HEADER HYDROLASE 27-DEC-18 6QCB TITLE CRYSTAL STRUCTURE OF HUMAN CATHEPSIN D IN COMPLEX WITH MACROCYCLIC TITLE 2 INHIBITOR 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN D; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.23.5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CATHEPSIN D; COMPND 8 CHAIN: B; COMPND 9 EC: 3.4.23.5; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTSD, CPSD; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CTSD, CPSD; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ASPARTIC PROTEASE, PEPTIDOMIMETIC INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.BRYNDA,R.HOUSTECKA,P.MAJER,M.MARES REVDAT 5 24-JAN-24 6QCB 1 HETSYN REVDAT 4 29-JUL-20 6QCB 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 11-MAR-20 6QCB 1 JRNL REVDAT 2 19-FEB-20 6QCB 1 JRNL REVDAT 1 29-JAN-20 6QCB 0 JRNL AUTH R.HOUSTECKA,M.HADZIMA,J.FANFRLIK,J.BRYNDA,L.PALLOVA, JRNL AUTH 2 I.HANOVA,H.MERTLIKOVA-KAISEROVA,M.LEPSIK,M.HORN,M.SMRCINA, JRNL AUTH 3 P.MAJER,M.MARES JRNL TITL BIOMIMETIC MACROCYCLIC INHIBITORS OF HUMAN CATHEPSIN D: JRNL TITL 2 STRUCTURE-ACTIVITY RELATIONSHIP AND BINDING MODE ANALYSIS. JRNL REF J.MED.CHEM. V. 63 1576 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32003991 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01351 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 62404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2101 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4457 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2592 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.452 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2921 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2732 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3996 ; 1.740 ; 2.021 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6358 ; 1.072 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 6.562 ; 5.026 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;35.007 ;24.821 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 465 ;12.548 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;22.704 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 460 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3244 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 629 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1396 ; 1.468 ; 1.942 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1397 ; 1.467 ; 1.942 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1752 ; 2.149 ; 2.910 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1753 ; 2.148 ; 2.911 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1525 ; 2.564 ; 2.379 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1526 ; 2.563 ; 2.378 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2225 ; 3.769 ; 3.437 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3140 ; 5.181 ;24.351 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3141 ; 5.181 ;24.353 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6QCB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62404 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.95300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6QBH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG 3350 0.2 LITHIUM SULPHATE 0.1 REMARK 280 BIS-TRIS PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.83750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.83750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.17300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.12850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.17300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.12850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.83750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.17300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.12850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.83750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.17300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.12850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 722 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 63 CE NZ REMARK 470 GLN A 97 CD OE1 NE2 REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 ILE B 257 CG1 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 328 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 16.76 58.87 REMARK 500 ASN A 70 -73.20 -126.39 REMARK 500 PRO A 95 -176.00 -65.69 REMARK 500 THR B 201 -76.89 -81.10 REMARK 500 ALA B 204 -80.91 -152.86 REMARK 500 LEU B 256 -88.44 -99.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 722 DISTANCE = 6.82 ANGSTROMS DBREF 6QCB A 1 97 UNP P07339 CATD_HUMAN 65 161 DBREF 6QCB B 107 347 UNP P07339 CATD_HUMAN 171 411 SEQRES 1 A 97 GLY PRO ILE PRO GLU VAL LEU LYS ASN TYR MET ASP ALA SEQRES 2 A 97 GLN TYR TYR GLY GLU ILE GLY ILE GLY THR PRO PRO GLN SEQRES 3 A 97 CYS PHE THR VAL VAL PHE ASP THR GLY SER SER ASN LEU SEQRES 4 A 97 TRP VAL PRO SER ILE HIS CYS LYS LEU LEU ASP ILE ALA SEQRES 5 A 97 CYS TRP ILE HIS HIS LYS TYR ASN SER ASP LYS SER SER SEQRES 6 A 97 THR TYR VAL LYS ASN GLY THR SER PHE ASP ILE HIS TYR SEQRES 7 A 97 GLY SER GLY SER LEU SER GLY TYR LEU SER GLN ASP THR SEQRES 8 A 97 VAL SER VAL PRO CYS GLN SEQRES 1 B 241 GLY VAL LYS VAL GLU ARG GLN VAL PHE GLY GLU ALA THR SEQRES 2 B 241 LYS GLN PRO GLY ILE THR PHE ILE ALA ALA LYS PHE ASP SEQRES 3 B 241 GLY ILE LEU GLY MET ALA TYR PRO ARG ILE SER VAL ASN SEQRES 4 B 241 ASN VAL LEU PRO VAL PHE ASP ASN LEU MET GLN GLN LYS SEQRES 5 B 241 LEU VAL ASP GLN ASN ILE PHE SER PHE TYR LEU SER ARG SEQRES 6 B 241 ASP PRO ASP ALA GLN PRO GLY GLY GLU LEU MET LEU GLY SEQRES 7 B 241 GLY THR ASP SER LYS TYR TYR LYS GLY SER LEU SER TYR SEQRES 8 B 241 LEU ASN VAL THR ARG LYS ALA TYR TRP GLN VAL HIS LEU SEQRES 9 B 241 ASP GLN VAL GLU VAL ALA SER GLY LEU THR LEU CYS LYS SEQRES 10 B 241 GLU GLY CYS GLU ALA ILE VAL ASP THR GLY THR SER LEU SEQRES 11 B 241 MET VAL GLY PRO VAL ASP GLU VAL ARG GLU LEU GLN LYS SEQRES 12 B 241 ALA ILE GLY ALA VAL PRO LEU ILE GLN GLY GLU TYR MET SEQRES 13 B 241 ILE PRO CYS GLU LYS VAL SER THR LEU PRO ALA ILE THR SEQRES 14 B 241 LEU LYS LEU GLY GLY LYS GLY TYR LYS LEU SER PRO GLU SEQRES 15 B 241 ASP TYR THR LEU LYS VAL SER GLN ALA GLY LYS THR LEU SEQRES 16 B 241 CYS LEU SER GLY PHE MET GLY MET ASP ILE PRO PRO PRO SEQRES 17 B 241 SER GLY PRO LEU TRP ILE LEU GLY ASP VAL PHE ILE GLY SEQRES 18 B 241 ARG TYR TYR THR VAL PHE ASP ARG ASP ASN ASN ARG VAL SEQRES 19 B 241 GLY PHE ALA GLU ALA ALA ARG HET NAG C 1 28 HET NAG C 2 28 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET PO3 A 101 4 HET HWE A 102 35 HET DMS A 105 4 HET SO4 B 404 5 HET SO4 B 405 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM PO3 PHOSPHITE ION HETNAM HWE (3~{S},7~{S},8~{S})-7-OXIDANYL-8-(PHENYLMETHYL)-3- HETNAM 2 HWE PROPAN-2-YL-1,4,9-TRIAZACYCLOHENICOSANE-2,5,10-TRIONE HETNAM DMS DIMETHYL SULFOXIDE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 5 PO3 O3 P 3- FORMUL 6 HWE C28 H45 N3 O4 FORMUL 7 DMS C2 H6 O S FORMUL 8 SO4 2(O4 S 2-) FORMUL 10 HOH *322(H2 O) HELIX 1 AA1 ASP A 50 ILE A 55 1 6 HELIX 2 AA2 ASN A 60 SER A 64 5 5 HELIX 3 AA3 TYR B 139 VAL B 147 5 9 HELIX 4 AA4 PRO B 149 GLN B 157 1 9 HELIX 5 AA5 ASP B 187 LYS B 189 5 3 HELIX 6 AA6 PRO B 240 GLY B 252 1 13 HELIX 7 AA7 PRO B 264 LEU B 271 5 8 HELIX 8 AA8 SER B 286 TYR B 290 1 5 HELIX 9 AA9 GLY B 322 ARG B 328 1 7 SHEET 1 AA1 9 VAL A 68 HIS A 77 0 SHEET 2 AA1 9 SER A 82 VAL A 94 -1 O LEU A 87 N GLY A 71 SHEET 3 AA1 9 GLN A 14 ILE A 21 -1 N GLY A 20 O SER A 93 SHEET 4 AA1 9 ILE A 3 TYR A 10 -1 N LYS A 8 O TYR A 16 SHEET 5 AA1 9 GLY B 179 LEU B 183 -1 O LEU B 183 N ILE A 3 SHEET 6 AA1 9 ILE B 164 LEU B 169 -1 N SER B 166 O MET B 182 SHEET 7 AA1 9 TYR B 329 ASP B 334 -1 O PHE B 333 N PHE B 165 SHEET 8 AA1 9 ARG B 339 ALA B 345 -1 O GLY B 341 N VAL B 332 SHEET 9 AA1 9 TYR B 191 ASN B 199 -1 N LEU B 198 O VAL B 340 SHEET 1 AA213 VAL A 68 HIS A 77 0 SHEET 2 AA213 SER A 82 VAL A 94 -1 O LEU A 87 N GLY A 71 SHEET 3 AA213 VAL B 108 LYS B 120 -1 O GLU B 117 N TYR A 86 SHEET 4 AA213 LEU A 39 PRO A 42 1 N VAL A 41 O ALA B 118 SHEET 5 AA213 GLY B 133 GLY B 136 -1 O ILE B 134 N TRP A 40 SHEET 6 AA213 GLN A 26 ASP A 33 1 N VAL A 31 O LEU B 135 SHEET 7 AA213 GLN A 14 ILE A 21 -1 N ILE A 19 O PHE A 28 SHEET 8 AA213 ILE A 3 TYR A 10 -1 N LYS A 8 O TYR A 16 SHEET 9 AA213 GLY B 179 LEU B 183 -1 O LEU B 183 N ILE A 3 SHEET 10 AA213 ILE B 164 LEU B 169 -1 N SER B 166 O MET B 182 SHEET 11 AA213 TYR B 329 ASP B 334 -1 O PHE B 333 N PHE B 165 SHEET 12 AA213 ARG B 339 ALA B 345 -1 O GLY B 341 N VAL B 332 SHEET 13 AA213 TYR B 191 ASN B 199 -1 N LEU B 198 O VAL B 340 SHEET 1 AA3 3 GLN B 207 LEU B 210 0 SHEET 2 AA3 3 CYS B 226 VAL B 230 -1 O ALA B 228 N VAL B 208 SHEET 3 AA3 3 TRP B 319 LEU B 321 1 O LEU B 321 N ILE B 229 SHEET 1 AA4 4 THR B 220 LEU B 221 0 SHEET 2 AA4 4 GLN B 212 VAL B 215 -1 N VAL B 213 O LEU B 221 SHEET 3 AA4 4 ILE B 274 LEU B 278 -1 O THR B 275 N GLU B 214 SHEET 4 AA4 4 LYS B 281 LEU B 285 -1 O TYR B 283 N LEU B 276 SHEET 1 AA5 2 MET B 237 GLY B 239 0 SHEET 2 AA5 2 PHE B 306 GLY B 308 1 O MET B 307 N MET B 237 SHEET 1 AA6 4 VAL B 254 PRO B 255 0 SHEET 2 AA6 4 TYR B 261 ILE B 263 -1 O MET B 262 N VAL B 254 SHEET 3 AA6 4 LYS B 299 SER B 304 -1 O SER B 304 N TYR B 261 SHEET 4 AA6 4 THR B 291 GLN B 296 -1 N LEU B 292 O LEU B 303 SSBOND 1 CYS A 27 CYS A 96 1555 1555 2.07 SSBOND 2 CYS A 46 CYS A 53 1555 1555 2.05 SSBOND 3 CYS B 222 CYS B 226 1555 1555 2.08 SSBOND 4 CYS B 265 CYS B 302 1555 1555 2.10 LINK ND2 ASN A 70 C1 ANAG C 1 1555 1555 1.46 LINK ND2 ASN A 70 C1 BNAG C 1 1555 1555 1.49 LINK ND2 ASN B 199 C1 NAG D 1 1555 1555 1.46 LINK O4 ANAG C 1 C1 ANAG C 2 1555 1555 1.44 LINK O4 BNAG C 1 C1 BNAG C 2 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 CISPEP 1 THR A 23 PRO A 24 0 -5.45 CISPEP 2 VAL A 94 PRO A 95 0 -12.36 CISPEP 3 GLN B 176 PRO B 177 0 -1.20 CISPEP 4 PRO B 313 PRO B 314 0 9.65 CISPEP 5 GLY B 316 PRO B 317 0 4.63 CRYST1 80.346 94.257 117.675 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008498 0.00000