HEADER HYDROLASE 07-JAN-19 6QEG TITLE CRYSTAL STRUCTURE OF HUMAN METHIONINE AMINOPEPTIDASE-2 IN COMPLEX WITH TITLE 2 AN INHIBITOR 2-OXO-1-PHENYL-PYRROLIDINE-3-CARBOXYLIC ACID (2- TITLE 3 THIOPHEN-2-YL-ETHYL)-AMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METAP 2,INITIATION FACTOR 2-ASSOCIATED 67 KDA GLYCOPROTEIN, COMPND 5 P67EIF2,PEPTIDASE M; COMPND 6 EC: 3.4.11.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METAP2, MNPEP, P67EIF2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS HYDROLASE, PEPTIDASE, METAL ION BINDING, PROTEOLYSIS, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.MUSIL,T.HEINRICH,M.LEHMANN REVDAT 4 05-JUN-19 6QEG 1 JRNL REVDAT 3 15-MAY-19 6QEG 1 REMARK REVDAT 2 08-MAY-19 6QEG 1 REMARK REVDAT 1 01-MAY-19 6QEG 0 JRNL AUTH T.HEINRICH,J.SEENISAMY,B.BLUME,J.BOMKE,M.CALDERINI,U.ECKERT, JRNL AUTH 2 M.FRIESE-HAMIM,R.KOHL,M.LEHMANN,B.LEUTHNER,D.MUSIL, JRNL AUTH 3 F.ROHDICH,F.T.ZENKE JRNL TITL DISCOVERY AND STRUCTURE-BASED OPTIMIZATION OF JRNL TITL 2 NEXT-GENERATION REVERSIBLE METHIONINE AMINOPEPTIDASE-2 JRNL TITL 3 (METAP-2) INHIBITORS. JRNL REF J.MED.CHEM. V. 62 5025 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 30939017 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00041 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.1 REMARK 3 NUMBER OF REFLECTIONS : 23383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1202 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.10 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.83 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 468 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2261 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 441 REMARK 3 BIN R VALUE (WORKING SET) : 0.2182 REMARK 3 BIN FREE R VALUE : 0.3674 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.77 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.12640 REMARK 3 B22 (A**2) : 7.94940 REMARK 3 B33 (A**2) : 1.17700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.211 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.181 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.203 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.180 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2943 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3987 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1026 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 500 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2943 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 388 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3586 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.40 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.23 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 23.1063 24.6867 13.9479 REMARK 3 T TENSOR REMARK 3 T11: -0.0727 T22: -0.1286 REMARK 3 T33: -0.0511 T12: -0.0228 REMARK 3 T13: 0.0478 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.5066 L22: 2.9044 REMARK 3 L33: 1.0057 L12: -0.3892 REMARK 3 L13: -0.1116 L23: 0.8179 REMARK 3 S TENSOR REMARK 3 S11: 0.1358 S12: 0.0098 S13: 0.1001 REMARK 3 S21: -0.1844 S22: 0.0458 S23: -0.6564 REMARK 3 S31: -0.1557 S32: 0.0652 S33: -0.1816 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292100051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23388 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 40.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.5 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% METHANOL, 0.1 M CITRATE, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.20850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.20850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.63250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.92650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.63250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.92650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.20850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.63250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.92650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.20850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.63250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.92650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 107 REMARK 465 GLY A 108 REMARK 465 PRO A 109 REMARK 465 LYS A 110 REMARK 465 GLY A 475 REMARK 465 ASP A 476 REMARK 465 ASP A 477 REMARK 465 TYR A 478 REMARK 465 HIS A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 465 HIS A 482 REMARK 465 HIS A 483 REMARK 465 HIS A 484 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 211 84.40 -153.45 REMARK 500 CYS A 223 40.19 -141.12 REMARK 500 ASN A 226 -119.32 56.45 REMARK 500 ASP A 294 -7.09 74.72 REMARK 500 ALA A 352 31.09 -83.34 REMARK 500 MET A 378 -178.25 71.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD1 REMARK 620 2 ASP A 251 OD2 57.9 REMARK 620 3 ASP A 262 OD1 100.2 157.9 REMARK 620 4 GLU A 459 OE1 105.5 101.6 86.7 REMARK 620 5 K4K A 502 O12 92.6 84.1 94.6 161.4 REMARK 620 6 K4K A 502 O23 145.4 89.3 111.3 90.8 71.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 262 OD2 REMARK 620 2 HIS A 331 NE2 91.0 REMARK 620 3 GLU A 364 OE2 161.5 81.8 REMARK 620 4 GLU A 459 OE2 87.5 121.5 81.8 REMARK 620 5 K4K A 502 O9 112.4 74.9 82.3 155.0 REMARK 620 6 K4K A 502 O23 107.9 144.4 87.3 89.9 70.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K4K A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 504 DBREF 6QEG A 108 478 UNP P50579 MAP2_HUMAN 108 478 SEQADV 6QEG MET A 107 UNP P50579 INITIATING METHIONINE SEQADV 6QEG HIS A 479 UNP P50579 EXPRESSION TAG SEQADV 6QEG HIS A 480 UNP P50579 EXPRESSION TAG SEQADV 6QEG HIS A 481 UNP P50579 EXPRESSION TAG SEQADV 6QEG HIS A 482 UNP P50579 EXPRESSION TAG SEQADV 6QEG HIS A 483 UNP P50579 EXPRESSION TAG SEQADV 6QEG HIS A 484 UNP P50579 EXPRESSION TAG SEQRES 1 A 378 MET GLY PRO LYS VAL GLN THR ASP PRO PRO SER VAL PRO SEQRES 2 A 378 ILE CYS ASP LEU TYR PRO ASN GLY VAL PHE PRO LYS GLY SEQRES 3 A 378 GLN GLU CYS GLU TYR PRO PRO THR GLN ASP GLY ARG THR SEQRES 4 A 378 ALA ALA TRP ARG THR THR SER GLU GLU LYS LYS ALA LEU SEQRES 5 A 378 ASP GLN ALA SER GLU GLU ILE TRP ASN ASP PHE ARG GLU SEQRES 6 A 378 ALA ALA GLU ALA HIS ARG GLN VAL ARG LYS TYR VAL MET SEQRES 7 A 378 SER TRP ILE LYS PRO GLY MET THR MET ILE GLU ILE CYS SEQRES 8 A 378 GLU LYS LEU GLU ASP CYS SER ARG LYS LEU ILE LYS GLU SEQRES 9 A 378 ASN GLY LEU ASN ALA GLY LEU ALA PHE PRO THR GLY CYS SEQRES 10 A 378 SER LEU ASN ASN CYS ALA ALA HIS TYR THR PRO ASN ALA SEQRES 11 A 378 GLY ASP THR THR VAL LEU GLN TYR ASP ASP ILE CYS LYS SEQRES 12 A 378 ILE ASP PHE GLY THR HIS ILE SER GLY ARG ILE ILE ASP SEQRES 13 A 378 CYS ALA PHE THR VAL THR PHE ASN PRO LYS TYR ASP THR SEQRES 14 A 378 LEU LEU LYS ALA VAL LYS ASP ALA THR ASN THR GLY ILE SEQRES 15 A 378 LYS CYS ALA GLY ILE ASP VAL ARG LEU CYS ASP VAL GLY SEQRES 16 A 378 GLU ALA ILE GLN GLU VAL MET GLU SER TYR GLU VAL GLU SEQRES 17 A 378 ILE ASP GLY LYS THR TYR GLN VAL LYS PRO ILE ARG ASN SEQRES 18 A 378 LEU ASN GLY HIS SER ILE GLY GLN TYR ARG ILE HIS ALA SEQRES 19 A 378 GLY LYS THR VAL PRO ILE VAL LYS GLY GLY GLU ALA THR SEQRES 20 A 378 ARG MET GLU GLU GLY GLU VAL TYR ALA ILE GLU THR PHE SEQRES 21 A 378 GLY SER THR GLY LYS GLY VAL VAL HIS ASP ASP MET GLU SEQRES 22 A 378 CYS SER HIS TYR MET LYS ASN PHE ASP VAL GLY HIS VAL SEQRES 23 A 378 PRO ILE ARG LEU PRO ARG THR LYS HIS LEU LEU ASN VAL SEQRES 24 A 378 ILE ASN GLU ASN PHE GLY THR LEU ALA PHE CYS ARG ARG SEQRES 25 A 378 TRP LEU ASP ARG LEU GLY GLU SER LYS TYR LEU MET ALA SEQRES 26 A 378 LEU LYS ASN LEU CYS ASP LEU GLY ILE VAL ASP PRO TYR SEQRES 27 A 378 PRO PRO LEU CYS ASP ILE LYS GLY SER TYR THR ALA GLN SEQRES 28 A 378 PHE GLU HIS THR ILE LEU LEU ARG PRO THR CYS LYS GLU SEQRES 29 A 378 VAL VAL SER ARG GLY ASP ASP TYR HIS HIS HIS HIS HIS SEQRES 30 A 378 HIS HET GOL A 501 6 HET K4K A 502 23 HET MN A 503 1 HET MN A 504 1 HETNAM GOL GLYCEROL HETNAM K4K (3~{S})-3-OXIDANYL-2-OXIDANYLIDENE-1-PHENYL-~{N}-(2- HETNAM 2 K4K THIOPHEN-2-YLETHYL)PYRROLIDINE-3-CARBOXAMIDE HETNAM MN MANGANESE (II) ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 K4K C17 H18 N2 O3 S FORMUL 4 MN 2(MN 2+) FORMUL 6 HOH *179(H2 O) HELIX 1 AA1 PRO A 119 TYR A 124 1 6 HELIX 2 AA2 ALA A 147 SER A 152 1 6 HELIX 3 AA3 SER A 152 ALA A 161 1 10 HELIX 4 AA4 SER A 162 ILE A 187 1 26 HELIX 5 AA5 THR A 192 LYS A 209 1 18 HELIX 6 AA6 ASN A 211 LEU A 213 5 3 HELIX 7 AA7 ASN A 270 LYS A 272 5 3 HELIX 8 AA8 TYR A 273 ALA A 291 1 19 HELIX 9 AA9 ARG A 296 GLU A 309 1 14 HELIX 10 AB1 LEU A 396 PHE A 410 1 15 HELIX 11 AB2 ARG A 417 LEU A 423 1 7 HELIX 12 AB3 TYR A 428 LEU A 438 1 11 SHEET 1 AA1 5 GLN A 133 CYS A 135 0 SHEET 2 AA1 5 LYS A 469 VAL A 471 -1 O LYS A 469 N CYS A 135 SHEET 3 AA1 5 THR A 455 LEU A 464 -1 N LEU A 463 O GLU A 470 SHEET 4 AA1 5 VAL A 360 SER A 368 -1 N TYR A 361 O ILE A 462 SHEET 5 AA1 5 LYS A 323 PRO A 324 -1 N LYS A 323 O SER A 368 SHEET 1 AA2 6 GLN A 133 CYS A 135 0 SHEET 2 AA2 6 LYS A 469 VAL A 471 -1 O LYS A 469 N CYS A 135 SHEET 3 AA2 6 THR A 455 LEU A 464 -1 N LEU A 463 O GLU A 470 SHEET 4 AA2 6 VAL A 360 SER A 368 -1 N TYR A 361 O ILE A 462 SHEET 5 AA2 6 ASN A 329 ILE A 333 -1 N HIS A 331 O ALA A 362 SHEET 6 AA2 6 THR A 343 PRO A 345 -1 O VAL A 344 N GLY A 330 SHEET 1 AA3 3 ALA A 215 LEU A 225 0 SHEET 2 AA3 3 CYS A 248 ILE A 256 -1 O ASP A 251 N GLY A 222 SHEET 3 AA3 3 ARG A 259 VAL A 267 -1 O VAL A 267 N CYS A 248 SHEET 1 AA4 3 CYS A 228 ALA A 230 0 SHEET 2 AA4 3 LEU A 447 CYS A 448 -1 O LEU A 447 N ALA A 230 SHEET 3 AA4 3 HIS A 375 ASP A 376 -1 N HIS A 375 O CYS A 448 SHEET 1 AA5 2 GLU A 312 ILE A 315 0 SHEET 2 AA5 2 LYS A 318 GLN A 321 -1 O LYS A 318 N ILE A 315 SHEET 1 AA6 3 PHE A 415 CYS A 416 0 SHEET 2 AA6 3 HIS A 382 LYS A 385 -1 N TYR A 383 O PHE A 415 SHEET 3 AA6 3 VAL A 441 TYR A 444 -1 O TYR A 444 N HIS A 382 LINK OD1 ASP A 251 MN MN A 504 1555 1555 2.20 LINK OD2 ASP A 251 MN MN A 504 1555 1555 2.28 LINK OD1 ASP A 262 MN MN A 504 1555 1555 2.08 LINK OD2 ASP A 262 MN MN A 503 1555 1555 2.07 LINK NE2 HIS A 331 MN MN A 503 1555 1555 2.32 LINK OE2 GLU A 364 MN MN A 503 1555 1555 2.31 LINK OE1 GLU A 459 MN MN A 504 1555 1555 2.14 LINK OE2 GLU A 459 MN MN A 503 1555 1555 2.27 LINK O9 K4K A 502 MN MN A 503 1555 1555 2.77 LINK O12 K4K A 502 MN MN A 504 1555 1555 2.35 LINK O23 K4K A 502 MN MN A 504 1555 1555 2.27 LINK O23 K4K A 502 MN MN A 503 1555 1555 2.18 CISPEP 1 ASP A 114 PRO A 115 0 0.92 SITE 1 AC1 4 ARG A 180 HIS A 460 ARG A 474 HOH A 624 SITE 1 AC2 14 PHE A 219 ALA A 230 HIS A 231 ASP A 251 SITE 2 AC2 14 ASP A 262 ASN A 329 HIS A 331 ILE A 338 SITE 3 AC2 14 HIS A 339 GLU A 364 TYR A 444 GLU A 459 SITE 4 AC2 14 MN A 503 MN A 504 SITE 1 AC3 6 ASP A 262 HIS A 331 GLU A 364 GLU A 459 SITE 2 AC3 6 K4K A 502 MN A 504 SITE 1 AC4 5 ASP A 251 ASP A 262 GLU A 459 K4K A 502 SITE 2 AC4 5 MN A 503 CRYST1 89.265 99.853 100.417 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011203 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009958 0.00000