data_6QEU # _entry.id 6QEU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6QEU pdb_00006qeu 10.2210/pdb6qeu/pdb WWPDB D_1200013612 ? ? BMRB 34350 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Gga-AvBD11 (Avian beta-defensin 11 from Gallus gallus)' _pdbx_database_related.db_id 34350 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6QEU _pdbx_database_status.recvd_initial_deposition_date 2019-01-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Meudal, H.' 1 0000-0002-9642-3643 'Loth, K.' 2 0000-0001-7058-8661 'Delmas, A.F.' 3 0000-0002-8243-8887 'Landon, C.' 4 0000-0002-0248-1990 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 117 _citation.language ? _citation.page_first 337 _citation.page_last 345 _citation.title 'Structure, function, and evolution ofGga-AvBD11, the archetype of the structural avian-double-beta-defensin family.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1912941117 _citation.pdbx_database_id_PubMed 31871151 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guyot, N.' 1 ? primary 'Meudal, H.' 2 0000-0002-9642-3643 primary 'Trapp, S.' 3 0000-0002-2735-0217 primary 'Iochmann, S.' 4 ? primary 'Silvestre, A.' 5 ? primary 'Jousset, G.' 6 ? primary 'Labas, V.' 7 ? primary 'Reverdiau, P.' 8 ? primary 'Loth, K.' 9 ? primary 'Herve, V.' 10 ? primary 'Aucagne, V.' 11 ? primary 'Delmas, A.F.' 12 ? primary 'Rehault-Godbert, S.' 13 ? primary 'Landon, C.' 14 0000-0002-0248-1990 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description Gallinacin-11 _entity.formula_weight 9304.899 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Gal-11,Beta-defensin 11,Vitelline membrane outer layer protein 2,Vitelline membrane outer layer protein II,VMOII' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LPRDTSRCVGYHGYCIRSKVCPKPFAAFGTCSWRQKTCCVDTTSDFHTCQDKGGHCVSPKIRCLEEQLGLCPLKRWTCCK EI ; _entity_poly.pdbx_seq_one_letter_code_can ;LPRDTSRCVGYHGYCIRSKVCPKPFAAFGTCSWRQKTCCVDTTSDFHTCQDKGGHCVSPKIRCLEEQLGLCPLKRWTCCK EI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 PRO n 1 3 ARG n 1 4 ASP n 1 5 THR n 1 6 SER n 1 7 ARG n 1 8 CYS n 1 9 VAL n 1 10 GLY n 1 11 TYR n 1 12 HIS n 1 13 GLY n 1 14 TYR n 1 15 CYS n 1 16 ILE n 1 17 ARG n 1 18 SER n 1 19 LYS n 1 20 VAL n 1 21 CYS n 1 22 PRO n 1 23 LYS n 1 24 PRO n 1 25 PHE n 1 26 ALA n 1 27 ALA n 1 28 PHE n 1 29 GLY n 1 30 THR n 1 31 CYS n 1 32 SER n 1 33 TRP n 1 34 ARG n 1 35 GLN n 1 36 LYS n 1 37 THR n 1 38 CYS n 1 39 CYS n 1 40 VAL n 1 41 ASP n 1 42 THR n 1 43 THR n 1 44 SER n 1 45 ASP n 1 46 PHE n 1 47 HIS n 1 48 THR n 1 49 CYS n 1 50 GLN n 1 51 ASP n 1 52 LYS n 1 53 GLY n 1 54 GLY n 1 55 HIS n 1 56 CYS n 1 57 VAL n 1 58 SER n 1 59 PRO n 1 60 LYS n 1 61 ILE n 1 62 ARG n 1 63 CYS n 1 64 LEU n 1 65 GLU n 1 66 GLU n 1 67 GLN n 1 68 LEU n 1 69 GLY n 1 70 LEU n 1 71 CYS n 1 72 PRO n 1 73 LEU n 1 74 LYS n 1 75 ARG n 1 76 TRP n 1 77 THR n 1 78 CYS n 1 79 CYS n 1 80 LYS n 1 81 GLU n 1 82 ILE n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 82 _entity_src_nat.common_name Chicken _entity_src_nat.pdbx_organism_scientific 'Gallus gallus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9031 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue egg _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details 'vitelline membrane' _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLL11_CHICK _struct_ref.pdbx_db_accession Q6IV20 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LPRDTSRCVGYHGYCIRSKVCPKPFAAFGTCSWRQKTCCVDTTSDFHTCQDKGGHCVSPKIRCLEEQLGLCPLKRWTCCK EI ; _struct_ref.pdbx_align_begin 23 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6QEU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 82 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6IV20 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 104 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 82 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic 3 1 1 '2D 1H-15N HSQC' 1 isotropic 4 1 1 '2D 1H-13C HSQC' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 4.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.08 mM [1-82]Gga-AvBD11, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label unlabelled _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III HD' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details cryoprobe # _pdbx_nmr_refine.entry_id 6QEU _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 6QEU _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'total energies and restraint violation statistics' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6QEU _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 2 'structure calculation' ARIA ? ;Linge, O'Donoghue and Nilges ; 3 'chemical shift assignment' 'CcpNmr Analysis' ? CCPN 4 'peak picking' 'CcpNmr Analysis' ? CCPN # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6QEU _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6QEU _struct.title 'Gga-AvBD11 (Avian beta-defensin 11 from Gallus gallus)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6QEU _struct_keywords.text 'new fold, double beta-defensin, defensin, avian egg, ANTIMICROBIAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 4 ? HIS A 12 ? ASP A 4 HIS A 12 1 ? 9 HELX_P HELX_P2 AA2 HIS A 47 ? GLY A 53 ? HIS A 47 GLY A 53 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 38 SG ? ? A CYS 8 A CYS 38 1_555 ? ? ? ? ? ? ? 2.151 ? ? disulf2 disulf ? ? A CYS 15 SG ? ? ? 1_555 A CYS 31 SG ? ? A CYS 15 A CYS 31 1_555 ? ? ? ? ? ? ? 2.127 ? ? disulf3 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 39 SG ? ? A CYS 21 A CYS 39 1_555 ? ? ? ? ? ? ? 2.145 ? ? disulf4 disulf ? ? A CYS 49 SG ? ? ? 1_555 A CYS 78 SG ? ? A CYS 49 A CYS 78 1_555 ? ? ? ? ? ? ? 2.240 ? ? disulf5 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 71 SG ? ? A CYS 56 A CYS 71 1_555 ? ? ? ? ? ? ? 2.240 ? ? disulf6 disulf ? ? A CYS 63 SG ? ? ? 1_555 A CYS 79 SG ? ? A CYS 63 A CYS 79 1_555 ? ? ? ? ? ? ? 2.165 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 23 A . ? LYS 23 A PRO 24 A ? PRO 24 A 1 -6.73 2 LYS 23 A . ? LYS 23 A PRO 24 A ? PRO 24 A 2 -6.72 3 LYS 23 A . ? LYS 23 A PRO 24 A ? PRO 24 A 3 -8.15 4 LYS 23 A . ? LYS 23 A PRO 24 A ? PRO 24 A 4 -5.57 5 LYS 23 A . ? LYS 23 A PRO 24 A ? PRO 24 A 5 -7.87 6 LYS 23 A . ? LYS 23 A PRO 24 A ? PRO 24 A 6 -8.96 7 LYS 23 A . ? LYS 23 A PRO 24 A ? PRO 24 A 7 -9.01 8 LYS 23 A . ? LYS 23 A PRO 24 A ? PRO 24 A 8 -4.56 9 LYS 23 A . ? LYS 23 A PRO 24 A ? PRO 24 A 9 -5.56 10 LYS 23 A . ? LYS 23 A PRO 24 A ? PRO 24 A 10 -7.89 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 14 ? ILE A 16 ? TYR A 14 ILE A 16 AA1 2 THR A 37 ? ASP A 41 ? THR A 37 ASP A 41 AA1 3 PHE A 25 ? PHE A 28 ? PHE A 25 PHE A 28 AA2 1 HIS A 55 ? VAL A 57 ? HIS A 55 VAL A 57 AA2 2 THR A 77 ? CYS A 79 ? THR A 77 CYS A 79 AA2 3 GLU A 65 ? LEU A 70 ? GLU A 65 LEU A 70 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TYR A 14 ? N TYR A 14 O CYS A 39 ? O CYS A 39 AA1 2 3 O CYS A 38 ? O CYS A 38 N PHE A 28 ? N PHE A 28 AA2 1 2 N HIS A 55 ? N HIS A 55 O CYS A 79 ? O CYS A 79 AA2 2 3 O CYS A 78 ? O CYS A 78 N GLN A 67 ? N GLN A 67 # _atom_sites.entry_id 6QEU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 CYS 15 15 15 CYS CYS A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 TRP 33 33 33 TRP TRP A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 CYS 49 49 49 CYS CYS A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 CYS 63 63 63 CYS CYS A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 CYS 71 71 71 CYS CYS A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 TRP 76 76 76 TRP TRP A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 CYS 78 78 78 CYS CYS A . n A 1 79 CYS 79 79 79 CYS CYS A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 ILE 82 82 82 ILE ILE A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 5650 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-12-18 2 'Structure model' 1 1 2019-12-25 3 'Structure model' 1 2 2020-01-01 4 'Structure model' 1 3 2020-01-15 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' citation 5 4 'Structure model' citation_author 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_DOI' 2 3 'Structure model' '_citation.pdbx_database_id_PubMed' 3 3 'Structure model' '_citation.title' 4 3 'Structure model' '_citation_author.identifier_ORCID' 5 4 'Structure model' '_citation.journal_volume' 6 4 'Structure model' '_citation.page_first' 7 4 'Structure model' '_citation.page_last' 8 4 'Structure model' '_citation.year' 9 4 'Structure model' '_citation_author.identifier_ORCID' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' 12 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component '[1-82]Gga-AvBD11' _pdbx_nmr_exptl_sample.concentration 1.08 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 3 HE2 A HIS 12 ? ? OD1 A ASP 51 ? ? 1.59 2 4 HE2 A HIS 12 ? ? OD1 A ASP 51 ? ? 1.56 3 6 O A HIS 47 ? ? HE22 A GLN 50 ? ? 1.60 4 10 HE2 A HIS 12 ? ? OD1 A ASP 51 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 11 ? ? -92.59 -67.56 2 1 VAL A 20 ? ? -77.97 33.37 3 1 ALA A 27 ? ? -61.94 88.89 4 1 CYS A 31 ? ? -82.13 -71.23 5 1 ASP A 41 ? ? -65.63 89.65 6 1 THR A 43 ? ? -112.64 -74.19 7 1 SER A 44 ? ? -93.66 -74.12 8 1 PHE A 46 ? ? -68.02 1.86 9 1 HIS A 47 ? ? -52.17 3.88 10 1 THR A 48 ? ? -45.46 3.42 11 1 CYS A 49 ? ? -38.29 -39.71 12 1 PRO A 59 ? ? -56.48 -3.78 13 1 GLU A 66 ? ? 90.66 75.57 14 1 GLN A 67 ? ? -91.86 -77.06 15 1 LEU A 68 ? ? -178.85 147.09 16 1 GLU A 81 ? ? 49.48 91.06 17 2 TYR A 11 ? ? -92.89 -61.94 18 2 LYS A 19 ? ? -79.77 22.23 19 2 VAL A 20 ? ? -71.65 33.44 20 2 ALA A 27 ? ? -66.46 89.06 21 2 CYS A 31 ? ? -74.92 -73.21 22 2 THR A 43 ? ? -114.32 -72.46 23 2 PHE A 46 ? ? -46.56 -13.70 24 2 HIS A 47 ? ? -59.67 -0.68 25 2 THR A 48 ? ? -49.06 1.63 26 2 LEU A 64 ? ? -68.29 85.20 27 2 GLU A 66 ? ? 82.71 58.49 28 2 LEU A 68 ? ? -176.98 131.55 29 2 GLU A 81 ? ? 53.52 91.79 30 3 PRO A 2 ? ? -59.03 173.98 31 3 TYR A 11 ? ? -93.29 -63.47 32 3 VAL A 20 ? ? -84.27 33.93 33 3 PRO A 22 ? ? -69.29 -173.15 34 3 ALA A 27 ? ? -63.03 93.70 35 3 CYS A 31 ? ? -89.93 -70.04 36 3 ASP A 41 ? ? -68.67 90.33 37 3 THR A 43 ? ? -114.04 -71.76 38 3 HIS A 47 ? ? -56.45 -3.80 39 3 THR A 48 ? ? -49.45 -8.56 40 3 LEU A 64 ? ? -69.65 85.29 41 3 GLU A 66 ? ? 82.32 60.76 42 3 GLN A 67 ? ? -79.54 -84.34 43 3 GLU A 81 ? ? 63.35 90.92 44 4 TYR A 11 ? ? -93.42 -62.61 45 4 VAL A 20 ? ? -80.10 33.15 46 4 PRO A 22 ? ? -69.94 -174.33 47 4 ALA A 27 ? ? -61.47 94.58 48 4 CYS A 31 ? ? -91.07 -71.23 49 4 ASP A 41 ? ? -67.52 97.90 50 4 THR A 43 ? ? -111.69 -73.30 51 4 PHE A 46 ? ? -44.19 -16.57 52 4 HIS A 47 ? ? -55.85 -2.73 53 4 THR A 48 ? ? -48.28 -6.14 54 4 GLU A 66 ? ? 83.82 58.94 55 4 LEU A 68 ? ? -178.68 81.82 56 4 GLU A 81 ? ? 53.62 93.29 57 5 TYR A 11 ? ? -93.28 -65.57 58 5 VAL A 20 ? ? -77.00 33.27 59 5 ALA A 27 ? ? -64.46 95.74 60 5 CYS A 31 ? ? -74.26 -73.67 61 5 SER A 32 ? ? -112.18 -71.62 62 5 ASP A 41 ? ? -69.57 89.22 63 5 THR A 48 ? ? -48.44 -10.06 64 5 GLU A 66 ? ? -158.08 80.69 65 5 GLN A 67 ? ? -91.37 -71.06 66 5 LEU A 68 ? ? -174.30 112.58 67 5 GLU A 81 ? ? 60.02 100.01 68 6 TYR A 11 ? ? -93.55 -60.27 69 6 VAL A 20 ? ? -70.17 34.23 70 6 PRO A 22 ? ? -69.45 -174.41 71 6 ALA A 27 ? ? -62.71 96.29 72 6 CYS A 31 ? ? -86.43 -70.47 73 6 SER A 32 ? ? -98.13 -74.22 74 6 ASP A 41 ? ? -65.94 89.86 75 6 THR A 43 ? ? -113.88 -74.93 76 6 HIS A 47 ? ? -58.96 -2.58 77 6 THR A 48 ? ? -49.51 -1.39 78 6 GLU A 66 ? ? 87.55 76.41 79 6 GLN A 67 ? ? -97.42 -69.00 80 6 LEU A 68 ? ? -176.35 134.00 81 6 GLU A 81 ? ? 60.14 117.60 82 7 PRO A 2 ? ? -62.95 -156.72 83 7 TYR A 11 ? ? -92.31 -67.70 84 7 LYS A 19 ? ? -79.40 21.71 85 7 VAL A 20 ? ? -79.48 32.71 86 7 ALA A 27 ? ? -65.33 96.24 87 7 CYS A 31 ? ? -74.78 -70.92 88 7 SER A 32 ? ? -106.88 -71.43 89 7 ASP A 41 ? ? -69.95 90.35 90 7 HIS A 47 ? ? -59.52 -0.30 91 7 THR A 48 ? ? -49.30 -5.33 92 7 LEU A 64 ? ? -68.42 84.77 93 7 GLU A 66 ? ? 77.89 65.18 94 7 GLN A 67 ? ? -74.99 -83.76 95 7 GLU A 81 ? ? 46.61 93.52 96 8 TYR A 11 ? ? -92.06 -70.93 97 8 VAL A 20 ? ? -75.17 33.24 98 8 PRO A 22 ? ? -67.62 -175.50 99 8 ALA A 27 ? ? -63.43 99.75 100 8 CYS A 31 ? ? -91.37 -70.76 101 8 SER A 32 ? ? -102.35 -71.39 102 8 ASP A 41 ? ? -62.72 97.41 103 8 SER A 44 ? ? -98.45 -62.94 104 8 HIS A 47 ? ? -64.00 1.87 105 8 THR A 48 ? ? -47.29 -6.05 106 8 GLU A 66 ? ? 89.71 70.55 107 8 LEU A 68 ? ? -172.57 73.63 108 8 GLU A 81 ? ? 60.24 118.26 109 9 TYR A 11 ? ? -94.15 -68.37 110 9 VAL A 20 ? ? -71.69 33.95 111 9 ALA A 27 ? ? -62.27 92.10 112 9 CYS A 31 ? ? -79.83 -71.60 113 9 SER A 32 ? ? -107.13 -70.62 114 9 ASP A 41 ? ? -66.83 95.41 115 9 HIS A 47 ? ? -58.84 -0.19 116 9 THR A 48 ? ? -46.88 -11.45 117 9 GLU A 66 ? ? -177.17 107.37 118 9 GLN A 67 ? ? -106.11 -64.79 119 9 LEU A 68 ? ? -177.06 67.44 120 9 GLU A 81 ? ? 54.94 91.66 121 10 TYR A 11 ? ? -92.76 -70.26 122 10 VAL A 20 ? ? -74.57 33.50 123 10 PRO A 22 ? ? -69.94 -174.28 124 10 ALA A 27 ? ? -64.72 98.27 125 10 CYS A 31 ? ? -89.38 -70.25 126 10 SER A 32 ? ? -104.12 -72.09 127 10 PHE A 46 ? ? -55.93 -8.81 128 10 HIS A 47 ? ? -61.83 1.16 129 10 THR A 48 ? ? -46.90 -7.27 130 10 GLU A 66 ? ? 84.78 74.39 131 10 GLN A 67 ? ? -96.99 -60.58 132 10 LEU A 68 ? ? -175.41 106.64 133 10 GLU A 81 ? ? 48.93 93.02 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #