HEADER OXIDOREDUCTASE 13-JAN-19 6QGV TITLE HIF PROLYL HYDROXYLASE 2 (PHD2/ EGLN1) IN COMPLEX WITH A TITLE 2 SPIRO[4.5]DECANONE INHIBITOR (JPHM-2-167) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2,HPH-2,PROLYL COMPND 5 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2,PHD2,SM-20; COMPND 6 EC: 1.14.11.29; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: CATALYTIC DOMAIN (AA 181-407) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN1, C1ORF12, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS OXIDOREDUCTASE, NON-HEME DIOXYGENASE, IRON, 2-OXOGLUTARATE, HYPOXIA- KEYWDS 2 INDUCIBLE FACTOR, HIF, HIF PROLYL HYDROXYLASE DOMAIN 2, PHD2, EGLN1, KEYWDS 3 OXYGENASE, HYPOXIA, DNA-BINDING, METAL-BINDING, TRANSCRIPTION, KEYWDS 4 HELIX-LOOP-HELIX-BETA, DSBH, FACIAL TRIAD, CYTOPLASM, KEYWDS 5 TRANSCRIPTION/EPIGENETIC REGULATION, SIGNALING, DEVELOPMENT, CELL KEYWDS 6 STRUCTURE, BETA-HYDROXYLATION, TRANSCRIPTION ACTIVATOR/INHIBITOR, KEYWDS 7 UBL CONJUGATION, POLYMORPHISM, VITAMIN C, ZINC-FINGER, FAMILIAL KEYWDS 8 ERYTHROCYTOSIS, BREAST CANCER, TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,J.P.HOLT-MARTYN,M.Z.RAHMAN,C.J.SCHOFIELD REVDAT 4 24-JAN-24 6QGV 1 REMARK REVDAT 3 24-FEB-21 6QGV 1 JRNL REVDAT 2 20-JAN-21 6QGV 1 JRNL REMARK REVDAT 1 05-FEB-20 6QGV 0 JRNL AUTH J.P.HOLT-MARTYN,A.TUMBER,M.Z.RAHMAN,K.LIPPL,W.FIGG JR., JRNL AUTH 2 M.A.MCDONOUGH,R.CHOWDHURY,C.J.SCHOFIELD JRNL TITL STUDIES ON SPIRO[4.5]DECANONE PROLYL HYDROXYLASE DOMAIN JRNL TITL 2 INHIBITORS. JRNL REF MEDCHEMCOMM V. 10 500 2019 JRNL REFN ESSN 2040-2511 JRNL PMID 31057728 JRNL DOI 10.1039/C8MD00548F REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.CHOWDHURY,J.I.CANDELA-LENA,M.C.CHAN,D.J.GREENALD,K.K.YEOH, REMARK 1 AUTH 2 Y.M.TIAN,M.A.MCDONOUGH,A.TUMBER,N.R.ROSE,A.CONEJO-GARCIA, REMARK 1 AUTH 3 M.DEMETRIADES,S.MATHAVAN,A.KAWAMURA,M.K.LEE,F.VAN EEDEN, REMARK 1 AUTH 4 C.W.PUGH,P.J.RATCLIFFE,C.J.SCHOFIELD REMARK 1 TITL SELECTIVE SMALL MOLECULE PROBES FOR THE HYPOXIA INDUCIBLE REMARK 1 TITL 2 FACTOR (HIF) PROLYL HYDROXYLASES. REMARK 1 REF ACS CHEM.BIOL. V. 8 1488 2013 REMARK 1 REFN ESSN 1554-8937 REMARK 1 PMID 23683440 REMARK 1 DOI 10.1021/CB400088Q REMARK 1 REFERENCE 2 REMARK 1 AUTH J.P.HOLT-MARTYN,A.TUMBER,M.Z.RAHMAN,K.LIPPL,W.FIGG JR., REMARK 1 AUTH 2 M.A.MCDONOUGH,R.CHOWDHURY,C.J.SCHOFIELD REMARK 1 TITL STUDIES ON SPIRO[4.5]DECANONE PROLYL HYDROXYLASE DOMAIN REMARK 1 TITL 2 INHIBITORS. REMARK 1 REF MEDCHEMCOMM V. 10 500 2019 REMARK 1 REFN ESSN 2040-2511 REMARK 1 PMID 31057728 REMARK 1 DOI 10.1039/C8MD00548F REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.0877 - 3.5996 1.00 2744 144 0.1625 0.1782 REMARK 3 2 3.5996 - 2.8571 1.00 2660 146 0.1525 0.1473 REMARK 3 3 2.8571 - 2.4960 1.00 2643 136 0.1568 0.1742 REMARK 3 4 2.4960 - 2.2678 1.00 2616 159 0.1502 0.1678 REMARK 3 5 2.2678 - 2.1052 1.00 2607 157 0.1478 0.1789 REMARK 3 6 2.1052 - 1.9811 1.00 2608 149 0.1417 0.1650 REMARK 3 7 1.9811 - 1.8819 1.00 2619 129 0.1467 0.1494 REMARK 3 8 1.8819 - 1.7999 1.00 2643 120 0.1468 0.1830 REMARK 3 9 1.7999 - 1.7306 1.00 2639 126 0.1425 0.1713 REMARK 3 10 1.7306 - 1.6709 1.00 2579 150 0.1429 0.1683 REMARK 3 11 1.6709 - 1.6187 1.00 2632 136 0.1565 0.1777 REMARK 3 12 1.6187 - 1.5724 1.00 2595 136 0.1560 0.1791 REMARK 3 13 1.5724 - 1.5310 1.00 2613 143 0.1700 0.2195 REMARK 3 14 1.5310 - 1.4936 1.00 2605 129 0.1788 0.2035 REMARK 3 15 1.4936 - 1.4597 1.00 2618 130 0.2028 0.2185 REMARK 3 16 1.4597 - 1.4286 1.00 2610 125 0.2165 0.2393 REMARK 3 17 1.4286 - 1.4000 1.00 2603 146 0.2399 0.2914 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BULK SOLVENT MODELLING METHOD USED : FLAT REMARK 3 MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.80 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1728 REMARK 3 ANGLE : 1.397 2368 REMARK 3 CHIRALITY : 0.098 240 REMARK 3 PLANARITY : 0.010 314 REMARK 3 DIHEDRAL : 20.109 622 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QGV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 60.032 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.20 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.70 REMARK 200 R MERGE FOR SHELL (I) : 1.64600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BQX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 5% V/V 2 REMARK 280 -PROPANOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 60.03250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.65978 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 28.85433 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 60.03250 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 34.65978 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 28.85433 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 60.03250 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 34.65978 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 28.85433 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 60.03250 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 34.65978 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.85433 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 60.03250 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 34.65978 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 28.85433 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 60.03250 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 34.65978 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.85433 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.31956 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 57.70867 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 69.31956 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 57.70867 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 69.31956 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 57.70867 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 69.31956 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 57.70867 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 69.31956 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 57.70867 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 69.31956 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 57.70867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 505 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 MET A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 ASN A 182 REMARK 465 GLY A 183 REMARK 465 GLN A 184 REMARK 465 THR A 185 REMARK 465 LYS A 186 REMARK 465 PRO A 187 REMARK 465 ASP A 231 REMARK 465 THR A 232 REMARK 465 GLY A 233 REMARK 465 LYS A 234 REMARK 465 PHE A 235 REMARK 465 THR A 236 REMARK 465 ASP A 237 REMARK 465 GLY A 238 REMARK 465 GLN A 239 REMARK 465 LEU A 240 REMARK 465 VAL A 241 REMARK 465 SER A 242 REMARK 465 GLN A 243 REMARK 465 LYS A 244 REMARK 465 SER A 245 REMARK 465 ASP A 246 REMARK 465 SER A 247 REMARK 465 SER A 248 REMARK 465 LYS A 249 REMARK 465 ASP A 250 REMARK 465 ILE A 251 REMARK 465 ARG A 252 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 191 CG CD1 CD2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 216 CD CE NZ REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 LYS A 262 CD CE NZ REMARK 470 ASN A 284 CG OD1 ND2 REMARK 470 LYS A 286 CD CE NZ REMARK 470 SER A 289 OG REMARK 470 LYS A 291 CD CE NZ REMARK 470 ARG A 312 CZ NH1 NH2 REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 ASP A 335 CG OD1 OD2 REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 LYS A 359 CE NZ REMARK 470 GLU A 407 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -60.75 -129.31 REMARK 500 ASN A 318 32.78 -145.75 REMARK 500 PHE A 346 78.83 -117.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 ASP A 315 OD1 94.7 REMARK 620 3 HIS A 374 NE2 84.2 92.2 REMARK 620 4 J2H A 502 N30 101.6 161.1 98.9 REMARK 620 5 J2H A 502 N27 87.6 91.8 171.1 79.4 REMARK 620 6 HOH A 626 O 174.1 87.1 90.1 77.7 98.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J2H A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 DBREF 6QGV A 181 407 UNP Q9GZT9 EGLN1_HUMAN 181 407 SEQADV 6QGV GLY A 175 UNP Q9GZT9 EXPRESSION TAG SEQADV 6QGV SER A 176 UNP Q9GZT9 EXPRESSION TAG SEQADV 6QGV HIS A 177 UNP Q9GZT9 EXPRESSION TAG SEQADV 6QGV MET A 178 UNP Q9GZT9 EXPRESSION TAG SEQADV 6QGV ALA A 179 UNP Q9GZT9 EXPRESSION TAG SEQADV 6QGV SER A 180 UNP Q9GZT9 EXPRESSION TAG SEQRES 1 A 233 GLY SER HIS MET ALA SER PRO ASN GLY GLN THR LYS PRO SEQRES 2 A 233 LEU PRO ALA LEU LYS LEU ALA LEU GLU TYR ILE VAL PRO SEQRES 3 A 233 CYS MET ASN LYS HIS GLY ILE CYS VAL VAL ASP ASP PHE SEQRES 4 A 233 LEU GLY LYS GLU THR GLY GLN GLN ILE GLY ASP GLU VAL SEQRES 5 A 233 ARG ALA LEU HIS ASP THR GLY LYS PHE THR ASP GLY GLN SEQRES 6 A 233 LEU VAL SER GLN LYS SER ASP SER SER LYS ASP ILE ARG SEQRES 7 A 233 GLY ASP LYS ILE THR TRP ILE GLU GLY LYS GLU PRO GLY SEQRES 8 A 233 CYS GLU THR ILE GLY LEU LEU MET SER SER MET ASP ASP SEQRES 9 A 233 LEU ILE ARG HIS CYS ASN GLY LYS LEU GLY SER TYR LYS SEQRES 10 A 233 ILE ASN GLY ARG THR LYS ALA MET VAL ALA CYS TYR PRO SEQRES 11 A 233 GLY ASN GLY THR GLY TYR VAL ARG HIS VAL ASP ASN PRO SEQRES 12 A 233 ASN GLY ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU SEQRES 13 A 233 ASN LYS ASP TRP ASP ALA LYS VAL SER GLY GLY ILE LEU SEQRES 14 A 233 ARG ILE PHE PRO GLU GLY LYS ALA GLN PHE ALA ASP ILE SEQRES 15 A 233 GLU PRO LYS PHE ASP ARG LEU LEU PHE PHE TRP SER ASP SEQRES 16 A 233 ARG ARG ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR SEQRES 17 A 233 ARG TYR ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU SEQRES 18 A 233 ARG ALA ARG ALA LYS VAL LYS TYR LEU THR GLY GLU HET MN A 501 1 HET J2H A 502 66 HET GOL A 503 14 HET IPA A 504 12 HET SO4 A 505 5 HET SO4 A 506 5 HETNAM MN MANGANESE (II) ION HETNAM J2H 8-[(3-METHYLPYRIDIN-2-YL)METHYL]-3-(4-PHENYLPHENYL)-1- HETNAM 2 J2H PYRIMIDIN-2-YL-1,3,8-TRIAZASPIRO[4.5]DECANE-2,4-DIONE HETNAM GOL GLYCEROL HETNAM IPA ISOPROPYL ALCOHOL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IPA 2-PROPANOL FORMUL 2 MN MN 2+ FORMUL 3 J2H C30 H28 N6 O2 FORMUL 4 GOL C3 H8 O3 FORMUL 5 IPA C3 H8 O FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 HOH *180(H2 O) HELIX 1 AA1 PRO A 189 TYR A 197 1 9 HELIX 2 AA2 TYR A 197 GLY A 206 1 10 HELIX 3 AA3 GLY A 215 LEU A 229 1 15 HELIX 4 AA4 CYS A 266 HIS A 282 1 17 HELIX 5 AA5 ASP A 335 GLY A 340 1 6 HELIX 6 AA6 ALA A 393 VAL A 401 1 9 SHEET 1 AA1 6 ILE A 207 VAL A 210 0 SHEET 2 AA1 6 LEU A 363 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA1 6 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA1 6 ARG A 383 ASP A 392 -1 O ILE A 386 N TYR A 328 SHEET 5 AA1 6 ALA A 298 TYR A 303 -1 N MET A 299 O THR A 387 SHEET 6 AA1 6 LYS A 255 ILE A 259 -1 N THR A 257 O VAL A 300 SHEET 1 AA2 5 ILE A 207 VAL A 210 0 SHEET 2 AA2 5 LEU A 363 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA2 5 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA2 5 ARG A 383 ASP A 392 -1 O ILE A 386 N TYR A 328 SHEET 5 AA2 5 ILE A 292 ARG A 295 -1 N GLY A 294 O PHE A 391 SHEET 1 AA3 4 TYR A 310 HIS A 313 0 SHEET 2 AA3 4 HIS A 374 VAL A 376 -1 O HIS A 374 N HIS A 313 SHEET 3 AA3 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 AA3 4 ALA A 354 ILE A 356 -1 O ILE A 356 N LEU A 343 LINK NE2 HIS A 313 MN MN A 501 1555 1555 2.11 LINK OD1 ASP A 315 MN MN A 501 1555 1555 2.16 LINK NE2 HIS A 374 MN MN A 501 1555 1555 2.10 LINK MN MN A 501 N30 J2H A 502 1555 1555 2.09 LINK MN MN A 501 N27 J2H A 502 1555 1555 2.30 LINK MN MN A 501 O HOH A 626 1555 1555 2.17 SITE 1 AC1 5 HIS A 313 ASP A 315 HIS A 374 J2H A 502 SITE 2 AC1 5 HOH A 626 SITE 1 AC2 17 TRP A 258 THR A 296 TYR A 303 HIS A 313 SITE 2 AC2 17 ASP A 315 ASP A 320 ARG A 322 HIS A 374 SITE 3 AC2 17 VAL A 376 TRP A 389 LYS A 402 TYR A 403 SITE 4 AC2 17 MN A 501 HOH A 626 HOH A 686 HOH A 707 SITE 5 AC2 17 HOH A 715 SITE 1 AC3 6 LYS A 350 ALA A 351 GLN A 352 HOH A 605 SITE 2 AC3 6 HOH A 703 HOH A 716 SITE 1 AC4 4 ASP A 277 ARG A 281 ASN A 293 GLY A 294 SITE 1 AC5 6 PRO A 264 GLY A 265 GLU A 267 THR A 405 SITE 2 AC5 6 GLY A 406 HOH A 683 SITE 1 AC6 3 ARG A 344 ASP A 355 GLN A 377 CRYST1 120.065 120.065 86.563 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008329 0.004809 0.000000 0.00000 SCALE2 0.000000 0.009617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011552 0.00000 CONECT 1594 3145 CONECT 1624 3145 CONECT 2552 3145 CONECT 3145 1594 1624 2552 3180 CONECT 3145 3181 3276 CONECT 3146 3147 3163 3184 CONECT 3147 3146 3148 3185 CONECT 3148 3147 3149 3186 CONECT 3149 3148 3162 3187 CONECT 3150 3156 3161 3188 CONECT 3151 3152 3180 3189 3190 CONECT 3152 3151 3153 3191 3192 CONECT 3153 3152 3154 3157 3177 CONECT 3154 3153 3168 3193 3194 CONECT 3155 3176 3177 3183 CONECT 3156 3150 3158 3195 CONECT 3157 3153 3176 3182 CONECT 3158 3156 3159 3176 CONECT 3159 3158 3160 3196 CONECT 3160 3159 3161 3197 CONECT 3161 3150 3160 3162 CONECT 3162 3149 3161 3163 CONECT 3163 3146 3162 3198 CONECT 3164 3177 3178 3179 CONECT 3165 3166 3178 3199 CONECT 3166 3165 3167 3200 CONECT 3167 3166 3179 3201 CONECT 3168 3154 3180 3202 3203 CONECT 3169 3170 3180 3204 3205 CONECT 3170 3169 3174 3181 CONECT 3171 3172 3181 3206 CONECT 3172 3171 3173 3207 CONECT 3173 3172 3174 3208 CONECT 3174 3170 3173 3175 CONECT 3175 3174 3209 3210 3211 CONECT 3176 3155 3157 3158 CONECT 3177 3153 3155 3164 CONECT 3178 3164 3165 CONECT 3179 3164 3167 CONECT 3180 3145 3151 3168 3169 CONECT 3181 3145 3170 3171 CONECT 3182 3157 CONECT 3183 3155 CONECT 3184 3146 CONECT 3185 3147 CONECT 3186 3148 CONECT 3187 3149 CONECT 3188 3150 CONECT 3189 3151 CONECT 3190 3151 CONECT 3191 3152 CONECT 3192 3152 CONECT 3193 3154 CONECT 3194 3154 CONECT 3195 3156 CONECT 3196 3159 CONECT 3197 3160 CONECT 3198 3163 CONECT 3199 3165 CONECT 3200 3166 CONECT 3201 3167 CONECT 3202 3168 CONECT 3203 3168 CONECT 3204 3169 CONECT 3205 3169 CONECT 3206 3171 CONECT 3207 3172 CONECT 3208 3173 CONECT 3209 3175 CONECT 3210 3175 CONECT 3211 3175 CONECT 3212 3213 3214 3218 3219 CONECT 3213 3212 3220 CONECT 3214 3212 3215 3216 3221 CONECT 3215 3214 3222 CONECT 3216 3214 3217 3223 3224 CONECT 3217 3216 3225 CONECT 3218 3212 CONECT 3219 3212 CONECT 3220 3213 CONECT 3221 3214 CONECT 3222 3215 CONECT 3223 3216 CONECT 3224 3216 CONECT 3225 3217 CONECT 3226 3227 3230 3231 3232 CONECT 3227 3226 3228 3229 3233 CONECT 3228 3227 3234 3235 3236 CONECT 3229 3227 3237 CONECT 3230 3226 CONECT 3231 3226 CONECT 3232 3226 CONECT 3233 3227 CONECT 3234 3228 CONECT 3235 3228 CONECT 3236 3228 CONECT 3237 3229 CONECT 3238 3239 3240 3241 3242 CONECT 3239 3238 CONECT 3240 3238 CONECT 3241 3238 CONECT 3242 3238 CONECT 3243 3244 3245 3246 3247 CONECT 3244 3243 CONECT 3245 3243 CONECT 3246 3243 CONECT 3247 3243 CONECT 3276 3145 MASTER 418 0 6 6 15 0 13 6 1763 1 108 18 END