HEADER CHAPERONE 02-JAN-19 6QDS TITLE CRYSTAL STRUCTURE OF 14-3-3SIGMA IN COMPLEX WITH A PAK6 PT99 TITLE 2 PHOSPHOPEPTIDE STABILIZED BY SEMI-SYNTHETIC FUSICOCCANE FC-NCPC COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL MARKER PROTEIN 1,STRATIFIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 6; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PAK-5,P21-ACTIVATED KINASE 6,PAK-6; COMPND 10 EC: 2.7.11.1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFN, HME1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NEURON REGENERATION, PPI, PHOSPHORYLATION, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR S.A.ANDREI,A.KAPLAN,A.E.FOURNIER,C.OTTMAN REVDAT 3 24-JAN-24 6QDS 1 REMARK REVDAT 2 11-AUG-21 6QDS 1 JRNL LINK REVDAT 1 29-JAN-20 6QDS 0 JRNL AUTH A.KAPLAN,S.A.ANDREI,A.VAN REGTEREN ALTENA,T.SIMAS, JRNL AUTH 2 S.L.BANERJEE,N.KATO,N.BISSON,Y.HIGUCHI,C.OTTMANN, JRNL AUTH 3 A.E.FOURNIER JRNL TITL POLYPHARMACOLOGICAL PERTURBATION OF THE 14-3-3 ADAPTOR JRNL TITL 2 PROTEIN INTERACTOME STIMULATES NEURITE OUTGROWTH. JRNL REF CELL CHEM BIOL V. 27 657 2020 JRNL REFN ESSN 2451-9456 JRNL PMID 32220335 JRNL DOI 10.1016/J.CHEMBIOL.2020.02.010 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 30708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.5201 - 3.8214 1.00 2839 144 0.1668 0.1792 REMARK 3 2 3.8214 - 3.0347 1.00 2704 155 0.1454 0.1769 REMARK 3 3 3.0347 - 2.6516 1.00 2710 128 0.1608 0.2172 REMARK 3 4 2.6516 - 2.4093 1.00 2675 139 0.1556 0.1752 REMARK 3 5 2.4093 - 2.2368 1.00 2670 135 0.1389 0.1669 REMARK 3 6 2.2368 - 2.1049 1.00 2674 139 0.1449 0.1793 REMARK 3 7 2.1049 - 1.9996 1.00 2662 148 0.1814 0.2166 REMARK 3 8 1.9996 - 1.9126 1.00 2658 119 0.1911 0.2526 REMARK 3 9 1.9126 - 1.8390 0.99 2628 145 0.2144 0.2621 REMARK 3 10 1.8390 - 1.7755 0.98 2609 142 0.2379 0.2604 REMARK 3 11 1.7755 - 1.7200 0.89 2356 129 0.2687 0.2794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2007 13.4865 -8.1595 REMARK 3 T TENSOR REMARK 3 T11: 0.0682 T22: 0.0693 REMARK 3 T33: 0.0590 T12: 0.0069 REMARK 3 T13: 0.0091 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.2889 L22: 2.0169 REMARK 3 L33: 2.5883 L12: 0.2537 REMARK 3 L13: -0.5712 L23: -0.0264 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: -0.0669 S13: -0.0359 REMARK 3 S21: -0.0487 S22: 0.0101 S23: 0.0132 REMARK 3 S31: 0.0896 S32: 0.0416 S33: 0.0029 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7470 7.4640 8.8126 REMARK 3 T TENSOR REMARK 3 T11: 0.1073 T22: 0.0875 REMARK 3 T33: 0.1004 T12: 0.0344 REMARK 3 T13: 0.0372 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.7126 L22: 2.4725 REMARK 3 L33: 2.3273 L12: 0.1718 REMARK 3 L13: -0.2550 L23: -1.7223 REMARK 3 S TENSOR REMARK 3 S11: -0.0676 S12: -0.0435 S13: -0.0813 REMARK 3 S21: 0.2786 S22: 0.1510 S23: 0.1818 REMARK 3 S31: -0.0926 S32: -0.2311 S33: -0.1339 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7176 -11.7964 27.7482 REMARK 3 T TENSOR REMARK 3 T11: 0.6152 T22: 0.5869 REMARK 3 T33: 0.4425 T12: -0.0804 REMARK 3 T13: 0.1860 T23: 0.1429 REMARK 3 L TENSOR REMARK 3 L11: 3.8976 L22: 1.0009 REMARK 3 L33: 1.0265 L12: 1.8179 REMARK 3 L13: 0.1359 L23: -0.3336 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: -0.9530 S13: -0.3982 REMARK 3 S21: 1.1189 S22: 0.1493 S23: 0.8621 REMARK 3 S31: 0.3049 S32: -1.1297 S33: -0.0736 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2723 14.9807 9.9105 REMARK 3 T TENSOR REMARK 3 T11: 0.0891 T22: 0.0936 REMARK 3 T33: 0.0916 T12: 0.0228 REMARK 3 T13: -0.0108 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.7815 L22: 3.6010 REMARK 3 L33: 0.9510 L12: -1.1260 REMARK 3 L13: 0.2260 L23: -1.1032 REMARK 3 S TENSOR REMARK 3 S11: -0.0301 S12: -0.0013 S13: 0.1056 REMARK 3 S21: 0.1858 S22: 0.0245 S23: -0.1960 REMARK 3 S31: -0.0725 S32: 0.0062 S33: 0.0565 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6901 26.9510 16.0909 REMARK 3 T TENSOR REMARK 3 T11: 0.1694 T22: 0.1037 REMARK 3 T33: 0.1270 T12: 0.0251 REMARK 3 T13: -0.0235 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 2.7181 L22: 2.2333 REMARK 3 L33: 4.8825 L12: -0.9461 REMARK 3 L13: 1.0738 L23: -1.3368 REMARK 3 S TENSOR REMARK 3 S11: -0.2200 S12: -0.1570 S13: 0.2350 REMARK 3 S21: 0.6017 S22: 0.2263 S23: -0.2129 REMARK 3 S31: -0.3742 S32: -0.0280 S33: 0.0622 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3227 23.6389 11.0887 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.1544 REMARK 3 T33: 0.1438 T12: 0.0178 REMARK 3 T13: 0.0048 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.3528 L22: 2.1889 REMARK 3 L33: 2.2410 L12: -0.9683 REMARK 3 L13: 0.2851 L23: -0.0804 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: 0.0703 S13: -0.0797 REMARK 3 S21: -0.0604 S22: -0.0467 S23: 0.2230 REMARK 3 S31: 0.0812 S32: -0.3776 S33: -0.0183 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2596 13.4859 10.4878 REMARK 3 T TENSOR REMARK 3 T11: 0.3346 T22: 0.5051 REMARK 3 T33: 0.3173 T12: 0.0159 REMARK 3 T13: 0.0904 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.1193 L22: 3.7391 REMARK 3 L33: 2.1546 L12: -1.4313 REMARK 3 L13: -0.4433 L23: 2.7423 REMARK 3 S TENSOR REMARK 3 S11: -0.0556 S12: 0.1497 S13: -0.2404 REMARK 3 S21: 0.5327 S22: -0.0343 S23: 0.4798 REMARK 3 S31: 0.6345 S32: -1.5811 S33: 0.1408 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QDS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1200013705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31576 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 25.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 4JC3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.19 M CACL2, 5 % V/V GLYCEROL, 28 % REMARK 280 PEG 400, 0.095 M HEPES, PH 7.1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.31000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.31000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.21000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.88500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.21000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.88500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.31000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.21000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.88500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.31000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.21000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.88500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 432 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 749 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 137 REMARK 465 ASP A 138 REMARK 465 ACE B 93 REMARK 465 VAL B 94 REMARK 465 ILE B 95 REMARK 465 SER B 96 REMARK 465 GLY B 102 REMARK 465 ARG B 103 REMARK 465 SER B 104 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 101 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 109 O HOH A 405 1.30 REMARK 500 HG SER A 45 O HOH A 417 1.56 REMARK 500 HE ARG A 60 O HOH A 426 1.56 REMARK 500 O HOH A 469 O HOH A 691 1.76 REMARK 500 O HOH A 418 O HOH A 615 1.79 REMARK 500 OE2 GLU A 75 O HOH A 401 1.83 REMARK 500 O HOH A 704 O HOH A 735 1.89 REMARK 500 N GLY A 73 O HOH A 402 1.97 REMARK 500 O HOH A 584 O HOH A 644 1.98 REMARK 500 O HOH A 646 O HOH A 744 1.98 REMARK 500 O HOH A 504 O HOH A 659 1.99 REMARK 500 OE2 GLU A 72 O HOH A 403 2.00 REMARK 500 N GLY A -4 O HOH A 404 2.05 REMARK 500 O HOH A 661 O HOH A 699 2.06 REMARK 500 NZ LYS A 109 O HOH A 405 2.06 REMARK 500 O HOH A 561 O HOH A 691 2.10 REMARK 500 OD2 ASP A 139 O HOH A 406 2.11 REMARK 500 OE2 GLU A 35 O HOH A 407 2.12 REMARK 500 O HOH A 604 O HOH A 624 2.12 REMARK 500 O HOH A 420 O HOH A 569 2.12 REMARK 500 O HOH A 721 O HOH A 730 2.12 REMARK 500 OE1 GLU A 153 O HOH A 408 2.13 REMARK 500 OE1 GLN A 8 O HOH A 409 2.14 REMARK 500 O HOH A 419 O HOH A 468 2.14 REMARK 500 O HOH A 605 O HOH A 712 2.15 REMARK 500 OE1 GLU A 75 O HOH A 410 2.15 REMARK 500 O HOH A 419 O HOH A 483 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 34 HZ3 LYS A 195 6554 1.54 REMARK 500 O HOH A 403 O HOH A 416 4556 2.08 REMARK 500 O HOH A 410 O HOH A 595 7545 2.13 REMARK 500 O HOH A 724 O HOH A 745 4555 2.14 REMARK 500 O HOH A 715 O HOH A 715 3655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 76.56 -103.91 REMARK 500 ARG A 18 76.56 -102.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 748 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 749 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 750 DISTANCE = 6.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 2 OE1 REMARK 620 2 HOH A 432 O 56.5 REMARK 620 3 HOH A 432 O 56.5 0.0 REMARK 620 4 HOH A 462 O 70.9 63.0 63.0 REMARK 620 5 HOH A 598 O 73.4 129.1 129.1 94.5 REMARK 620 6 HOH A 636 O 159.2 116.1 116.1 88.4 107.5 REMARK 620 7 HOH A 680 O 94.1 70.3 70.3 131.5 125.9 101.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 8 OE1 REMARK 620 2 GLN A 8 OE1 49.7 REMARK 620 3 LYS A 77 O 26.2 59.7 REMARK 620 4 GLU A 80 OE1 28.2 60.3 2.1 REMARK 620 5 GLU A 80 OE2 30.5 62.5 4.4 2.5 REMARK 620 6 HOH A 421 O 30.5 64.8 5.4 4.5 2.8 REMARK 620 7 HOH A 530 O 30.9 62.2 4.7 2.7 0.6 3.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HY5 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 DBREF 6QDS A 1 231 UNP P31947 1433S_HUMAN 1 231 DBREF 6QDS B 93 104 UNP Q9NQU5 PAK6_HUMAN 93 104 SEQADV 6QDS GLY A -4 UNP P31947 EXPRESSION TAG SEQADV 6QDS ALA A -3 UNP P31947 EXPRESSION TAG SEQADV 6QDS MET A -2 UNP P31947 EXPRESSION TAG SEQADV 6QDS GLY A -1 UNP P31947 EXPRESSION TAG SEQADV 6QDS SER A 0 UNP P31947 EXPRESSION TAG SEQADV 6QDS ACE B 93 UNP Q9NQU5 SER 93 ACETYLATION SEQRES 1 A 236 GLY ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN SEQRES 2 A 236 LYS ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP SEQRES 3 A 236 MET ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU SEQRES 4 A 236 GLU LEU SER CYS GLU GLU ARG ASN LEU LEU SER VAL ALA SEQRES 5 A 236 TYR LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG SEQRES 6 A 236 VAL LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SEQRES 7 A 236 SER GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU SEQRES 8 A 236 LYS VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL SEQRES 9 A 236 LEU GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY SEQRES 10 A 236 ASP ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY SEQRES 11 A 236 ASP TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP SEQRES 12 A 236 ASP LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR SEQRES 13 A 236 GLN GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO SEQRES 14 A 236 THR ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER SEQRES 15 A 236 VAL PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA SEQRES 16 A 236 ILE SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA SEQRES 17 A 236 ASP LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER SEQRES 18 A 236 THR LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU SEQRES 19 A 236 TRP THR SEQRES 1 B 12 ACE VAL ILE SER SER ASN TPO LEU ARG GLY ARG SER MODRES 6QDS TPO B 99 THR MODIFIED RESIDUE HET TPO B 99 16 HET HY5 A 301 104 HET CL A 302 1 HET NA A 303 1 HET NA A 304 1 HETNAM TPO PHOSPHOTHREONINE HETNAM HY5 FC-NCPC HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 2 TPO C4 H10 N O6 P FORMUL 3 HY5 C36 H57 N O10 FORMUL 4 CL CL 1- FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *362(H2 O) HELIX 1 AA1 GLU A 2 ALA A 16 1 15 HELIX 2 AA2 ARG A 18 GLU A 31 1 14 HELIX 3 AA3 SER A 37 ASN A 70 1 34 HELIX 4 AA4 PRO A 79 SER A 105 1 27 HELIX 5 AA5 HIS A 106 ALA A 111 1 6 HELIX 6 AA6 ASP A 113 ALA A 135 1 23 HELIX 7 AA7 LYS A 140 MET A 162 1 23 HELIX 8 AA8 ASN A 166 ILE A 183 1 18 HELIX 9 AA9 SER A 186 LEU A 205 1 20 HELIX 10 AB1 HIS A 206 LEU A 208 5 3 HELIX 11 AB2 SER A 209 THR A 231 1 23 LINK C ASN B 98 N TPO B 99 1555 1555 1.33 LINK C TPO B 99 N LEU B 100 1555 1555 1.33 LINK OE1 GLU A 2 NA NA A 304 1555 1555 2.84 LINK OE1AGLN A 8 NA NA A 303 1555 4555 2.93 LINK OE1BGLN A 8 NA NA A 303 1555 4555 3.06 LINK O LYS A 77 NA NA A 303 1555 1555 2.33 LINK OE1 GLU A 80 NA NA A 303 1555 1555 2.60 LINK OE2 GLU A 80 NA NA A 303 1555 1555 2.98 LINK NA NA A 303 O HOH A 421 1555 4555 2.57 LINK NA NA A 303 O HOH A 530 1555 1555 2.86 LINK NA NA A 304 O HOH A 432 1555 1555 2.34 LINK NA NA A 304 O HOH A 432 1555 3654 2.34 LINK NA NA A 304 O HOH A 462 1555 3654 2.72 LINK NA NA A 304 O HOH A 598 1555 1555 2.49 LINK NA NA A 304 O HOH A 636 1555 6554 2.83 LINK NA NA A 304 O HOH A 680 1555 1555 2.22 CISPEP 1 SER A 105 HIS A 106 0 -2.02 CISPEP 2 SER A 105 HIS A 106 0 -1.44 SITE 1 AC1 19 GLU A 39 ASN A 42 LEU A 43 PHE A 119 SITE 2 AC1 19 LYS A 122 MET A 123 PRO A 167 LYS A 214 SITE 3 AC1 19 ASP A 215 LEU A 218 HOH A 417 HOH A 430 SITE 4 AC1 19 HOH A 439 HOH A 502 HOH A 531 HOH A 573 SITE 5 AC1 19 HOH A 581 HOH A 600 HOH A 621 SITE 1 AC2 3 LYS A 9 HOH A 640 HOH A 698 SITE 1 AC3 5 GLN A 8 LYS A 77 GLU A 80 HOH A 421 SITE 2 AC3 5 HOH A 530 SITE 1 AC4 6 GLU A 2 HOH A 432 HOH A 462 HOH A 598 SITE 2 AC4 6 HOH A 636 HOH A 680 CRYST1 82.420 111.770 62.620 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012133 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015969 0.00000