HEADER HYDROLASE 12-JAN-19 6QGQ TITLE CRYSTAL STRUCTURE OF APT1 C2S MUTANT BOUND TO PALMITIC ACID. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-PROTEIN THIOESTERASE 1; COMPND 3 CHAIN: A, C, D; COMPND 4 SYNONYM: HAPT1,LYSOPHOSPHOLIPASE 1,LYSOPHOSPHOLIPASE I,LYSOPLA I; COMPND 5 EC: 3.1.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ACYL-PROTEIN THIOESTERASE 1; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: HAPT1,LYSOPHOSPHOLIPASE 1,LYSOPHOSPHOLIPASE I,LYSOPLA I; COMPND 12 EC: 3.1.2.-; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LYPLA1, APT1, LPL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: LYPLA1, APT1, LPL1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACYL-PROTEIN THIOESTERASE, PALMITIC ACID, DEPALMITOYLATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.AUDAGNOTTO,M.J.MARCAIDA,S.HO,F.POJER,G.VAN DER GOOT,M.DAL PERARO REVDAT 4 24-JAN-24 6QGQ 1 REMARK REVDAT 3 31-MAR-21 6QGQ 1 JRNL REVDAT 2 17-MAR-21 6QGQ 1 JRNL REVDAT 1 05-FEB-20 6QGQ 0 JRNL AUTH L.ABRAMI,M.AUDAGNOTTO,S.HO,M.J.MARCAIDA,F.S.MESQUITA, JRNL AUTH 2 M.U.ANWAR,P.A.SANDOZ,G.FONTI,F.POJER,M.DAL PERARO, JRNL AUTH 3 F.G.VAN DER GOOT JRNL TITL PALMITOYLATED ACYL PROTEIN THIOESTERASE APT2 DEFORMS JRNL TITL 2 MEMBRANES TO EXTRACT SUBSTRATE ACYL CHAINS. JRNL REF NAT.CHEM.BIOL. 2021 JRNL REFN ESSN 1552-4469 JRNL PMID 33707782 JRNL DOI 10.1038/S41589-021-00753-2 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6263 - 5.7822 1.00 2836 133 0.1884 0.2263 REMARK 3 2 5.7822 - 4.5908 1.00 2683 146 0.1719 0.2338 REMARK 3 3 4.5908 - 4.0109 1.00 2673 129 0.1551 0.1810 REMARK 3 4 4.0109 - 3.6443 1.00 2653 121 0.1762 0.2184 REMARK 3 5 3.6443 - 3.3832 1.00 2565 163 0.1853 0.2267 REMARK 3 6 3.3832 - 3.1838 1.00 2651 118 0.2057 0.2429 REMARK 3 7 3.1838 - 3.0244 1.00 2608 128 0.2205 0.2824 REMARK 3 8 3.0244 - 2.8927 1.00 2534 148 0.2313 0.2894 REMARK 3 9 2.8927 - 2.7814 1.00 2614 149 0.2295 0.2994 REMARK 3 10 2.7814 - 2.6854 1.00 2572 117 0.2303 0.3104 REMARK 3 11 2.6854 - 2.6015 0.99 2591 129 0.2258 0.2432 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6883 REMARK 3 ANGLE : 0.541 9343 REMARK 3 CHIRALITY : 0.042 1065 REMARK 3 PLANARITY : 0.004 1205 REMARK 3 DIHEDRAL : 6.818 4162 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30525 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FJ2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% OF OF POLYETHYLENE GLYCOL (PEG) REMARK 280 2000 MME, 0.3 M SODIUM ACETATE, 0.1 M SODIUM CACODYLATE PH 6.5;, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 73.06900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 80.36900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.06900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 80.36900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ARG A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 MET A 6 REMARK 465 SER A 7 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 ARG B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 ASN B 4 REMARK 465 ASN B 5 REMARK 465 MET B 6 REMARK 465 SER B 7 REMARK 465 THR B 8 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 ARG C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLY C 3 REMARK 465 ASN C 4 REMARK 465 ASN C 5 REMARK 465 MET C 6 REMARK 465 SER C 7 REMARK 465 THR C 8 REMARK 465 ASP C 230 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 ARG D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 GLY D 3 REMARK 465 ASN D 4 REMARK 465 ASN D 5 REMARK 465 MET D 6 REMARK 465 SER D 7 REMARK 465 THR D 8 REMARK 465 ASP D 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 174 O HOH C 701 1.87 REMARK 500 OG SER D 143 O HOH D 401 1.93 REMARK 500 O CYS A 169 O HOH A 401 1.94 REMARK 500 O ASP B 74 O HOH B 501 2.01 REMARK 500 NE2 GLN B 102 O HOH B 502 2.01 REMARK 500 NZ LYS B 50 O HOH B 503 2.03 REMARK 500 CA GLY B 159 O HOH B 510 2.04 REMARK 500 O2 GOL D 301 O HOH D 402 2.05 REMARK 500 O HOH C 733 O HOH C 737 2.09 REMARK 500 ND2 ASN A 106 O HOH A 402 2.10 REMARK 500 OD1 ASN D 161 O HOH D 403 2.12 REMARK 500 O HOH B 531 O HOH B 532 2.13 REMARK 500 O LEU C 148 OG SER C 151 2.15 REMARK 500 OE2 GLU C 84 O HOH C 702 2.15 REMARK 500 OE1 GLU B 103 O HOH B 502 2.18 REMARK 500 O THR B 33 O HOH B 504 2.18 REMARK 500 O PRO D 228 O HOH D 404 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 406 O HOH C 703 4456 1.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 -75.47 -127.93 REMARK 500 ILE A 44 27.50 -144.14 REMARK 500 ASN A 64 58.30 -117.84 REMARK 500 SER A 119 -126.98 56.03 REMARK 500 ASN A 161 30.22 -99.95 REMARK 500 MET A 207 -151.50 -103.13 REMARK 500 ARG B 18 -109.08 -119.67 REMARK 500 SER B 119 -125.53 54.65 REMARK 500 CYS B 144 -161.35 -129.99 REMARK 500 SER B 151 -5.54 -57.37 REMARK 500 LYS B 190 1.35 -67.36 REMARK 500 MET B 207 -137.86 -93.68 REMARK 500 SER B 209 -147.56 -166.40 REMARK 500 ASP B 230 -5.64 -141.74 REMARK 500 ARG C 18 -99.10 -104.47 REMARK 500 ASN C 64 62.42 -114.85 REMARK 500 ASN C 111 0.86 -69.12 REMARK 500 SER C 119 -128.28 52.55 REMARK 500 ARG C 162 -57.55 -26.11 REMARK 500 PRO C 178 152.02 -48.95 REMARK 500 MET C 207 -149.99 -101.44 REMARK 500 ARG D 18 -156.44 -86.47 REMARK 500 LYS D 105 4.19 -68.65 REMARK 500 SER D 119 -123.21 55.91 REMARK 500 CYS D 144 -159.68 -129.28 REMARK 500 ASN D 194 109.14 -54.89 REMARK 500 MET D 207 -142.69 -92.91 REMARK 500 SER D 209 -155.40 -158.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PLM D 302 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6QGO RELATED DB: PDB REMARK 900 RELATED ID: 6QGN RELATED DB: PDB DBREF 6QGQ A 1 230 UNP O75608 LYPA1_HUMAN 1 230 DBREF 6QGQ B 1 230 UNP O75608 LYPA1_HUMAN 1 230 DBREF 6QGQ C 1 230 UNP O75608 LYPA1_HUMAN 1 230 DBREF 6QGQ D 1 230 UNP O75608 LYPA1_HUMAN 1 230 SEQADV 6QGQ GLY A -2 UNP O75608 EXPRESSION TAG SEQADV 6QGQ SER A -1 UNP O75608 EXPRESSION TAG SEQADV 6QGQ ARG A 0 UNP O75608 EXPRESSION TAG SEQADV 6QGQ SER A 2 UNP O75608 CYS 2 ENGINEERED MUTATION SEQADV 6QGQ GLY B -2 UNP O75608 EXPRESSION TAG SEQADV 6QGQ SER B -1 UNP O75608 EXPRESSION TAG SEQADV 6QGQ ARG B 0 UNP O75608 EXPRESSION TAG SEQADV 6QGQ SER B 2 UNP O75608 CYS 2 ENGINEERED MUTATION SEQADV 6QGQ ALA B 231 UNP O75608 EXPRESSION TAG SEQADV 6QGQ GLY C -2 UNP O75608 EXPRESSION TAG SEQADV 6QGQ SER C -1 UNP O75608 EXPRESSION TAG SEQADV 6QGQ ARG C 0 UNP O75608 EXPRESSION TAG SEQADV 6QGQ SER C 2 UNP O75608 CYS 2 ENGINEERED MUTATION SEQADV 6QGQ GLY D -2 UNP O75608 EXPRESSION TAG SEQADV 6QGQ SER D -1 UNP O75608 EXPRESSION TAG SEQADV 6QGQ ARG D 0 UNP O75608 EXPRESSION TAG SEQADV 6QGQ SER D 2 UNP O75608 CYS 2 ENGINEERED MUTATION SEQRES 1 A 233 GLY SER ARG MET SER GLY ASN ASN MET SER THR PRO LEU SEQRES 2 A 233 PRO ALA ILE VAL PRO ALA ALA ARG LYS ALA THR ALA ALA SEQRES 3 A 233 VAL ILE PHE LEU HIS GLY LEU GLY ASP THR GLY HIS GLY SEQRES 4 A 233 TRP ALA GLU ALA PHE ALA GLY ILE ARG SER SER HIS ILE SEQRES 5 A 233 LYS TYR ILE CYS PRO HIS ALA PRO VAL ARG PRO VAL THR SEQRES 6 A 233 LEU ASN MET ASN VAL ALA MET PRO SER TRP PHE ASP ILE SEQRES 7 A 233 ILE GLY LEU SER PRO ASP SER GLN GLU ASP GLU SER GLY SEQRES 8 A 233 ILE LYS GLN ALA ALA GLU ASN ILE LYS ALA LEU ILE ASP SEQRES 9 A 233 GLN GLU VAL LYS ASN GLY ILE PRO SER ASN ARG ILE ILE SEQRES 10 A 233 LEU GLY GLY PHE SER GLN GLY GLY ALA LEU SER LEU TYR SEQRES 11 A 233 THR ALA LEU THR THR GLN GLN LYS LEU ALA GLY VAL THR SEQRES 12 A 233 ALA LEU SER CYS TRP LEU PRO LEU ARG ALA SER PHE PRO SEQRES 13 A 233 GLN GLY PRO ILE GLY GLY ALA ASN ARG ASP ILE SER ILE SEQRES 14 A 233 LEU GLN CYS HIS GLY ASP CYS ASP PRO LEU VAL PRO LEU SEQRES 15 A 233 MET PHE GLY SER LEU THR VAL GLU LYS LEU LYS THR LEU SEQRES 16 A 233 VAL ASN PRO ALA ASN VAL THR PHE LYS THR TYR GLU GLY SEQRES 17 A 233 MET MET HIS SER SER CYS GLN GLN GLU MET MET ASP VAL SEQRES 18 A 233 LYS GLN PHE ILE ASP LYS LEU LEU PRO PRO ILE ASP SEQRES 1 B 234 GLY SER ARG MET SER GLY ASN ASN MET SER THR PRO LEU SEQRES 2 B 234 PRO ALA ILE VAL PRO ALA ALA ARG LYS ALA THR ALA ALA SEQRES 3 B 234 VAL ILE PHE LEU HIS GLY LEU GLY ASP THR GLY HIS GLY SEQRES 4 B 234 TRP ALA GLU ALA PHE ALA GLY ILE ARG SER SER HIS ILE SEQRES 5 B 234 LYS TYR ILE CYS PRO HIS ALA PRO VAL ARG PRO VAL THR SEQRES 6 B 234 LEU ASN MET ASN VAL ALA MET PRO SER TRP PHE ASP ILE SEQRES 7 B 234 ILE GLY LEU SER PRO ASP SER GLN GLU ASP GLU SER GLY SEQRES 8 B 234 ILE LYS GLN ALA ALA GLU ASN ILE LYS ALA LEU ILE ASP SEQRES 9 B 234 GLN GLU VAL LYS ASN GLY ILE PRO SER ASN ARG ILE ILE SEQRES 10 B 234 LEU GLY GLY PHE SER GLN GLY GLY ALA LEU SER LEU TYR SEQRES 11 B 234 THR ALA LEU THR THR GLN GLN LYS LEU ALA GLY VAL THR SEQRES 12 B 234 ALA LEU SER CYS TRP LEU PRO LEU ARG ALA SER PHE PRO SEQRES 13 B 234 GLN GLY PRO ILE GLY GLY ALA ASN ARG ASP ILE SER ILE SEQRES 14 B 234 LEU GLN CYS HIS GLY ASP CYS ASP PRO LEU VAL PRO LEU SEQRES 15 B 234 MET PHE GLY SER LEU THR VAL GLU LYS LEU LYS THR LEU SEQRES 16 B 234 VAL ASN PRO ALA ASN VAL THR PHE LYS THR TYR GLU GLY SEQRES 17 B 234 MET MET HIS SER SER CYS GLN GLN GLU MET MET ASP VAL SEQRES 18 B 234 LYS GLN PHE ILE ASP LYS LEU LEU PRO PRO ILE ASP ALA SEQRES 1 C 233 GLY SER ARG MET SER GLY ASN ASN MET SER THR PRO LEU SEQRES 2 C 233 PRO ALA ILE VAL PRO ALA ALA ARG LYS ALA THR ALA ALA SEQRES 3 C 233 VAL ILE PHE LEU HIS GLY LEU GLY ASP THR GLY HIS GLY SEQRES 4 C 233 TRP ALA GLU ALA PHE ALA GLY ILE ARG SER SER HIS ILE SEQRES 5 C 233 LYS TYR ILE CYS PRO HIS ALA PRO VAL ARG PRO VAL THR SEQRES 6 C 233 LEU ASN MET ASN VAL ALA MET PRO SER TRP PHE ASP ILE SEQRES 7 C 233 ILE GLY LEU SER PRO ASP SER GLN GLU ASP GLU SER GLY SEQRES 8 C 233 ILE LYS GLN ALA ALA GLU ASN ILE LYS ALA LEU ILE ASP SEQRES 9 C 233 GLN GLU VAL LYS ASN GLY ILE PRO SER ASN ARG ILE ILE SEQRES 10 C 233 LEU GLY GLY PHE SER GLN GLY GLY ALA LEU SER LEU TYR SEQRES 11 C 233 THR ALA LEU THR THR GLN GLN LYS LEU ALA GLY VAL THR SEQRES 12 C 233 ALA LEU SER CYS TRP LEU PRO LEU ARG ALA SER PHE PRO SEQRES 13 C 233 GLN GLY PRO ILE GLY GLY ALA ASN ARG ASP ILE SER ILE SEQRES 14 C 233 LEU GLN CYS HIS GLY ASP CYS ASP PRO LEU VAL PRO LEU SEQRES 15 C 233 MET PHE GLY SER LEU THR VAL GLU LYS LEU LYS THR LEU SEQRES 16 C 233 VAL ASN PRO ALA ASN VAL THR PHE LYS THR TYR GLU GLY SEQRES 17 C 233 MET MET HIS SER SER CYS GLN GLN GLU MET MET ASP VAL SEQRES 18 C 233 LYS GLN PHE ILE ASP LYS LEU LEU PRO PRO ILE ASP SEQRES 1 D 233 GLY SER ARG MET SER GLY ASN ASN MET SER THR PRO LEU SEQRES 2 D 233 PRO ALA ILE VAL PRO ALA ALA ARG LYS ALA THR ALA ALA SEQRES 3 D 233 VAL ILE PHE LEU HIS GLY LEU GLY ASP THR GLY HIS GLY SEQRES 4 D 233 TRP ALA GLU ALA PHE ALA GLY ILE ARG SER SER HIS ILE SEQRES 5 D 233 LYS TYR ILE CYS PRO HIS ALA PRO VAL ARG PRO VAL THR SEQRES 6 D 233 LEU ASN MET ASN VAL ALA MET PRO SER TRP PHE ASP ILE SEQRES 7 D 233 ILE GLY LEU SER PRO ASP SER GLN GLU ASP GLU SER GLY SEQRES 8 D 233 ILE LYS GLN ALA ALA GLU ASN ILE LYS ALA LEU ILE ASP SEQRES 9 D 233 GLN GLU VAL LYS ASN GLY ILE PRO SER ASN ARG ILE ILE SEQRES 10 D 233 LEU GLY GLY PHE SER GLN GLY GLY ALA LEU SER LEU TYR SEQRES 11 D 233 THR ALA LEU THR THR GLN GLN LYS LEU ALA GLY VAL THR SEQRES 12 D 233 ALA LEU SER CYS TRP LEU PRO LEU ARG ALA SER PHE PRO SEQRES 13 D 233 GLN GLY PRO ILE GLY GLY ALA ASN ARG ASP ILE SER ILE SEQRES 14 D 233 LEU GLN CYS HIS GLY ASP CYS ASP PRO LEU VAL PRO LEU SEQRES 15 D 233 MET PHE GLY SER LEU THR VAL GLU LYS LEU LYS THR LEU SEQRES 16 D 233 VAL ASN PRO ALA ASN VAL THR PHE LYS THR TYR GLU GLY SEQRES 17 D 233 MET MET HIS SER SER CYS GLN GLN GLU MET MET ASP VAL SEQRES 18 D 233 LYS GLN PHE ILE ASP LYS LEU LEU PRO PRO ILE ASP HET GOL A 301 14 HET GOL A 302 14 HET PLM B 401 49 HET GOL C 601 14 HET GOL D 301 14 HET PLM D 302 27 HETNAM GOL GLYCEROL HETNAM PLM PALMITIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 4(C3 H8 O3) FORMUL 7 PLM 2(C16 H32 O2) FORMUL 11 HOH *132(H2 O) HELIX 1 AA1 GLY A 34 GLY A 43 1 10 HELIX 2 AA2 THR A 62 MET A 65 5 4 HELIX 3 AA3 ASP A 85 ASN A 106 1 22 HELIX 4 AA4 PRO A 109 ASN A 111 5 3 HELIX 5 AA5 SER A 119 LEU A 130 1 12 HELIX 6 AA6 LEU A 148 PHE A 152 5 5 HELIX 7 AA7 GLY A 159 ILE A 164 5 6 HELIX 8 AA8 PRO A 178 VAL A 193 1 16 HELIX 9 AA9 ASN A 194 ALA A 196 5 3 HELIX 10 AB1 CYS A 211 LEU A 226 1 16 HELIX 11 AB2 GLY B 34 GLY B 43 1 10 HELIX 12 AB3 THR B 62 MET B 65 5 4 HELIX 13 AB4 ASP B 85 ASN B 106 1 22 HELIX 14 AB5 PRO B 109 ASN B 111 5 3 HELIX 15 AB6 SER B 119 THR B 131 1 13 HELIX 16 AB7 LEU B 148 PHE B 152 5 5 HELIX 17 AB8 PRO B 178 VAL B 193 1 16 HELIX 18 AB9 ASN B 194 ALA B 196 5 3 HELIX 19 AC1 CYS B 211 LEU B 226 1 16 HELIX 20 AC2 GLY C 34 GLY C 43 1 10 HELIX 21 AC3 THR C 62 MET C 65 5 4 HELIX 22 AC4 ASP C 85 ASN C 106 1 22 HELIX 23 AC5 PRO C 109 ASN C 111 5 3 HELIX 24 AC6 SER C 119 THR C 132 1 14 HELIX 25 AC7 LEU C 148 PHE C 152 5 5 HELIX 26 AC8 PRO C 178 VAL C 193 1 16 HELIX 27 AC9 ASN C 194 ALA C 196 5 3 HELIX 28 AD1 CYS C 211 LEU C 226 1 16 HELIX 29 AD2 GLY D 34 GLY D 43 1 10 HELIX 30 AD3 THR D 62 MET D 65 5 4 HELIX 31 AD4 ASP D 85 LYS D 105 1 21 HELIX 32 AD5 PRO D 109 ASN D 111 5 3 HELIX 33 AD6 SER D 119 THR D 132 1 14 HELIX 34 AD7 LEU D 148 PHE D 152 5 5 HELIX 35 AD8 PRO D 178 VAL D 193 1 16 HELIX 36 AD9 ASN D 194 ALA D 196 5 3 HELIX 37 AE1 CYS D 211 LEU D 226 1 16 SHEET 1 AA1 7 ALA A 12 VAL A 14 0 SHEET 2 AA1 7 ILE A 49 CYS A 53 -1 O CYS A 53 N ALA A 12 SHEET 3 AA1 7 ALA A 22 LEU A 27 1 N VAL A 24 O LYS A 50 SHEET 4 AA1 7 ILE A 113 PHE A 118 1 O ILE A 114 N ILE A 25 SHEET 5 AA1 7 GLY A 138 LEU A 142 1 O GLY A 138 N LEU A 115 SHEET 6 AA1 7 ILE A 166 GLY A 171 1 O LEU A 167 N VAL A 139 SHEET 7 AA1 7 VAL A 198 TYR A 203 1 O LYS A 201 N GLN A 168 SHEET 1 AA2 2 VAL A 58 PRO A 60 0 SHEET 2 AA2 2 ALA A 68 PRO A 70 -1 O MET A 69 N ARG A 59 SHEET 1 AA3 7 ALA B 12 VAL B 14 0 SHEET 2 AA3 7 ILE B 49 CYS B 53 -1 O TYR B 51 N VAL B 14 SHEET 3 AA3 7 ALA B 22 LEU B 27 1 N VAL B 24 O ILE B 52 SHEET 4 AA3 7 ILE B 113 PHE B 118 1 O PHE B 118 N LEU B 27 SHEET 5 AA3 7 GLY B 138 LEU B 142 1 O LEU B 142 N GLY B 117 SHEET 6 AA3 7 SER B 165 GLY B 171 1 O LEU B 167 N VAL B 139 SHEET 7 AA3 7 VAL B 198 TYR B 203 1 O THR B 199 N GLN B 168 SHEET 1 AA4 2 VAL B 58 PRO B 60 0 SHEET 2 AA4 2 ALA B 68 PRO B 70 -1 O MET B 69 N ARG B 59 SHEET 1 AA5 7 ALA C 12 VAL C 14 0 SHEET 2 AA5 7 ILE C 49 CYS C 53 -1 O CYS C 53 N ALA C 12 SHEET 3 AA5 7 ALA C 22 LEU C 27 1 N VAL C 24 O ILE C 52 SHEET 4 AA5 7 ILE C 113 PHE C 118 1 O ILE C 114 N ALA C 23 SHEET 5 AA5 7 GLY C 138 LEU C 142 1 O LEU C 142 N GLY C 117 SHEET 6 AA5 7 SER C 165 GLY C 171 1 O LEU C 167 N VAL C 139 SHEET 7 AA5 7 VAL C 198 TYR C 203 1 O TYR C 203 N HIS C 170 SHEET 1 AA6 2 VAL C 58 PRO C 60 0 SHEET 2 AA6 2 ALA C 68 PRO C 70 -1 O MET C 69 N ARG C 59 SHEET 1 AA7 7 ALA D 12 VAL D 14 0 SHEET 2 AA7 7 ILE D 49 CYS D 53 -1 O CYS D 53 N ALA D 12 SHEET 3 AA7 7 ALA D 22 LEU D 27 1 N VAL D 24 O ILE D 52 SHEET 4 AA7 7 ILE D 113 PHE D 118 1 O ILE D 114 N ILE D 25 SHEET 5 AA7 7 GLY D 138 LEU D 142 1 O LEU D 142 N GLY D 117 SHEET 6 AA7 7 ILE D 166 GLY D 171 1 O LEU D 167 N VAL D 139 SHEET 7 AA7 7 VAL D 198 TYR D 203 1 O THR D 199 N GLN D 168 SHEET 1 AA8 2 VAL D 58 PRO D 60 0 SHEET 2 AA8 2 ALA D 68 PRO D 70 -1 O MET D 69 N ARG D 59 SITE 1 AC1 2 TRP A 37 MET B 65 SITE 1 AC2 3 MET A 65 HOH A 403 GLY B 36 SITE 1 AC3 9 LEU B 30 LEU B 78 SER B 119 GLN B 120 SITE 2 AC3 9 TRP B 145 ARG B 149 PHE B 181 THR B 185 SITE 3 AC3 9 HOH B 505 SITE 1 AC4 5 ASP C 32 GLY C 36 TRP C 37 SER C 210 SITE 2 AC4 5 HOH C 722 SITE 1 AC5 6 MET C 65 ASP D 32 GLY D 36 TRP D 37 SITE 2 AC5 6 SER D 210 HOH D 402 SITE 1 AC6 11 LEU D 30 ILE D 75 GLY D 77 LEU D 78 SITE 2 AC6 11 SER D 79 SER D 119 GLN D 120 TRP D 145 SITE 3 AC6 11 VAL D 177 PHE D 181 HOH D 407 CRYST1 146.138 160.738 40.679 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006843 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024583 0.00000