HEADER CHAPERONE 02-JAN-19 6QDR TITLE CRYSTAL STRUCTURE OF 14-3-3SIGMA IN COMPLEX WITH A PAK6 PT99 TITLE 2 PHOSPHOPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL MARKER PROTEIN 1,STRATIFIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 6; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PAK-5,P21-ACTIVATED KINASE 6,PAK-6; COMPND 10 EC: 2.7.11.1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFN, HME1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NEURON REGENERATION, PPI, PHOSPHORYLATION, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR S.A.ANDREI,A.KAPLAN,A.E.FOURNIER,C.OTTMAN REVDAT 4 24-JAN-24 6QDR 1 REMARK REVDAT 3 11-AUG-21 6QDR 1 JRNL LINK REVDAT 2 19-FEB-20 6QDR 1 REMARK ATOM REVDAT 1 29-JAN-20 6QDR 0 JRNL AUTH A.KAPLAN,S.A.ANDREI,A.VAN REGTEREN ALTENA,T.SIMAS, JRNL AUTH 2 S.L.BANERJEE,N.KATO,N.BISSON,Y.HIGUCHI,C.OTTMANN, JRNL AUTH 3 A.E.FOURNIER JRNL TITL POLYPHARMACOLOGICAL PERTURBATION OF THE 14-3-3 ADAPTOR JRNL TITL 2 PROTEIN INTERACTOME STIMULATES NEURITE OUTGROWTH. JRNL REF CELL CHEM BIOL V. 27 657 2020 JRNL REFN ESSN 2451-9456 JRNL PMID 32220335 JRNL DOI 10.1016/J.CHEMBIOL.2020.02.010 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.4 REMARK 3 NUMBER OF REFLECTIONS : 31435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8530 - 3.5916 1.00 3437 168 0.1577 0.1682 REMARK 3 2 3.5916 - 2.8510 1.00 3298 177 0.1387 0.1704 REMARK 3 3 2.8510 - 2.4906 1.00 3260 177 0.1437 0.1798 REMARK 3 4 2.4906 - 2.2629 1.00 3257 188 0.1378 0.1905 REMARK 3 5 2.2629 - 2.1007 1.00 3235 165 0.1389 0.1888 REMARK 3 6 2.1007 - 1.9769 1.00 3249 167 0.1440 0.1825 REMARK 3 7 1.9769 - 1.8779 1.00 3238 142 0.1620 0.1680 REMARK 3 8 1.8779 - 1.7961 0.98 3165 156 0.1778 0.2101 REMARK 3 9 1.7961 - 1.7270 0.73 2353 128 0.1915 0.2218 REMARK 3 10 1.7270 - 1.6674 0.37 1184 64 0.2123 0.2427 REMARK 3 11 1.6674 - 1.6153 0.07 220 7 0.2169 0.3186 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QDR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1200013704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31456 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.615 REMARK 200 RESOLUTION RANGE LOW (A) : 41.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.4 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 3.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 4JC3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.19 M CACL2, 5% V/V GLYCEROL, 28 % REMARK 280 PEG400, 0.095 M HEPES, PH 7.1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.33350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.33350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.23950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.19850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.23950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.19850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.33350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.23950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.19850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.33350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.23950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.19850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 815 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 ACE B 93 REMARK 465 VAL B 94 REMARK 465 ILE B 95 REMARK 465 GLY B 102 REMARK 465 ARG B 103 REMARK 465 SER B 104 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 96 OG REMARK 470 ARG B 101 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 77 O HOH A 412 1.49 REMARK 500 O HOH A 463 O HOH A 531 1.85 REMARK 500 O HOH A 402 O HOH A 620 1.92 REMARK 500 O HOH A 478 O HOH A 760 1.93 REMARK 500 O HOH A 666 O HOH A 708 1.96 REMARK 500 O HOH A 609 O HOH A 678 1.99 REMARK 500 O HOH A 693 O HOH A 700 2.00 REMARK 500 O HOH A 662 O HOH A 787 2.00 REMARK 500 O HOH A 643 O HOH A 648 2.01 REMARK 500 O HOH A 702 O HOH A 745 2.01 REMARK 500 O HOH A 558 O HOH A 685 2.02 REMARK 500 O HOH A 489 O HOH A 531 2.03 REMARK 500 O HOH A 606 O HOH A 634 2.04 REMARK 500 O HOH A 420 O HOH A 742 2.04 REMARK 500 O HOH A 587 O HOH A 662 2.07 REMARK 500 O HOH A 781 O HOH B 210 2.07 REMARK 500 O HOH A 463 O HOH A 626 2.07 REMARK 500 O HOH A 435 O HOH A 710 2.08 REMARK 500 O HOH A 676 O HOH A 788 2.08 REMARK 500 O HOH A 481 O HOH A 518 2.09 REMARK 500 O HOH A 431 O HOH A 698 2.09 REMARK 500 O HOH A 616 O HOH A 710 2.10 REMARK 500 O HOH A 424 O HOH A 720 2.11 REMARK 500 O HOH A 661 O HOH A 793 2.13 REMARK 500 O HOH B 201 O HOH B 202 2.14 REMARK 500 OE1 GLU A 153 O HOH A 401 2.14 REMARK 500 O ALA A -3 O HOH A 402 2.14 REMARK 500 O HOH A 708 O HOH A 791 2.15 REMARK 500 O HOH A 722 O HOH A 805 2.15 REMARK 500 O HOH A 637 O HOH A 689 2.15 REMARK 500 O HOH A 647 O HOH A 757 2.16 REMARK 500 O HOH A 664 O HOH A 685 2.17 REMARK 500 O HOH A 430 O HOH A 580 2.17 REMARK 500 OE2 GLU A 210 O HOH A 403 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 110 HH TYR A 213 8555 1.58 REMARK 500 O HOH A 756 O HOH A 786 2654 2.02 REMARK 500 O HOH A 418 O HOH A 670 3555 2.02 REMARK 500 O HOH A 412 O HOH A 610 7545 2.03 REMARK 500 OE2 GLU A 110 OH TYR A 213 8555 2.11 REMARK 500 O HOH A 648 O HOH A 648 3654 2.11 REMARK 500 O HOH A 768 O HOH A 814 4555 2.14 REMARK 500 O HOH A 705 O HOH A 727 6555 2.15 REMARK 500 O HOH A 813 O HOH A 813 3655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 77.29 -107.48 REMARK 500 ARG A 18 77.29 -103.54 REMARK 500 HIS A 106 38.83 -144.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 815 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 816 DISTANCE = 6.71 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A -1 O REMARK 620 2 HOH A 444 O 78.4 REMARK 620 3 HOH A 534 O 75.6 76.8 REMARK 620 4 HOH A 572 O 71.8 135.0 125.0 REMARK 620 5 HOH A 790 O 145.9 112.6 75.9 111.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 2 OE1 REMARK 620 2 GLU A 2 OE1 0.0 REMARK 620 3 HOH A 487 O 81.7 81.7 REMARK 620 4 HOH A 487 O 84.4 84.4 146.2 REMARK 620 5 HOH A 666 O 89.2 89.2 141.5 68.4 REMARK 620 6 HOH A 666 O 142.2 142.2 64.3 114.5 127.6 REMARK 620 7 HOH A 708 O 97.4 97.4 95.7 116.6 48.3 101.8 REMARK 620 8 HOH A 708 O 159.8 159.8 103.7 80.6 97.7 39.4 101.4 REMARK 620 9 HOH A 791 O 135.7 135.7 75.5 133.0 85.9 52.7 49.1 64.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 8 OE1 REMARK 620 2 GLN A 8 OE1 46.3 REMARK 620 3 LYS A 77 O 28.4 59.0 REMARK 620 4 GLU A 80 OE1 30.6 59.8 2.2 REMARK 620 5 GLU A 80 OE2 32.9 61.9 4.5 2.5 REMARK 620 6 HOH A 406 O 33.1 64.3 5.6 4.6 3.0 REMARK 620 7 HOH A 444 O 33.3 61.6 4.8 2.7 0.7 3.6 REMARK 620 8 HOH A 677 O 30.8 61.5 2.7 2.0 2.4 3.0 3.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE1 REMARK 620 2 GLU A 35 OE2 51.0 REMARK 620 3 GLU A 110 O 86.2 88.5 REMARK 620 4 GLU A 110 O 81.4 83.9 5.2 REMARK 620 5 GLU A 188 OE2 87.5 122.4 45.3 47.5 REMARK 620 6 HOH A 541 O 132.7 82.1 86.4 88.3 118.0 REMARK 620 7 HOH A 635 O 148.8 157.9 100.5 105.7 76.6 78.4 REMARK 620 8 HOH A 660 O 87.6 80.8 169.2 164.6 143.2 91.3 89.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 75 OE1 REMARK 620 2 GLU A 161 O 68.4 REMARK 620 3 HOH A 494 O 67.4 1.2 REMARK 620 4 HOH A 550 O 68.3 2.8 3.4 REMARK 620 5 HOH A 642 O 66.1 2.6 2.1 2.7 REMARK 620 6 HOH A 668 O 67.1 3.0 3.3 1.1 1.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 86 OE1 REMARK 620 2 GLU A 86 OE2 56.8 REMARK 620 3 GLU A 89 OE2 103.1 92.3 REMARK 620 4 HOH A 421 O 85.2 140.4 85.6 REMARK 620 5 HOH A 426 O 136.9 81.8 64.2 130.8 REMARK 620 6 HOH A 655 O 152.1 151.1 79.9 67.2 69.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 307 DBREF 6QDR A 1 231 UNP P31947 1433S_HUMAN 1 231 DBREF 6QDR B 93 104 UNP Q9NQU5 PAK6_HUMAN 93 104 SEQADV 6QDR GLY A -4 UNP P31947 EXPRESSION TAG SEQADV 6QDR ALA A -3 UNP P31947 EXPRESSION TAG SEQADV 6QDR MET A -2 UNP P31947 EXPRESSION TAG SEQADV 6QDR GLY A -1 UNP P31947 EXPRESSION TAG SEQADV 6QDR SER A 0 UNP P31947 EXPRESSION TAG SEQADV 6QDR ACE B 93 UNP Q9NQU5 SER 93 ACETYLATION SEQRES 1 A 236 GLY ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN SEQRES 2 A 236 LYS ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP SEQRES 3 A 236 MET ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU SEQRES 4 A 236 GLU LEU SER CYS GLU GLU ARG ASN LEU LEU SER VAL ALA SEQRES 5 A 236 TYR LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG SEQRES 6 A 236 VAL LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SEQRES 7 A 236 SER GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU SEQRES 8 A 236 LYS VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL SEQRES 9 A 236 LEU GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY SEQRES 10 A 236 ASP ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY SEQRES 11 A 236 ASP TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP SEQRES 12 A 236 ASP LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR SEQRES 13 A 236 GLN GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO SEQRES 14 A 236 THR ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER SEQRES 15 A 236 VAL PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA SEQRES 16 A 236 ILE SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA SEQRES 17 A 236 ASP LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER SEQRES 18 A 236 THR LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU SEQRES 19 A 236 TRP THR SEQRES 1 B 12 ACE VAL ILE SER SER ASN TPO LEU ARG GLY ARG SER MODRES 6QDR TPO B 99 THR MODIFIED RESIDUE HET TPO B 99 16 HET CA A 301 1 HET CA A 302 1 HET CL A 303 1 HET MG A 304 1 HET NA A 305 1 HET NA A 306 1 HET NA A 307 1 HETNAM TPO PHOSPHOTHREONINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 2 TPO C4 H10 N O6 P FORMUL 3 CA 2(CA 2+) FORMUL 5 CL CL 1- FORMUL 6 MG MG 2+ FORMUL 7 NA 3(NA 1+) FORMUL 10 HOH *426(H2 O) HELIX 1 AA1 GLU A 2 ALA A 16 1 15 HELIX 2 AA2 ARG A 18 LYS A 32 1 15 HELIX 3 AA3 SER A 37 ASN A 70 1 34 HELIX 4 AA4 PRO A 79 SER A 105 1 27 HELIX 5 AA5 HIS A 106 ALA A 111 1 6 HELIX 6 AA6 ASP A 113 ALA A 135 1 23 HELIX 7 AA7 ASP A 139 MET A 162 1 24 HELIX 8 AA8 ASN A 166 ILE A 183 1 18 HELIX 9 AA9 SER A 186 ALA A 203 1 18 HELIX 10 AB1 ASP A 204 LEU A 208 5 5 HELIX 11 AB2 SER A 209 THR A 231 1 23 LINK C ASN B 98 N TPO B 99 1555 1555 1.33 LINK C TPO B 99 N LEU B 100 1555 1555 1.33 LINK O GLY A -1 NA NA A 307 1555 1555 2.80 LINK OE1 GLU A 2 CA CA A 302 1555 1555 2.25 LINK OE1 GLU A 2 CA CA A 302 1555 3654 2.73 LINK OE1AGLN A 8 NA NA A 306 1555 4555 2.78 LINK OE1BGLN A 8 NA NA A 306 1555 4555 2.82 LINK OE1 GLU A 35 CA CA A 301 1555 1555 2.68 LINK OE2 GLU A 35 CA CA A 301 1555 1555 2.36 LINK OE1 GLU A 75 MG MG A 304 1555 7545 2.35 LINK O LYS A 77 NA NA A 306 1555 1555 2.39 LINK OE1 GLU A 80 NA NA A 306 1555 1555 2.44 LINK OE2 GLU A 80 NA NA A 306 1555 1555 2.86 LINK OE1BGLU A 86 NA NA A 305 1555 1555 2.36 LINK OE2BGLU A 86 NA NA A 305 1555 1555 2.26 LINK OE2 GLU A 89 NA NA A 305 1555 1555 2.54 LINK O AGLU A 110 CA CA A 301 1555 1555 2.26 LINK O BGLU A 110 CA CA A 301 1555 1555 2.29 LINK O GLU A 161 MG MG A 304 1555 1555 2.28 LINK OE2 GLU A 188 CA CA A 301 1555 6555 2.37 LINK CA CA A 301 O HOH A 541 1555 1555 2.32 LINK CA CA A 301 O HOH A 635 1555 6554 2.42 LINK CA CA A 301 O HOH A 660 1555 1555 2.48 LINK CA CA A 302 O HOH A 487 1555 1555 2.44 LINK CA CA A 302 O HOH A 487 1555 3654 2.59 LINK CA CA A 302 O HOH A 666 1555 1555 2.29 LINK CA CA A 302 O HOH A 666 1555 3654 2.72 LINK CA CA A 302 O HOH A 708 1555 1555 2.49 LINK CA CA A 302 O HOH A 708 1555 3654 3.04 LINK CA CA A 302 O HOH A 791 1555 1555 2.67 LINK CA CA A 302 O HOH A 791 1555 3654 2.80 LINK MG MG A 304 O HOH A 494 1555 1555 2.45 LINK MG MG A 304 O HOH A 550 1555 1555 2.61 LINK MG MG A 304 O HOH A 642 1555 1555 2.37 LINK MG MG A 304 O HOH A 668 1555 6554 2.23 LINK NA NA A 305 O HOH A 421 1555 1555 2.19 LINK NA NA A 305 O HOH A 426 1555 1555 2.23 LINK NA NA A 305 O HOH A 655 1555 1555 2.53 LINK NA NA A 306 O HOH A 406 1555 4555 2.67 LINK NA NA A 306 O HOH A 444 1555 1555 2.88 LINK NA NA A 306 O HOH A 677 1555 1555 2.42 LINK NA NA A 307 O HOH A 444 1555 2654 2.86 LINK NA NA A 307 O HOH A 534 1555 3654 2.60 LINK NA NA A 307 O HOH A 572 1555 1555 2.31 LINK NA NA A 307 O HOH A 790 1555 8555 2.46 CISPEP 1 SER A 105 HIS A 106 0 6.48 SITE 1 AC1 6 GLU A 35 GLU A 110 GLU A 188 HOH A 541 SITE 2 AC1 6 HOH A 635 HOH A 660 SITE 1 AC2 5 GLU A 2 HOH A 487 HOH A 666 HOH A 708 SITE 2 AC2 5 HOH A 791 SITE 1 AC3 2 LYS A 9 HOH A 748 SITE 1 AC4 6 GLU A 75 GLU A 161 HOH A 494 HOH A 550 SITE 2 AC4 6 HOH A 642 HOH A 668 SITE 1 AC5 5 GLU A 86 GLU A 89 HOH A 421 HOH A 426 SITE 2 AC5 5 HOH A 655 SITE 1 AC6 6 GLN A 8 LYS A 77 GLU A 80 HOH A 406 SITE 2 AC6 6 HOH A 444 HOH A 677 SITE 1 AC7 5 GLY A -1 HOH A 444 HOH A 534 HOH A 572 SITE 2 AC7 5 HOH A 790 CRYST1 82.479 112.397 62.667 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012124 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015957 0.00000