOURCE 5 GENE: POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 KEYWDS RETROVIRUS, DELTARETROVIRUS, INTEGRATION, STRAND-TRANSFER, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.BARSKI,J.J.MINNELL,G.N.MAERTENS REVDAT 3 24-JAN-24 6QBT 1 REMARK REVDAT 2 14-APR-21 6QBT 1 JRNL REVDAT 1 30-SEP-20 6QBT 0 JRNL AUTH M.S.BARSKI,J.J.MINNELL,Z.HODAKOVA,V.E.PYE,A.NANS, JRNL AUTH 2 P.CHEREPANOV,G.N.MAERTENS JRNL TITL CRYO-EM STRUCTURE OF THE DELTARETROVIRAL INTASOME IN COMPLEX JRNL TITL 2 WITH THE PP2A REGULATORY SUBUNIT B56 GAMMA. JRNL REF NAT COMMUN V. 11 5043 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33028863 JRNL DOI 10.1038/S41467-020-18874-Y REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1195 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QBT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12518 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 40.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.02300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CZ1 REMARK 200 REMARK 200 REMARK: ELONGATED RODS REACHING UP TO 0.5 MM IN LENGTH. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 8.5, 14% PEG 8000, 100 REMARK 280 MM MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 57.96000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.96000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.96000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.96000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.96000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.96000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 57.96000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 57.96000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 57.96000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 57.96000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 57.96000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 57.96000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 57.96000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 57.96000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 57.96000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 57.96000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 57.96000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 57.96000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 28.98000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 86.94000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 86.94000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 28.98000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 28.98000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 28.98000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 86.94000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 86.94000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 28.98000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 86.94000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 28.98000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 86.94000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 28.98000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 86.94000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 86.94000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 86.94000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 28.98000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 86.94000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 28.98000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 28.98000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 28.98000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 86.94000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 86.94000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 28.98000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 28.98000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 86.94000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 86.94000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 86.94000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 86.94000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 28.98000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 86.94000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 28.98000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 86.94000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 28.98000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 28.98000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 28.98000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 173.88000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 115.92000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 57.96000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 115.92000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -57.96000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 173.88000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 435 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 53 REMARK 465 ILE A 147 REMARK 465 PRO A 148 REMARK 465 TYR A 149 REMARK 465 ASN A 150 REMARK 465 PRO A 151 REMARK 465 THR A 152 REMARK 465 SER A 153 REMARK 465 SER A 154 REMARK 465 SER A 210 REMARK 465 PRO A 211 REMARK 465 PRO A 212 REMARK 465 LEU A 213 REMARK 465 PRO A 214 REMARK 465 PRO A 215 REMARK 465 ILE A 216 REMARK 465 PRO A 217 REMARK 465 GLU A 218 REMARK 465 ALA A 219 REMARK 465 SER A 220 REMARK 465 THR A 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 438 O HOH A 453 2.02 REMARK 500 O HIS A 209 O HOH A 401 2.10 REMARK 500 OG1 THR A 98 OE1 GLU A 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 436 O HOH A 446 7665 1.49 REMARK 500 O HOH A 441 O HOH A 456 10646 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 174 C CYS A 175 N -0.290 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 174 O - C - N ANGL. DEV. = -13.3 DEGREES REMARK 500 CYS A 175 C - N - CA ANGL. DEV. = 31.4 DEGREES REMARK 500 PRO A 199 C - N - CD ANGL. DEV. = -19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 199 -11.05 -33.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 198 PRO A 199 -60.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CYS A 175 -10.83 REMARK 500 ASN A 198 -10.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 65 OD1 REMARK 620 2 ASP A 122 OD2 77.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 DBREF 6QBT A 53 221 UNP Q82441 Q82441_HTLV2 738 906 SEQRES 1 A 169 ARG ARG GLY LEU LEU PRO ASN HIS ILE TRP GLN GLY ASP SEQRES 2 A 169 VAL THR HIS TYR LYS TYR LYS LYS TYR LYS TYR CYS LEU SEQRES 3 A 169 HIS VAL TRP VAL ASP THR PHE SER GLY ALA VAL SER VAL SEQRES 4 A 169 SER CYS LYS LYS LYS GLU THR SER CYS GLU THR ILE SER SEQRES 5 A 169 ALA PHE LEU GLN ALA ILE SER LEU LEU GLY LYS PRO LEU SEQRES 6 A 169 HIS ILE ASN THR ASP ASN GLY PRO ALA PHE LEU SER GLN SEQRES 7 A 169 GLU PHE GLN GLU PHE CYS THR SER TYR HIS ILE LYS HIS SEQRES 8 A 169 SER THR HIS ILE PRO TYR ASN PRO THR SER SER GLY LEU SEQRES 9 A 169 VAL GLU ARG THR ASN GLY ILE ILE LYS ASN LEU LEU ASN SEQRES 10 A 169 LYS TYR LEU LEU ASP CYS PRO ASN LEU PRO LEU ASP ASN SEQRES 11 A 169 ALA ILE ASN LYS ALA LEU TRP THR LEU ASN GLN LEU ASN SEQRES 12 A 169 VAL MET ASN PRO SER GLY LYS THR ARG TRP GLN ILE HIS SEQRES 13 A 169 HIS SER PRO PRO LEU PRO PRO ILE PRO GLU ALA SER THR HET MG A 301 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ FORMUL 3 HOH *59(H2 O) HELIX 1 AA1 THR A 98 GLY A 114 1 17 HELIX 2 AA2 GLY A 124 SER A 129 1 6 HELIX 3 AA3 SER A 129 TYR A 139 1 11 HELIX 4 AA4 LEU A 156 CYS A 175 1 20 HELIX 5 AA5 PRO A 179 LEU A 194 1 16 HELIX 6 AA6 THR A 203 HIS A 209 1 7 SHEET 1 AA1 5 VAL A 89 LYS A 94 0 SHEET 2 AA1 5 TYR A 74 ASP A 83 -1 N CYS A 77 O LYS A 94 SHEET 3 AA1 5 ILE A 61 TYR A 71 -1 N THR A 67 O LEU A 78 SHEET 4 AA1 5 HIS A 118 ASN A 120 1 O HIS A 118 N TRP A 62 SHEET 5 AA1 5 LYS A 142 SER A 144 1 O LYS A 142 N ILE A 119 SSBOND 1 CYS A 100 CYS A 175 1555 7665 1.84 LINK OD1 ASP A 65 MG MG A 301 1555 1555 2.20 LINK OD2 ASP A 122 MG MG A 301 1555 1555 2.03 SITE 1 AC1 2 ASP A 65 ASP A 122 CRYST1 115.920 115.920 115.920 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008627 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008627 0.00000