HEADER IMMUNE SYSTEM 31-DEC-18 6QCU TITLE CRYSTAL STRUCTURE OF A FAB PORTION OF THE ANTI EBOV 3T0331 ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL: HEK293F; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL: HEK293F KEYWDS ANTIBODY, IMMUNE RESPONSE, VIRAL INFECTION, EBOV, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.DISKIN,H.COHEN-DVASHI REVDAT 1 02-OCT-19 6QCU 0 JRNL AUTH R.DISKIN,H.COHEN-DVASHI,S.EHRHARDT,M.ZEHNER,V.KRAHLING, JRNL AUTH 2 C.KREER,C.DAHLKE,M.S.ERCANOGLU,H.GRUELL,M.M.ADDO,S.BECKER, JRNL AUTH 3 F.KLEIN JRNL TITL RVSV-ZEBOV INDUCES A POLYCLONAL AND CONVERGENT B CELL JRNL TITL 2 RESPONSE WITH POTENT EBOLA VIRUS-NEUTRALIZING ANTIBODIES JRNL REF NAT.MED. (N.Y.) 2019 JRNL REFN ISSN 1078-8956 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3297: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 75878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 78.9920 - 4.6787 1.00 2974 167 0.1872 0.2000 REMARK 3 2 4.6787 - 3.7136 1.00 2797 140 0.1412 0.1832 REMARK 3 3 3.7136 - 3.2442 1.00 2756 144 0.1617 0.1779 REMARK 3 4 3.2442 - 2.9475 1.00 2710 155 0.1635 0.1985 REMARK 3 5 2.9475 - 2.7363 1.00 2727 124 0.1628 0.1752 REMARK 3 6 2.7363 - 2.5749 1.00 2709 134 0.1632 0.1752 REMARK 3 7 2.5749 - 2.4460 1.00 2700 120 0.1553 0.1666 REMARK 3 8 2.4460 - 2.3395 1.00 2647 147 0.1519 0.1818 REMARK 3 9 2.3395 - 2.2494 1.00 2692 136 0.1555 0.1712 REMARK 3 10 2.2494 - 2.1718 1.00 2647 131 0.1589 0.1951 REMARK 3 11 2.1718 - 2.1039 1.00 2683 134 0.1651 0.1809 REMARK 3 12 2.1039 - 2.0437 1.00 2651 149 0.1766 0.2096 REMARK 3 13 2.0437 - 1.9899 1.00 2625 145 0.1752 0.2143 REMARK 3 14 1.9899 - 1.9414 1.00 2654 134 0.1792 0.2363 REMARK 3 15 1.9414 - 1.8972 1.00 2629 135 0.1865 0.2417 REMARK 3 16 1.8972 - 1.8569 1.00 2621 150 0.2080 0.2432 REMARK 3 17 1.8569 - 1.8197 1.00 2637 155 0.2129 0.2258 REMARK 3 18 1.8197 - 1.7854 1.00 2598 152 0.2118 0.2418 REMARK 3 19 1.7854 - 1.7535 1.00 2638 139 0.2000 0.2277 REMARK 3 20 1.7535 - 1.7238 1.00 2659 130 0.2183 0.2536 REMARK 3 21 1.7238 - 1.6959 1.00 2631 136 0.2262 0.2393 REMARK 3 22 1.6959 - 1.6698 1.00 2626 146 0.2335 0.2739 REMARK 3 23 1.6698 - 1.6453 1.00 2627 126 0.2422 0.2749 REMARK 3 24 1.6453 - 1.6221 1.00 2618 141 0.2676 0.2830 REMARK 3 25 1.6221 - 1.6002 1.00 2595 148 0.2782 0.2821 REMARK 3 26 1.6002 - 1.5794 1.00 2632 120 0.2837 0.3364 REMARK 3 27 1.5794 - 1.5597 0.99 2626 131 0.2953 0.3319 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3375 REMARK 3 ANGLE : 1.144 4605 REMARK 3 CHIRALITY : 0.064 520 REMARK 3 PLANARITY : 0.008 590 REMARK 3 DIHEDRAL : 2.967 2754 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3226 59.8846 2.0494 REMARK 3 T TENSOR REMARK 3 T11: 0.1357 T22: 0.1098 REMARK 3 T33: 0.0958 T12: -0.0088 REMARK 3 T13: -0.0000 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.5052 L22: 0.9826 REMARK 3 L33: 1.1667 L12: -0.8270 REMARK 3 L13: -1.0260 L23: 0.1974 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: 0.0318 S13: 0.0318 REMARK 3 S21: 0.0313 S22: -0.0251 S23: -0.0018 REMARK 3 S31: 0.0104 S32: -0.0142 S33: 0.0140 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 102 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8492 44.8625 -8.6373 REMARK 3 T TENSOR REMARK 3 T11: 0.1507 T22: 0.1264 REMARK 3 T33: 0.0801 T12: -0.0047 REMARK 3 T13: 0.0095 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 2.5803 L22: 3.0179 REMARK 3 L33: 3.5172 L12: -0.5451 REMARK 3 L13: -2.2086 L23: 2.4816 REMARK 3 S TENSOR REMARK 3 S11: 0.3095 S12: 0.2028 S13: 0.2250 REMARK 3 S21: -0.2730 S22: -0.1482 S23: -0.3066 REMARK 3 S31: -0.1971 S32: 0.0208 S33: -0.0471 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 114 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2205 23.2496 -8.3820 REMARK 3 T TENSOR REMARK 3 T11: 0.2170 T22: 0.1448 REMARK 3 T33: 0.1904 T12: -0.0203 REMARK 3 T13: 0.0479 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 1.7954 L22: 3.3109 REMARK 3 L33: 1.7744 L12: 0.9316 REMARK 3 L13: -0.7985 L23: -0.4767 REMARK 3 S TENSOR REMARK 3 S11: -0.1534 S12: 0.1211 S13: -0.3031 REMARK 3 S21: 0.0222 S22: -0.0149 S23: 0.1556 REMARK 3 S31: 0.4222 S32: -0.2111 S33: 0.0792 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 2 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.2586 49.9585 18.2973 REMARK 3 T TENSOR REMARK 3 T11: 0.1081 T22: 0.1310 REMARK 3 T33: 0.1195 T12: 0.0000 REMARK 3 T13: 0.0101 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.3387 L22: 3.2967 REMARK 3 L33: 0.7695 L12: 1.4166 REMARK 3 L13: -0.2477 L23: -0.2758 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: -0.0717 S13: -0.1284 REMARK 3 S21: 0.0217 S22: -0.0716 S23: -0.2595 REMARK 3 S31: -0.0484 S32: 0.0415 S33: 0.0193 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 117 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0219 24.4650 7.5077 REMARK 3 T TENSOR REMARK 3 T11: 0.3173 T22: 0.1581 REMARK 3 T33: 0.1748 T12: 0.0032 REMARK 3 T13: 0.0696 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 5.0177 L22: 1.0986 REMARK 3 L33: 1.6770 L12: -0.3092 REMARK 3 L13: -1.7823 L23: 0.4996 REMARK 3 S TENSOR REMARK 3 S11: -0.1317 S12: -0.3247 S13: -0.3038 REMARK 3 S21: 0.3362 S22: -0.0164 S23: 0.1512 REMARK 3 S31: 0.3639 S32: 0.2023 S33: 0.1234 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QCU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1200013684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87313 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75996 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 78.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.13220 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M LISO4 MONOHYDRATE, 0.1M CITRIC REMARK 280 ACID PH3.5, 18% PEG 6000, 5% ETHYLEN GLYCOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.62267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.81133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.71700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.90567 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 179.52833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 143.62267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 71.81133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.90567 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 107.71700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 179.52833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 607 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 625 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 GLU H 1 REMARK 465 SER H 220 REMARK 465 CYS H 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 524 O HOH L 573 1.26 REMARK 500 HH21 ARG H 30 O HOH H 402 1.28 REMARK 500 HZ1 LYS L 107 O HOH L 401 1.41 REMARK 500 HZ3 LYS L 107 O HOH L 401 1.51 REMARK 500 NZ LYS L 107 O HOH L 401 1.77 REMARK 500 O HOH L 601 O HOH L 602 1.80 REMARK 500 O HOH L 401 O HOH L 404 1.81 REMARK 500 O HOH L 434 O HOH L 445 1.82 REMARK 500 O HOH L 594 O HOH H 594 1.84 REMARK 500 O HOH H 435 O HOH H 560 1.84 REMARK 500 O HOH L 403 O HOH L 609 1.87 REMARK 500 O HOH L 436 O HOH L 612 1.87 REMARK 500 O HOH L 611 O HOH L 634 1.89 REMARK 500 O1 SO4 H 302 O HOH H 401 1.92 REMARK 500 O HOH L 431 O HOH L 613 1.95 REMARK 500 NH2 ARG H 30 O HOH H 402 1.96 REMARK 500 O HOH H 407 O HOH H 430 1.97 REMARK 500 O HOH L 498 O HOH H 565 2.02 REMARK 500 O HOH H 456 O HOH H 640 2.02 REMARK 500 OG SER H 177 O HOH H 403 2.06 REMARK 500 O PRO L 40 O HOH L 402 2.07 REMARK 500 O HOH L 580 O HOH L 604 2.08 REMARK 500 O HOH H 521 O HOH H 635 2.08 REMARK 500 O HOH L 417 O HOH L 585 2.13 REMARK 500 O HOH L 541 O HOH L 588 2.14 REMARK 500 O HOH L 405 O HOH H 520 2.16 REMARK 500 O HOH H 423 O HOH H 425 2.16 REMARK 500 OG SER H 125 O HOH H 404 2.17 REMARK 500 O HOH L 432 O HOH H 618 2.18 REMARK 500 O HOH L 617 O HOH H 565 2.18 REMARK 500 O HOH L 433 O HOH L 566 2.18 REMARK 500 O HOH H 543 O HOH H 589 2.19 REMARK 500 O HOH L 487 O HOH L 580 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 403 O HOH H 588 10665 1.72 REMARK 500 O HOH L 511 O HOH H 614 6664 1.82 REMARK 500 O HOH L 482 O HOH H 615 8665 1.85 REMARK 500 O HOH H 434 O HOH H 577 8665 2.10 REMARK 500 O HOH L 441 O HOH H 558 6664 2.13 REMARK 500 O HOH L 585 O HOH H 586 10665 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 45 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG L 45 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 CYS L 194 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG H 72 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG H 72 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 30 -124.94 54.41 REMARK 500 ALA L 51 -32.22 67.53 REMARK 500 ALA L 84 168.18 178.52 REMARK 500 ASN L 138 70.10 59.90 REMARK 500 ALA H 57 69.16 -101.65 REMARK 500 ASP H 149 67.47 70.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 662 DISTANCE = 6.63 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 303 DBREF 6QCU L 1 214 PDB 6QCU 6QCU 1 214 DBREF 6QCU H 1 221 PDB 6QCU 6QCU 1 221 SEQRES 1 L 214 GLU ILE VAL LEU THR GLN SER PRO ALA THR LEU SER LEU SEQRES 2 L 214 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 214 GLN SER VAL SER THR TYR LEU ALA TRP TYR GLN HIS GLN SEQRES 4 L 214 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLU ALA SER SEQRES 5 L 214 ASN ARG ALA THR GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLU PRO GLU ASP VAL ALA VAL TYR TYR CYS GLN GLN ARG SEQRES 8 L 214 ALA SER TRP PRO LEU THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 H 224 GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 224 PRO GLY GLY SER LEU ARG LEU SER CYS GLU ALA SER GLY SEQRES 3 H 224 PHE PRO LEU ARG ASP TYR ALA MET SER TRP VAL ARG GLN SEQRES 4 H 224 ALA PRO GLY ARG GLY LEU GLN TRP VAL SER THR ILE GLY SEQRES 5 H 224 GLY ASN ASP ASN ALA ALA ASN TYR ALA ASP SER VAL LYS SEQRES 6 H 224 GLY ARG PHE THR VAL SER ARG ASP ASN SER LYS SER THR SEQRES 7 H 224 ILE TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 224 ALA LEU TYR PHE CYS ALA LYS SER VAL ARG LEU SER ARG SEQRES 9 H 224 PRO SER PRO PHE ASP LEU TRP GLY GLN GLY SER LEU VAL SEQRES 10 H 224 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 224 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 224 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 224 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 224 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 224 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 224 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 224 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 18 H 224 LYS SER CYS HET SO4 L 301 5 HET SO4 H 301 5 HET SO4 H 302 5 HET SO4 H 303 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *507(H2 O) HELIX 1 AA1 GLU L 79 VAL L 83 5 5 HELIX 2 AA2 SER L 121 SER L 127 1 7 HELIX 3 AA3 LYS L 183 HIS L 189 1 7 HELIX 4 AA4 PRO H 28 TYR H 32 5 5 HELIX 5 AA5 ASP H 62 LYS H 65 5 4 HELIX 6 AA6 ASN H 74 LYS H 76 5 3 HELIX 7 AA7 ARG H 84 THR H 88 5 5 HELIX 8 AA8 SER H 161 ALA H 163 5 3 HELIX 9 AA9 SER H 192 LEU H 194 5 3 HELIX 10 AB1 LYS H 206 ASN H 209 5 4 SHEET 1 AA1 4 LEU L 4 SER L 7 0 SHEET 2 AA1 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA1 4 GLU L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 AA1 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA2 6 THR L 10 LEU L 13 0 SHEET 2 AA2 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA2 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA2 6 LEU L 33 HIS L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 AA2 6 ARG L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA2 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA3 4 THR L 10 LEU L 13 0 SHEET 2 AA3 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA3 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA3 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA4 4 SER L 114 PHE L 118 0 SHEET 2 AA4 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AA4 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AA4 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AA5 4 ALA L 153 LEU L 154 0 SHEET 2 AA5 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AA5 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AA5 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AA6 4 GLN H 3 SER H 7 0 SHEET 2 AA6 4 LEU H 18 SER H 25 -1 O GLU H 23 N LEU H 5 SHEET 3 AA6 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA6 4 PHE H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA7 6 GLY H 10 VAL H 12 0 SHEET 2 AA7 6 SER H 112 VAL H 116 1 O THR H 115 N VAL H 12 SHEET 3 AA7 6 ALA H 89 SER H 96 -1 N TYR H 91 O SER H 112 SHEET 4 AA7 6 MET H 34 GLN H 39 -1 N VAL H 37 O PHE H 92 SHEET 5 AA7 6 GLN H 46 ILE H 51 -1 O GLN H 46 N ARG H 38 SHEET 6 AA7 6 ALA H 58 TYR H 60 -1 O ASN H 59 N THR H 50 SHEET 1 AA8 4 GLY H 10 VAL H 12 0 SHEET 2 AA8 4 SER H 112 VAL H 116 1 O THR H 115 N VAL H 12 SHEET 3 AA8 4 ALA H 89 SER H 96 -1 N TYR H 91 O SER H 112 SHEET 4 AA8 4 PHE H 105 TRP H 108 -1 O LEU H 107 N LYS H 95 SHEET 1 AA9 4 SER H 125 LEU H 129 0 SHEET 2 AA9 4 THR H 140 TYR H 150 -1 O LEU H 146 N PHE H 127 SHEET 3 AA9 4 TYR H 181 PRO H 190 -1 O LEU H 183 N VAL H 147 SHEET 4 AA9 4 VAL H 168 THR H 170 -1 N HIS H 169 O VAL H 186 SHEET 1 AB1 4 SER H 125 LEU H 129 0 SHEET 2 AB1 4 THR H 140 TYR H 150 -1 O LEU H 146 N PHE H 127 SHEET 3 AB1 4 TYR H 181 PRO H 190 -1 O LEU H 183 N VAL H 147 SHEET 4 AB1 4 VAL H 174 LEU H 175 -1 N VAL H 174 O SER H 182 SHEET 1 AB2 3 THR H 156 TRP H 159 0 SHEET 2 AB2 3 ILE H 200 HIS H 205 -1 O ASN H 202 N SER H 158 SHEET 3 AB2 3 THR H 210 ARG H 215 -1 O VAL H 212 N VAL H 203 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.14 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.02 SSBOND 3 CYS H 22 CYS H 93 1555 1555 2.09 SSBOND 4 CYS H 145 CYS H 201 1555 1555 2.05 CISPEP 1 SER L 7 PRO L 8 0 -9.27 CISPEP 2 TRP L 94 PRO L 95 0 -5.08 CISPEP 3 TYR L 140 PRO L 141 0 1.91 CISPEP 4 SER H 103 PRO H 104 0 6.01 CISPEP 5 PHE H 151 PRO H 152 0 -8.01 CISPEP 6 GLU H 153 PRO H 154 0 -1.98 SITE 1 AC1 4 ARG H 84 ALA H 85 GLU H 86 ARG L 108 SITE 1 AC2 7 GLN H 46 ALA H 61 ASP H 62 SER H 63 SITE 2 AC2 7 GLY H 139 HOH H 406 HOH H 577 SITE 1 AC3 5 ARG H 98 ARG H 101 HOH H 401 TYR L 32 SITE 2 AC3 5 ARG L 91 SITE 1 AC4 6 GLY H 8 GLY H 9 SER H 112 HOH H 419 SITE 2 AC4 6 HOH H 428 HOH H 479 CRYST1 91.095 91.095 215.434 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010978 0.006338 0.000000 0.00000 SCALE2 0.000000 0.012676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004642 0.00000