HEADER TRANSFERASE 21-DEC-18 6QBV TITLE STRUCTURE OF THE HTLV-2 INTEGRASE CATALYTIC CORE DOMAIN IN COMPLEX TITLE 2 WITH MAGNESIUM (DIMERIC FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN T-CELL LEUKEMIA VIRUS 2; SOURCE 3 ORGANISM_COMMON: HTLV-2; SOURCE 4 ORGANISM_TAXID: 11909; SOURCE 5 GENE: POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2 KEYWDS RETROVIRUS, DELTARETROVIRUS, INTEGRATION, STRAND-TRANSFER, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.BARSKI,G.N.MAERTENS REVDAT 2 14-APR-21 6QBV 1 JRNL REVDAT 1 30-SEP-20 6QBV 0 JRNL AUTH M.S.BARSKI,J.J.MINNELL,Z.HODAKOVA,V.E.PYE,A.NANS, JRNL AUTH 2 P.CHEREPANOV,G.N.MAERTENS JRNL TITL CRYO-EM STRUCTURE OF THE DELTARETROVIRAL INTASOME IN COMPLEX JRNL TITL 2 WITH THE PP2A REGULATORY SUBUNIT B56 GAMMA. JRNL REF NAT COMMUN V. 11 5043 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33028863 JRNL DOI 10.1038/S41467-020-18874-Y REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : 0.05 REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.885 REMARK 3 FREE R VALUE TEST SET COUNT : 1876 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2707 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.00600 REMARK 3 B22 (A**2) : -4.52800 REMARK 3 B33 (A**2) : -1.26700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.06100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.301 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.258 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.673 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4755 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6444 ; 1.624 ; 1.626 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 571 ; 7.074 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;36.830 ;23.773 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 811 ;17.359 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.495 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 628 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3534 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1920 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3157 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 153 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2320 ; 6.812 ; 6.755 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2879 ; 9.157 ;10.111 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2435 ; 8.832 ; 7.190 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3565 ;11.427 ;10.490 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6QBV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38400 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 58.611 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.24200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.38300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6QBV REMARK 200 REMARK 200 REMARK: CUBIC CRYSTALS, ABOUT 0.1 MM IN SIZE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 8.5, 14% PEG 8000, 250 REMARK 280 MM MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 92.65750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.58750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 92.65750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.58750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 53 REMARK 465 ILE A 147 REMARK 465 PRO A 148 REMARK 465 TYR A 149 REMARK 465 ASN A 150 REMARK 465 PRO A 151 REMARK 465 THR A 152 REMARK 465 SER A 153 REMARK 465 SER A 154 REMARK 465 GLY A 155 REMARK 465 LEU A 156 REMARK 465 ASN A 198 REMARK 465 PRO A 199 REMARK 465 PRO A 212 REMARK 465 LEU A 213 REMARK 465 PRO A 214 REMARK 465 PRO A 215 REMARK 465 ILE A 216 REMARK 465 ARG B 53 REMARK 465 HIS B 146 REMARK 465 ILE B 147 REMARK 465 PRO B 148 REMARK 465 TYR B 149 REMARK 465 ASN B 150 REMARK 465 PRO B 151 REMARK 465 THR B 152 REMARK 465 SER B 153 REMARK 465 SER B 154 REMARK 465 ASN B 198 REMARK 465 PRO B 199 REMARK 465 SER B 210 REMARK 465 PRO B 211 REMARK 465 PRO B 212 REMARK 465 LEU B 213 REMARK 465 PRO B 214 REMARK 465 PRO B 215 REMARK 465 ILE B 216 REMARK 465 ARG C 53 REMARK 465 HIS C 146 REMARK 465 ILE C 147 REMARK 465 PRO C 148 REMARK 465 TYR C 149 REMARK 465 ASN C 150 REMARK 465 PRO C 151 REMARK 465 THR C 152 REMARK 465 SER C 153 REMARK 465 SER C 154 REMARK 465 ASN C 198 REMARK 465 PRO C 199 REMARK 465 PRO C 212 REMARK 465 LEU C 213 REMARK 465 PRO C 214 REMARK 465 PRO C 215 REMARK 465 ILE C 216 REMARK 465 ARG D 53 REMARK 465 HIS D 146 REMARK 465 ILE D 147 REMARK 465 PRO D 148 REMARK 465 TYR D 149 REMARK 465 ASN D 150 REMARK 465 PRO D 151 REMARK 465 THR D 152 REMARK 465 SER D 153 REMARK 465 SER D 154 REMARK 465 GLY D 155 REMARK 465 ASN D 198 REMARK 465 PRO D 199 REMARK 465 PRO D 211 REMARK 465 PRO D 212 REMARK 465 LEU D 213 REMARK 465 PRO D 214 REMARK 465 PRO D 215 REMARK 465 ILE D 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 57 CG CD1 CD2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 TYR A 74 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 LEU A 128 CG CD1 CD2 REMARK 470 HIS A 146 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 157 CG1 CG2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 TYR B 74 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 SER B 111 OG REMARK 470 VAL B 196 CG1 CG2 REMARK 470 LEU C 56 CG CD1 CD2 REMARK 470 LEU C 57 CG CD1 CD2 REMARK 470 LEU C 194 CG CD1 CD2 REMARK 470 HIS D 60 CG ND1 CD2 CE1 NE2 REMARK 470 ILE D 61 CG1 CG2 CD1 REMARK 470 LEU D 117 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU D 57 O HOH D 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 72 -117.05 46.84 REMARK 500 LYS B 72 52.15 31.57 REMARK 500 LYS B 73 -20.69 94.51 REMARK 500 THR B 98 174.54 -58.38 REMARK 500 LYS C 72 58.43 31.13 REMARK 500 LYS C 73 -6.83 85.29 REMARK 500 GLU C 97 36.28 -145.10 REMARK 500 ASP C 122 -169.45 -70.02 REMARK 500 ASN D 59 9.10 85.77 REMARK 500 LYS D 73 -28.20 87.81 REMARK 500 HIS D 140 46.69 73.14 REMARK 500 CYS D 175 79.63 -159.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 420 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 421 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH D 420 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH D 421 DISTANCE = 8.63 ANGSTROMS REMARK 525 HOH D 422 DISTANCE = 8.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 65 OD1 REMARK 620 2 ASP B 122 OD2 73.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 65 OD1 REMARK 620 2 ASP C 122 OD2 75.9 REMARK 620 3 HOH C 416 O 154.5 78.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 65 OD1 REMARK 620 2 ASP D 122 OD2 63.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6QBT RELATED DB: PDB DBREF 6QBV A 53 216 UNP Q82441 Q82441_HTLV2 738 901 DBREF 6QBV B 53 216 UNP Q82441 Q82441_HTLV2 738 901 DBREF 6QBV C 53 216 UNP Q82441 Q82441_HTLV2 738 901 DBREF 6QBV D 53 216 UNP Q82441 Q82441_HTLV2 738 901 SEQRES 1 A 164 ARG ARG GLY LEU LEU PRO ASN HIS ILE TRP GLN GLY ASP SEQRES 2 A 164 VAL THR HIS TYR LYS TYR LYS LYS TYR LYS TYR CYS LEU SEQRES 3 A 164 HIS VAL TRP VAL ASP THR PHE SER GLY ALA VAL SER VAL SEQRES 4 A 164 SER CYS LYS LYS LYS GLU THR SER CYS GLU THR ILE SER SEQRES 5 A 164 ALA PHE LEU GLN ALA ILE SER LEU LEU GLY LYS PRO LEU SEQRES 6 A 164 HIS ILE ASN THR ASP ASN GLY PRO ALA PHE LEU SER GLN SEQRES 7 A 164 GLU PHE GLN GLU PHE CYS THR SER TYR HIS ILE LYS HIS SEQRES 8 A 164 SER THR HIS ILE PRO TYR ASN PRO THR SER SER GLY LEU SEQRES 9 A 164 VAL GLU ARG THR ASN GLY ILE ILE LYS ASN LEU LEU ASN SEQRES 10 A 164 LYS TYR LEU LEU ASP CYS PRO ASN LEU PRO LEU ASP ASN SEQRES 11 A 164 ALA ILE ASN LYS ALA LEU TRP THR LEU ASN GLN LEU ASN SEQRES 12 A 164 VAL MET ASN PRO SER GLY LYS THR ARG TRP GLN ILE HIS SEQRES 13 A 164 HIS SER PRO PRO LEU PRO PRO ILE SEQRES 1 B 164 ARG ARG GLY LEU LEU PRO ASN HIS ILE TRP GLN GLY ASP SEQRES 2 B 164 VAL THR HIS TYR LYS TYR LYS LYS TYR LYS TYR CYS LEU SEQRES 3 B 164 HIS VAL TRP VAL ASP THR PHE SER GLY ALA VAL SER VAL SEQRES 4 B 164 SER CYS LYS LYS LYS GLU THR SER CYS GLU THR ILE SER SEQRES 5 B 164 ALA PHE LEU GLN ALA ILE SER LEU LEU GLY LYS PRO LEU SEQRES 6 B 164 HIS ILE ASN THR ASP ASN GLY PRO ALA PHE LEU SER GLN SEQRES 7 B 164 GLU PHE GLN GLU PHE CYS THR SER TYR HIS ILE LYS HIS SEQRES 8 B 164 SER THR HIS ILE PRO TYR ASN PRO THR SER SER GLY LEU SEQRES 9 B 164 VAL GLU ARG THR ASN GLY ILE ILE LYS ASN LEU LEU ASN SEQRES 10 B 164 LYS TYR LEU LEU ASP CYS PRO ASN LEU PRO LEU ASP ASN SEQRES 11 B 164 ALA ILE ASN LYS ALA LEU TRP THR LEU ASN GLN LEU ASN SEQRES 12 B 164 VAL MET ASN PRO SER GLY LYS THR ARG TRP GLN ILE HIS SEQRES 13 B 164 HIS SER PRO PRO LEU PRO PRO ILE SEQRES 1 C 164 ARG ARG GLY LEU LEU PRO ASN HIS ILE TRP GLN GLY ASP SEQRES 2 C 164 VAL THR HIS TYR LYS TYR LYS LYS TYR LYS TYR CYS LEU SEQRES 3 C 164 HIS VAL TRP VAL ASP THR PHE SER GLY ALA VAL SER VAL SEQRES 4 C 164 SER CYS LYS LYS LYS GLU THR SER CYS GLU THR ILE SER SEQRES 5 C 164 ALA PHE LEU GLN ALA ILE SER LEU LEU GLY LYS PRO LEU SEQRES 6 C 164 HIS ILE ASN THR ASP ASN GLY PRO ALA PHE LEU SER GLN SEQRES 7 C 164 GLU PHE GLN GLU PHE CYS THR SER TYR HIS ILE LYS HIS SEQRES 8 C 164 SER THR HIS ILE PRO TYR ASN PRO THR SER SER GLY LEU SEQRES 9 C 164 VAL GLU ARG THR ASN GLY ILE ILE LYS ASN LEU LEU ASN SEQRES 10 C 164 LYS TYR LEU LEU ASP CYS PRO ASN LEU PRO LEU ASP ASN SEQRES 11 C 164 ALA ILE ASN LYS ALA LEU TRP THR LEU ASN GLN LEU ASN SEQRES 12 C 164 VAL MET ASN PRO SER GLY LYS THR ARG TRP GLN ILE HIS SEQRES 13 C 164 HIS SER PRO PRO LEU PRO PRO ILE SEQRES 1 D 164 ARG ARG GLY LEU LEU PRO ASN HIS ILE TRP GLN GLY ASP SEQRES 2 D 164 VAL THR HIS TYR LYS TYR LYS LYS TYR LYS TYR CYS LEU SEQRES 3 D 164 HIS VAL TRP VAL ASP THR PHE SER GLY ALA VAL SER VAL SEQRES 4 D 164 SER CYS LYS LYS LYS GLU THR SER CYS GLU THR ILE SER SEQRES 5 D 164 ALA PHE LEU GLN ALA ILE SER LEU LEU GLY LYS PRO LEU SEQRES 6 D 164 HIS ILE ASN THR ASP ASN GLY PRO ALA PHE LEU SER GLN SEQRES 7 D 164 GLU PHE GLN GLU PHE CYS THR SER TYR HIS ILE LYS HIS SEQRES 8 D 164 SER THR HIS ILE PRO TYR ASN PRO THR SER SER GLY LEU SEQRES 9 D 164 VAL GLU ARG THR ASN GLY ILE ILE LYS ASN LEU LEU ASN SEQRES 10 D 164 LYS TYR LEU LEU ASP CYS PRO ASN LEU PRO LEU ASP ASN SEQRES 11 D 164 ALA ILE ASN LYS ALA LEU TRP THR LEU ASN GLN LEU ASN SEQRES 12 D 164 VAL MET ASN PRO SER GLY LYS THR ARG TRP GLN ILE HIS SEQRES 13 D 164 HIS SER PRO PRO LEU PRO PRO ILE HET MG A 301 1 HET MG B 301 1 HET MG C 301 1 HET MG D 301 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG 4(MG 2+) FORMUL 9 HOH *100(H2 O) HELIX 1 AA1 THR A 98 GLY A 114 1 17 HELIX 2 AA2 GLY A 124 SER A 129 1 6 HELIX 3 AA3 SER A 129 TYR A 139 1 11 HELIX 4 AA4 GLU A 158 CYS A 175 1 18 HELIX 5 AA5 PRO A 179 LEU A 194 1 16 HELIX 6 AA6 THR A 203 HIS A 209 1 7 HELIX 7 AA7 THR B 98 GLY B 114 1 17 HELIX 8 AA8 GLY B 124 SER B 129 1 6 HELIX 9 AA9 SER B 129 HIS B 140 1 12 HELIX 10 AB1 LEU B 156 CYS B 175 1 20 HELIX 11 AB2 PRO B 179 LEU B 194 1 16 HELIX 12 AB3 THR B 203 HIS B 209 1 7 HELIX 13 AB4 THR C 98 GLY C 114 1 17 HELIX 14 AB5 GLY C 124 SER C 129 1 6 HELIX 15 AB6 SER C 129 HIS C 140 1 12 HELIX 16 AB7 LEU C 156 CYS C 175 1 20 HELIX 17 AB8 PRO C 179 LEU C 194 1 16 HELIX 18 AB9 THR C 203 HIS C 209 1 7 HELIX 19 AC1 THR D 98 GLY D 114 1 17 HELIX 20 AC2 GLY D 124 SER D 129 1 6 HELIX 21 AC3 SER D 129 HIS D 140 1 12 HELIX 22 AC4 VAL D 157 CYS D 175 1 19 HELIX 23 AC5 PRO D 179 LEU D 194 1 16 HELIX 24 AC6 THR D 203 SER D 210 1 8 SHEET 1 AA1 5 VAL A 89 LYS A 94 0 SHEET 2 AA1 5 TYR A 74 ASP A 83 -1 N CYS A 77 O LYS A 94 SHEET 3 AA1 5 ILE A 61 TYR A 71 -1 N TYR A 69 O TYR A 76 SHEET 4 AA1 5 HIS A 118 ASN A 120 1 O HIS A 118 N TRP A 62 SHEET 5 AA1 5 LYS A 142 SER A 144 1 O LYS A 142 N ILE A 119 SHEET 1 AA2 5 VAL B 89 LYS B 94 0 SHEET 2 AA2 5 TYR B 74 ASP B 83 -1 N CYS B 77 O LYS B 94 SHEET 3 AA2 5 ILE B 61 TYR B 71 -1 N GLN B 63 O VAL B 82 SHEET 4 AA2 5 HIS B 118 ASN B 120 1 O HIS B 118 N TRP B 62 SHEET 5 AA2 5 LYS B 142 SER B 144 1 O LYS B 142 N ILE B 119 SHEET 1 AA3 5 VAL C 89 LYS C 94 0 SHEET 2 AA3 5 TYR C 74 ASP C 83 -1 N TRP C 81 O SER C 90 SHEET 3 AA3 5 ILE C 61 TYR C 71 -1 N ASP C 65 O VAL C 80 SHEET 4 AA3 5 HIS C 118 THR C 121 1 O ASN C 120 N TRP C 62 SHEET 5 AA3 5 LYS C 142 SER C 144 1 O SER C 144 N ILE C 119 SHEET 1 AA4 5 VAL D 89 LYS D 94 0 SHEET 2 AA4 5 TYR D 74 ASP D 83 -1 N CYS D 77 O LYS D 94 SHEET 3 AA4 5 ILE D 61 TYR D 71 -1 N THR D 67 O LEU D 78 SHEET 4 AA4 5 HIS D 118 THR D 121 1 O ASN D 120 N TRP D 62 SHEET 5 AA4 5 LYS D 142 SER D 144 1 O LYS D 142 N ILE D 119 LINK OD2 ASP A 122 MG MG A 301 1555 1555 2.30 LINK OD1 ASP B 65 MG MG B 301 1555 1555 2.47 LINK OD2 ASP B 122 MG MG B 301 1555 1555 2.10 LINK OD1 ASP C 65 MG MG C 301 1555 1555 2.52 LINK OD2 ASP C 122 MG MG C 301 1555 1555 2.13 LINK MG MG C 301 O HOH C 416 1555 1555 2.54 LINK OD1 ASP D 65 MG MG D 301 1555 1555 2.57 LINK OD2 ASP D 122 MG MG D 301 1555 1555 2.71 SITE 1 AC1 2 ASP A 65 ASP A 122 SITE 1 AC2 2 ASP B 65 ASP B 122 SITE 1 AC3 3 ASP C 65 ASP C 122 HOH C 416 SITE 1 AC4 3 ASP D 65 VAL D 66 ASP D 122 CRYST1 185.315 89.175 65.530 90.00 102.49 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005396 0.000000 0.001195 0.00000 SCALE2 0.000000 0.011214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015630 0.00000