HEADER ANTIMICROBIAL PROTEIN 08-JAN-19 6QEU TITLE GGA-AVBD11 (AVIAN BETA-DEFENSIN 11 FROM GALLUS GALLUS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALLINACIN-11; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAL-11,BETA-DEFENSIN 11,VITELLINE MEMBRANE OUTER LAYER COMPND 5 PROTEIN 2,VITELLINE MEMBRANE OUTER LAYER PROTEIN II,VMOII SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 TISSUE: EGG KEYWDS NEW FOLD, DOUBLE BETA-DEFENSIN, DEFENSIN, AVIAN EGG, ANTIMICROBIAL KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR H.MEUDAL,K.LOTH,A.F.DELMAS,C.LANDON REVDAT 5 14-JUN-23 6QEU 1 REMARK REVDAT 4 15-JAN-20 6QEU 1 JRNL REVDAT 3 01-JAN-20 6QEU 1 JRNL REVDAT 2 25-DEC-19 6QEU 1 JRNL REVDAT 1 18-DEC-19 6QEU 0 JRNL AUTH N.GUYOT,H.MEUDAL,S.TRAPP,S.IOCHMANN,A.SILVESTRE,G.JOUSSET, JRNL AUTH 2 V.LABAS,P.REVERDIAU,K.LOTH,V.HERVE,V.AUCAGNE,A.F.DELMAS, JRNL AUTH 3 S.REHAULT-GODBERT,C.LANDON JRNL TITL STRUCTURE, FUNCTION, AND EVOLUTION OFGGA-AVBD11, THE JRNL TITL 2 ARCHETYPE OF THE STRUCTURAL AVIAN-DOUBLE-BETA-DEFENSIN JRNL TITL 3 FAMILY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 337 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 31871151 JRNL DOI 10.1073/PNAS.1912941117 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QEU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1200013612. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.08 MM [1-82]GGA-AVBD11, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA, CCPNMR ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TOTAL ENERGIES AND RESTRAINT REMARK 210 VIOLATION STATISTICS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 11 -67.56 -92.59 REMARK 500 1 VAL A 20 33.37 -77.97 REMARK 500 1 ALA A 27 88.89 -61.94 REMARK 500 1 CYS A 31 -71.23 -82.13 REMARK 500 1 ASP A 41 89.65 -65.63 REMARK 500 1 THR A 43 -74.19 -112.64 REMARK 500 1 SER A 44 -74.12 -93.66 REMARK 500 1 PHE A 46 1.86 -68.02 REMARK 500 1 HIS A 47 3.88 -52.17 REMARK 500 1 THR A 48 3.42 -45.46 REMARK 500 1 CYS A 49 -39.71 -38.29 REMARK 500 1 PRO A 59 -3.78 -56.48 REMARK 500 1 GLU A 66 75.57 90.66 REMARK 500 1 GLN A 67 -77.06 -91.86 REMARK 500 1 LEU A 68 147.09 -178.85 REMARK 500 1 GLU A 81 91.06 49.48 REMARK 500 2 TYR A 11 -61.94 -92.89 REMARK 500 2 LYS A 19 22.23 -79.77 REMARK 500 2 VAL A 20 33.44 -71.65 REMARK 500 2 ALA A 27 89.06 -66.46 REMARK 500 2 CYS A 31 -73.21 -74.92 REMARK 500 2 THR A 43 -72.46 -114.32 REMARK 500 2 PHE A 46 -13.70 -46.56 REMARK 500 2 HIS A 47 -0.68 -59.67 REMARK 500 2 THR A 48 1.63 -49.06 REMARK 500 2 LEU A 64 85.20 -68.29 REMARK 500 2 GLU A 66 58.49 82.71 REMARK 500 2 LEU A 68 131.55 -176.98 REMARK 500 2 GLU A 81 91.79 53.52 REMARK 500 3 PRO A 2 173.98 -59.03 REMARK 500 3 TYR A 11 -63.47 -93.29 REMARK 500 3 VAL A 20 33.93 -84.27 REMARK 500 3 PRO A 22 -173.15 -69.29 REMARK 500 3 ALA A 27 93.70 -63.03 REMARK 500 3 CYS A 31 -70.04 -89.93 REMARK 500 3 ASP A 41 90.33 -68.67 REMARK 500 3 THR A 43 -71.76 -114.04 REMARK 500 3 HIS A 47 -3.80 -56.45 REMARK 500 3 THR A 48 -8.56 -49.45 REMARK 500 3 LEU A 64 85.29 -69.65 REMARK 500 3 GLU A 66 60.76 82.32 REMARK 500 3 GLN A 67 -84.34 -79.54 REMARK 500 3 GLU A 81 90.92 63.35 REMARK 500 4 TYR A 11 -62.61 -93.42 REMARK 500 4 VAL A 20 33.15 -80.10 REMARK 500 4 PRO A 22 -174.33 -69.94 REMARK 500 4 ALA A 27 94.58 -61.47 REMARK 500 4 CYS A 31 -71.23 -91.07 REMARK 500 4 ASP A 41 97.90 -67.52 REMARK 500 4 THR A 43 -73.30 -111.69 REMARK 500 REMARK 500 THIS ENTRY HAS 133 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34350 RELATED DB: BMRB REMARK 900 GGA-AVBD11 (AVIAN BETA-DEFENSIN 11 FROM GALLUS GALLUS) DBREF 6QEU A 1 82 UNP Q6IV20 GLL11_CHICK 23 104 SEQRES 1 A 82 LEU PRO ARG ASP THR SER ARG CYS VAL GLY TYR HIS GLY SEQRES 2 A 82 TYR CYS ILE ARG SER LYS VAL CYS PRO LYS PRO PHE ALA SEQRES 3 A 82 ALA PHE GLY THR CYS SER TRP ARG GLN LYS THR CYS CYS SEQRES 4 A 82 VAL ASP THR THR SER ASP PHE HIS THR CYS GLN ASP LYS SEQRES 5 A 82 GLY GLY HIS CYS VAL SER PRO LYS ILE ARG CYS LEU GLU SEQRES 6 A 82 GLU GLN LEU GLY LEU CYS PRO LEU LYS ARG TRP THR CYS SEQRES 7 A 82 CYS LYS GLU ILE HELIX 1 AA1 ASP A 4 HIS A 12 1 9 HELIX 2 AA2 HIS A 47 GLY A 53 5 7 SHEET 1 AA1 3 TYR A 14 ILE A 16 0 SHEET 2 AA1 3 THR A 37 ASP A 41 -1 O CYS A 39 N TYR A 14 SHEET 3 AA1 3 PHE A 25 PHE A 28 -1 N PHE A 28 O CYS A 38 SHEET 1 AA2 3 HIS A 55 VAL A 57 0 SHEET 2 AA2 3 THR A 77 CYS A 79 -1 O CYS A 79 N HIS A 55 SHEET 3 AA2 3 GLU A 65 LEU A 70 -1 N GLN A 67 O CYS A 78 SSBOND 1 CYS A 8 CYS A 38 1555 1555 2.15 SSBOND 2 CYS A 15 CYS A 31 1555 1555 2.13 SSBOND 3 CYS A 21 CYS A 39 1555 1555 2.15 SSBOND 4 CYS A 49 CYS A 78 1555 1555 2.24 SSBOND 5 CYS A 56 CYS A 71 1555 1555 2.24 SSBOND 6 CYS A 63 CYS A 79 1555 1555 2.17 CISPEP 1 LYS A 23 PRO A 24 1 -6.73 CISPEP 2 LYS A 23 PRO A 24 2 -6.72 CISPEP 3 LYS A 23 PRO A 24 3 -8.15 CISPEP 4 LYS A 23 PRO A 24 4 -5.57 CISPEP 5 LYS A 23 PRO A 24 5 -7.87 CISPEP 6 LYS A 23 PRO A 24 6 -8.96 CISPEP 7 LYS A 23 PRO A 24 7 -9.01 CISPEP 8 LYS A 23 PRO A 24 8 -4.56 CISPEP 9 LYS A 23 PRO A 24 9 -5.56 CISPEP 10 LYS A 23 PRO A 24 10 -7.89 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1