HEADER HYDROLASE 09-JAN-19 6QF1 TITLE X-RAY STRUCTURE OF PROTEINASE K CRYSTALLIZED ON A SILICON CHIP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEINASE K; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDOPEPTIDASE K,TRITIRACHIUM ALKALINE PROTEINASE; COMPND 5 EC: 3.4.21.64 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARENGYODONTIUM ALBUM; SOURCE 3 ORGANISM_COMMON: TRITIRACHIUM ALBUM; SOURCE 4 ORGANISM_TAXID: 37998 KEYWDS PROTEINASE K, ON-CHIP CRYSTALLIZATION, IN-SITU CRYSTALLIZATION, ROOM- KEYWDS 2 TEMPERATURE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LIESKE,M.CERV,S.KREIDA,M.BARTHELMESS,P.FISCHER,T.PAKENDORF, AUTHOR 2 O.YEFANOV,V.MARIANI,T.SEINE,B.H.ROSS,E.CROSAS,O.LORBEER,A.BURKHARDT, AUTHOR 3 T.J.LANE,S.GUENTHER,J.BERGTHOLDT,S.SCHOEN,S.TORNROTH-HORSEFIELD, AUTHOR 4 H.N.CHAPMAN,A.MEENTS REVDAT 5 23-OCT-24 6QF1 1 REMARK REVDAT 4 24-JAN-24 6QF1 1 REMARK REVDAT 3 30-MAR-22 6QF1 1 LINK REVDAT 2 31-JUL-19 6QF1 1 JRNL REVDAT 1 10-JUL-19 6QF1 0 JRNL AUTH J.LIESKE,M.CERV,S.KREIDA,D.KOMADINA,J.FISCHER,M.BARTHELMESS, JRNL AUTH 2 P.FISCHER,T.PAKENDORF,O.YEFANOV,V.MARIANI,T.SEINE,B.H.ROSS, JRNL AUTH 3 E.CROSAS,O.LORBEER,A.BURKHARDT,T.J.LANE,S.GUENTHER, JRNL AUTH 4 J.BERGTHOLDT,S.SCHOEN,S.TORNROTH-HORSEFIELD,H.N.CHAPMAN, JRNL AUTH 5 A.MEENTS JRNL TITL ON-CHIP CRYSTALLIZATION FOR SERIAL CRYSTALLOGRAPHY JRNL TITL 2 EXPERIMENTS AND ON-CHIP LIGAND-BINDING STUDIES. JRNL REF IUCRJ V. 6 714 2019 JRNL REFN ESSN 2052-2525 JRNL PMID 31316815 JRNL DOI 10.1107/S2052252519007395 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1-2155_9999 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 27060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.370 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2107 - 4.1842 0.96 1907 153 0.1310 0.1522 REMARK 3 2 4.1842 - 3.3215 0.98 1820 144 0.1107 0.1155 REMARK 3 3 3.3215 - 2.9017 0.98 1808 142 0.1239 0.1514 REMARK 3 4 2.9017 - 2.6365 0.99 1780 143 0.1313 0.1501 REMARK 3 5 2.6365 - 2.4475 0.99 1801 144 0.1330 0.1424 REMARK 3 6 2.4475 - 2.3032 1.00 1785 141 0.1304 0.1675 REMARK 3 7 2.3032 - 2.1879 0.99 1782 142 0.1297 0.1740 REMARK 3 8 2.1879 - 2.0926 1.00 1792 143 0.1360 0.1530 REMARK 3 9 2.0926 - 2.0121 0.99 1761 139 0.1429 0.1710 REMARK 3 10 2.0121 - 1.9427 1.00 1769 141 0.1368 0.1611 REMARK 3 11 1.9427 - 1.8819 1.00 1780 143 0.1551 0.1653 REMARK 3 12 1.8819 - 1.8281 1.00 1772 140 0.1610 0.2173 REMARK 3 13 1.8281 - 1.7800 1.00 1743 140 0.1782 0.2005 REMARK 3 14 1.7800 - 1.7366 1.00 1765 140 0.1845 0.2135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2272 REMARK 3 ANGLE : 0.746 3135 REMARK 3 CHIRALITY : 0.049 346 REMARK 3 PLANARITY : 0.005 417 REMARK 3 DIHEDRAL : 10.563 1413 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.5250 50.3377 102.7737 REMARK 3 T TENSOR REMARK 3 T11: 0.0818 T22: 0.1804 REMARK 3 T33: 0.1109 T12: -0.0004 REMARK 3 T13: -0.0035 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 1.1681 L22: 1.5170 REMARK 3 L33: 1.0473 L12: -0.2397 REMARK 3 L13: -0.0398 L23: -0.2801 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: 0.2126 S13: 0.0103 REMARK 3 S21: -0.0768 S22: -0.0228 S23: 0.1841 REMARK 3 S31: 0.0170 S32: -0.1528 S33: -0.0071 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.5722 40.2863 116.2561 REMARK 3 T TENSOR REMARK 3 T11: 0.1190 T22: 0.1247 REMARK 3 T33: 0.1465 T12: -0.0328 REMARK 3 T13: 0.0240 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.4253 L22: 6.7948 REMARK 3 L33: 3.3558 L12: -3.5204 REMARK 3 L13: 2.3002 L23: -3.8305 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: -0.1624 S13: -0.2892 REMARK 3 S21: 0.2971 S22: 0.1576 S23: 0.3568 REMARK 3 S31: 0.1350 S32: -0.1288 S33: -0.1771 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.4417 43.3794 110.7278 REMARK 3 T TENSOR REMARK 3 T11: 0.0569 T22: 0.0899 REMARK 3 T33: 0.1097 T12: -0.0493 REMARK 3 T13: 0.0130 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 2.8479 L22: 3.4965 REMARK 3 L33: 2.2947 L12: -1.6912 REMARK 3 L13: 0.2567 L23: -1.3983 REMARK 3 S TENSOR REMARK 3 S11: -0.0659 S12: -0.0542 S13: -0.0883 REMARK 3 S21: 0.1075 S22: 0.0265 S23: 0.0841 REMARK 3 S31: 0.0671 S32: -0.1143 S33: 0.0355 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.8407 36.1801 111.0954 REMARK 3 T TENSOR REMARK 3 T11: 0.0831 T22: 0.0578 REMARK 3 T33: 0.1249 T12: 0.0076 REMARK 3 T13: 0.0098 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 6.6204 L22: 3.3403 REMARK 3 L33: 9.1871 L12: -0.2443 REMARK 3 L13: 2.3579 L23: 1.6367 REMARK 3 S TENSOR REMARK 3 S11: 0.0673 S12: 0.1075 S13: 0.0439 REMARK 3 S21: 0.0471 S22: -0.0465 S23: 0.0575 REMARK 3 S31: 0.0931 S32: -0.0014 S33: -0.0722 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 99.3550 48.5201 111.8398 REMARK 3 T TENSOR REMARK 3 T11: 0.0793 T22: 0.1003 REMARK 3 T33: 0.1011 T12: -0.0032 REMARK 3 T13: -0.0039 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.1852 L22: 1.6233 REMARK 3 L33: 1.6373 L12: -0.5357 REMARK 3 L13: -0.2948 L23: 0.5200 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: -0.0179 S13: 0.0769 REMARK 3 S21: 0.0791 S22: 0.0096 S23: -0.1298 REMARK 3 S31: 0.0969 S32: 0.0526 S33: -0.0344 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.8377 56.7460 111.4748 REMARK 3 T TENSOR REMARK 3 T11: 0.0845 T22: 0.0994 REMARK 3 T33: 0.1106 T12: 0.0114 REMARK 3 T13: 0.0017 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.2674 L22: 1.0875 REMARK 3 L33: 0.8845 L12: 0.1095 REMARK 3 L13: -0.0463 L23: 0.3309 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.0023 S13: 0.1362 REMARK 3 S21: 0.0714 S22: -0.0359 S23: 0.0344 REMARK 3 S31: -0.0523 S32: -0.0482 S33: 0.0054 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.4558 62.0822 101.0504 REMARK 3 T TENSOR REMARK 3 T11: 0.0951 T22: 0.1400 REMARK 3 T33: 0.1582 T12: -0.0030 REMARK 3 T13: 0.0165 T23: 0.0599 REMARK 3 L TENSOR REMARK 3 L11: 1.4828 L22: 3.3943 REMARK 3 L33: 2.8440 L12: 0.2951 REMARK 3 L13: -0.3262 L23: 1.7233 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: 0.2306 S13: 0.3138 REMARK 3 S21: -0.1504 S22: 0.0297 S23: -0.1024 REMARK 3 S31: -0.1674 S32: -0.0367 S33: -0.0443 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QF1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27136 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.737 REMARK 200 RESOLUTION RANGE LOW (A) : 44.196 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.64600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4B5L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CHC BUFFER PH 6.5, 0.6M AMMONIUM REMARK 280 SULPHATE, 10MM CALCIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.13600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.23350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.23350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.20400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.23350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.23350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.06800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.23350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.23350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 81.20400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.23350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.23350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.06800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.13600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 465 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 433 O HOH A 527 2.01 REMARK 500 OD2 ASP A 254 O HOH A 401 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 -145.97 -168.32 REMARK 500 ASP A 207 61.37 61.42 REMARK 500 ASP A 207 61.19 61.63 REMARK 500 SER A 216 -168.17 -113.05 REMARK 500 SER A 216 -168.15 -113.03 REMARK 500 ASN A 270 78.81 -110.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 175 O REMARK 620 2 VAL A 177 O 86.7 REMARK 620 3 ASP A 200 OD1 150.5 117.6 REMARK 620 4 ASP A 200 OD2 157.6 80.2 50.9 REMARK 620 5 HOH A 451 O 80.8 72.9 120.6 78.1 REMARK 620 6 HOH A 473 O 94.0 144.9 75.9 86.6 72.5 REMARK 620 7 HOH A 505 O 91.0 73.1 81.4 102.3 145.4 141.9 REMARK 620 8 HOH A 548 O 75.3 141.4 75.2 125.6 134.7 71.4 73.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE A 302 DBREF 6QF1 A 1 279 UNP P06873 PRTK_PARAQ 106 384 SEQADV 6QF1 ASP A 207 UNP P06873 SER 312 CONFLICT SEQRES 1 A 279 ALA ALA GLN THR ASN ALA PRO TRP GLY LEU ALA ARG ILE SEQRES 2 A 279 SER SER THR SER PRO GLY THR SER THR TYR TYR TYR ASP SEQRES 3 A 279 GLU SER ALA GLY GLN GLY SER CYS VAL TYR VAL ILE ASP SEQRES 4 A 279 THR GLY ILE GLU ALA SER HIS PRO GLU PHE GLU GLY ARG SEQRES 5 A 279 ALA GLN MET VAL LYS THR TYR TYR TYR SER SER ARG ASP SEQRES 6 A 279 GLY ASN GLY HIS GLY THR HIS CYS ALA GLY THR VAL GLY SEQRES 7 A 279 SER ARG THR TYR GLY VAL ALA LYS LYS THR GLN LEU PHE SEQRES 8 A 279 GLY VAL LYS VAL LEU ASP ASP ASN GLY SER GLY GLN TYR SEQRES 9 A 279 SER THR ILE ILE ALA GLY MET ASP PHE VAL ALA SER ASP SEQRES 10 A 279 LYS ASN ASN ARG ASN CYS PRO LYS GLY VAL VAL ALA SER SEQRES 11 A 279 LEU SER LEU GLY GLY GLY TYR SER SER SER VAL ASN SER SEQRES 12 A 279 ALA ALA ALA ARG LEU GLN SER SER GLY VAL MET VAL ALA SEQRES 13 A 279 VAL ALA ALA GLY ASN ASN ASN ALA ASP ALA ARG ASN TYR SEQRES 14 A 279 SER PRO ALA SER GLU PRO SER VAL CYS THR VAL GLY ALA SEQRES 15 A 279 SER ASP ARG TYR ASP ARG ARG SER SER PHE SER ASN TYR SEQRES 16 A 279 GLY SER VAL LEU ASP ILE PHE GLY PRO GLY THR ASP ILE SEQRES 17 A 279 LEU SER THR TRP ILE GLY GLY SER THR ARG SER ILE SER SEQRES 18 A 279 GLY THR SER MET ALA THR PRO HIS VAL ALA GLY LEU ALA SEQRES 19 A 279 ALA TYR LEU MET THR LEU GLY LYS THR THR ALA ALA SER SEQRES 20 A 279 ALA CYS ARG TYR ILE ALA ASP THR ALA ASN LYS GLY ASP SEQRES 21 A 279 LEU SER ASN ILE PRO PHE GLY THR VAL ASN LEU LEU ALA SEQRES 22 A 279 TYR ASN ASN TYR GLN ALA HET CA A 301 1 HET NHE A 302 29 HETNAM CA CALCIUM ION HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 2 CA CA 2+ FORMUL 3 NHE C8 H17 N O3 S FORMUL 4 HOH *189(H2 O) HELIX 1 AA1 PRO A 7 SER A 14 1 8 HELIX 2 AA2 HIS A 46 GLU A 50 5 5 HELIX 3 AA3 GLY A 68 SER A 79 1 12 HELIX 4 AA4 GLN A 103 LYS A 118 1 16 HELIX 5 AA5 ASN A 119 ARG A 121 5 3 HELIX 6 AA6 SER A 138 SER A 151 1 14 HELIX 7 AA7 ASP A 165 ARG A 167 5 3 HELIX 8 AA8 GLY A 222 LEU A 240 1 19 HELIX 9 AA9 SER A 247 THR A 255 1 9 SHEET 1 AA1 2 ALA A 2 GLN A 3 0 SHEET 2 AA1 2 TYR A 23 TYR A 24 -1 O TYR A 23 N GLN A 3 SHEET 1 AA2 7 ALA A 53 THR A 58 0 SHEET 2 AA2 7 GLN A 89 LYS A 94 1 O LYS A 94 N LYS A 57 SHEET 3 AA2 7 SER A 33 ASP A 39 1 N VAL A 37 O PHE A 91 SHEET 4 AA2 7 GLY A 126 LEU A 131 1 O VAL A 128 N TYR A 36 SHEET 5 AA2 7 MET A 154 ALA A 158 1 O MET A 154 N ALA A 129 SHEET 6 AA2 7 CYS A 178 SER A 183 1 O CYS A 178 N VAL A 157 SHEET 7 AA2 7 ILE A 201 PRO A 204 1 O ILE A 201 N GLY A 181 SHEET 1 AA3 2 GLY A 135 GLY A 136 0 SHEET 2 AA3 2 TYR A 169 SER A 170 -1 O SER A 170 N GLY A 135 SHEET 1 AA4 2 ILE A 208 TRP A 212 0 SHEET 2 AA4 2 SER A 216 ILE A 220 -1 O ILE A 220 N ILE A 208 SHEET 1 AA5 2 ASN A 257 LYS A 258 0 SHEET 2 AA5 2 LEU A 271 LEU A 272 -1 O LEU A 272 N ASN A 257 SSBOND 1 CYS A 34 CYS A 123 1555 1555 2.03 SSBOND 2 CYS A 178 CYS A 249 1555 1555 2.04 LINK O PRO A 175 CA CA A 301 1555 1555 2.40 LINK O VAL A 177 CA CA A 301 1555 1555 2.41 LINK OD1 ASP A 200 CA CA A 301 1555 1555 2.69 LINK OD2 ASP A 200 CA CA A 301 1555 1555 2.42 LINK CA CA A 301 O HOH A 451 1555 1555 2.52 LINK CA CA A 301 O HOH A 473 1555 1555 2.50 LINK CA CA A 301 O HOH A 505 1555 1555 2.43 LINK CA CA A 301 O HOH A 548 1555 1555 2.57 CISPEP 1 SER A 170 PRO A 171 0 2.18 SITE 1 AC1 7 PRO A 175 VAL A 177 ASP A 200 HOH A 451 SITE 2 AC1 7 HOH A 473 HOH A 505 HOH A 548 SITE 1 AC2 7 ASN A 5 PRO A 7 TRP A 8 ARG A 185 SITE 2 AC2 7 HOH A 434 HOH A 466 HOH A 494 CRYST1 68.467 68.467 108.272 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014606 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009236 0.00000