HEADER HYDROLASE 18-JAN-19 6QID TITLE CRYSTAL STRUCTURE OF DEAH-BOX ATPASE PRP43-S387A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRP43; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS SOURCE 3 144.50 / IMI 039719); SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 GENE: CTHT_0005780; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA II KEYWDS SPLICING, DEAH, ATPASE, HELICASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.HAMANN,R.FICNER,M.ENDERS REVDAT 4 24-JAN-24 6QID 1 REMARK LINK REVDAT 3 03-JUL-19 6QID 1 JRNL REVDAT 2 13-MAR-19 6QID 1 JRNL REVDAT 1 06-MAR-19 6QID 0 JRNL AUTH F.HAMANN,M.ENDERS,R.FICNER JRNL TITL STRUCTURAL BASIS FOR RNA TRANSLOCATION BY DEAH-BOX ATPASES. JRNL REF NUCLEIC ACIDS RES. V. 47 4349 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 30828714 JRNL DOI 10.1093/NAR/GKZ150 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 56985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6188 - 5.9739 1.00 2900 153 0.1771 0.1763 REMARK 3 2 5.9739 - 4.7452 1.00 2802 147 0.1670 0.2027 REMARK 3 3 4.7452 - 4.1464 1.00 2755 145 0.1452 0.1610 REMARK 3 4 4.1464 - 3.7678 1.00 2743 145 0.1498 0.1575 REMARK 3 5 3.7678 - 3.4979 1.00 2720 143 0.1564 0.1848 REMARK 3 6 3.4979 - 3.2919 1.00 2713 143 0.1750 0.1911 REMARK 3 7 3.2919 - 3.1271 1.00 2721 143 0.1854 0.2286 REMARK 3 8 3.1271 - 2.9911 1.00 2695 142 0.1957 0.2109 REMARK 3 9 2.9911 - 2.8760 1.00 2717 143 0.1949 0.2315 REMARK 3 10 2.8760 - 2.7768 1.00 2689 141 0.2006 0.2491 REMARK 3 11 2.7768 - 2.6900 1.00 2706 143 0.2038 0.2176 REMARK 3 12 2.6900 - 2.6131 1.00 2673 140 0.2008 0.2690 REMARK 3 13 2.6131 - 2.5443 1.00 2698 142 0.2094 0.2325 REMARK 3 14 2.5443 - 2.4823 1.00 2679 141 0.2126 0.2438 REMARK 3 15 2.4823 - 2.4259 1.00 2702 143 0.2175 0.2594 REMARK 3 16 2.4259 - 2.3742 1.00 2668 140 0.2160 0.2494 REMARK 3 17 2.3742 - 2.3268 1.00 2702 142 0.2318 0.2634 REMARK 3 18 2.3268 - 2.2829 1.00 2658 140 0.2304 0.2812 REMARK 3 19 2.2829 - 2.2421 1.00 2679 141 0.2477 0.2586 REMARK 3 20 2.2421 - 2.2041 0.94 2515 133 0.2702 0.2829 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 1.8609 218.8680 41.6579 REMARK 3 T TENSOR REMARK 3 T11: 0.1456 T22: 0.1191 REMARK 3 T33: 0.1816 T12: -0.0053 REMARK 3 T13: -0.0096 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.1864 L22: 0.3346 REMARK 3 L33: 1.3001 L12: 0.0191 REMARK 3 L13: 0.0360 L23: 0.4257 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: 0.0111 S13: -0.0138 REMARK 3 S21: 0.0083 S22: 0.0130 S23: -0.0111 REMARK 3 S31: 0.0005 S32: 0.0387 S33: -0.0035 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QID COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54187 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R 200K-A REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57004 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 35.614 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.474 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.56600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LTJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7, 3% PEG4000, 35% MPD, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.41000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.61500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.61500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.41000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -175.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 763 REMARK 465 ALA A 764 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 GLU A 494 CG CD OE1 OE2 REMARK 470 ARG A 569 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 672 CG OD1 ND2 REMARK 470 LYS A 680 CG CD CE NZ REMARK 470 GLU A 741 CG CD OE1 OE2 REMARK 470 ARG A 755 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 448 CD REMARK 480 LYS A 630 CD REMARK 480 GLU A 638 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 173 -70.38 -95.84 REMARK 500 PHE A 262 53.10 -94.97 REMARK 500 PRO A 305 -175.74 -69.01 REMARK 500 ALA A 387 -41.61 73.52 REMARK 500 CYS A 543 43.24 -140.37 REMARK 500 THR A 708 -154.75 -124.99 REMARK 500 THR A 715 74.31 60.56 REMARK 500 TYR A 732 35.57 -99.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2090 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A2091 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A2092 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A2093 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A2094 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A2095 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A2096 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A2097 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH A2098 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH A2099 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH A2100 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH A2101 DISTANCE = 8.57 ANGSTROMS REMARK 525 HOH A2102 DISTANCE = 9.12 ANGSTROMS REMARK 525 HOH A2103 DISTANCE = 9.75 ANGSTROMS REMARK 525 HOH A2104 DISTANCE = 11.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1319 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 126 OG1 REMARK 620 2 ADP A1322 O2B 93.4 REMARK 620 3 HOH A1484 O 102.1 80.3 REMARK 620 4 HOH A1524 O 91.3 169.7 89.8 REMARK 620 5 HOH A1603 O 89.7 92.0 166.2 97.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 1309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 1312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 1322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 1323 DBREF 6QID A 61 764 UNP G0RY84 G0RY84_CHATD 61 764 SEQADV 6QID GLY A 60 UNP G0RY84 EXPRESSION TAG SEQADV 6QID ALA A 387 UNP G0RY84 SER 387 ENGINEERED MUTATION SEQRES 1 A 705 GLY THR THR ALA LYS GLN ALA GLU ALA VAL GLU ASP SER SEQRES 2 A 705 ASP ILE ASN PRO TRP THR GLY GLN ARG HIS SER GLU ARG SEQRES 3 A 705 TYR PHE LYS ILE LEU LYS ALA ARG ARG LYS LEU PRO VAL SEQRES 4 A 705 ASN LYS GLN ARG GLN GLU PHE LEU ASP LEU TYR HIS ASN SEQRES 5 A 705 ASN GLN ILE LEU VAL PHE VAL GLY GLU THR GLY SER GLY SEQRES 6 A 705 LYS THR THR GLN ILE PRO GLN TYR VAL LEU TYR ASP GLU SEQRES 7 A 705 LEU PRO HIS GLN THR GLY LYS LEU ILE ALA CYS THR GLN SEQRES 8 A 705 PRO ARG ARG VAL ALA ALA MET SER VAL ALA GLN ARG VAL SEQRES 9 A 705 ALA ASP GLU LEU ASP VAL LYS LEU GLY GLU GLU VAL GLY SEQRES 10 A 705 TYR SER ILE ARG PHE GLU ASN LYS THR SER SER LYS THR SEQRES 11 A 705 LEU LEU LYS TYR MET THR ASP GLY GLN LEU LEU ARG GLU SEQRES 12 A 705 ALA MET HIS ASP ARG ASP MET SER ARG TYR SER CYS ILE SEQRES 13 A 705 ILE LEU ASP GLU ALA HIS GLU ARG THR LEU ALA THR ASP SEQRES 14 A 705 ILE LEU MET ALA LEU LEU LYS GLN LEU SER GLU ARG ARG SEQRES 15 A 705 LYS ASP LEU LYS ILE ILE VAL MET SER ALA THR LEU ASP SEQRES 16 A 705 ALA GLN LYS PHE GLN SER TYR PHE PHE ASN ALA PRO LEU SEQRES 17 A 705 LEU ALA VAL PRO GLY ARG THR HIS PRO VAL GLU ILE PHE SEQRES 18 A 705 TYR THR PRO GLU ALA GLU ARG ASP TYR VAL GLU ALA ALA SEQRES 19 A 705 ILE ARG THR VAL LEU GLN ILE HIS ALA CYS GLU PRO GLU SEQRES 20 A 705 GLY ASP ILE LEU LEU PHE LEU THR GLY GLU GLU GLU ILE SEQRES 21 A 705 GLU ASP ALA CYS ARG ARG ILE SER LEU GLU VAL ASP GLU SEQRES 22 A 705 MET ILE ARG GLU SER ASP ALA GLY PRO MET SER VAL TYR SEQRES 23 A 705 PRO LEU TYR GLY THR LEU PRO PRO HIS GLN GLN GLN ARG SEQRES 24 A 705 ILE PHE GLU LYS ALA PRO GLN PRO PHE ARG PRO GLY GLY SEQRES 25 A 705 ARG PRO GLY ARG LYS CYS ILE VAL ALA THR ASN ILE ALA SEQRES 26 A 705 GLU THR ALA LEU THR ILE ASP GLY ILE VAL TYR VAL VAL SEQRES 27 A 705 ASP PRO GLY PHE SER LYS GLN LYS ILE TYR ASN PRO ARG SEQRES 28 A 705 THR ARG VAL GLU SER LEU LEU VAL SER PRO ILE SER LYS SEQRES 29 A 705 ALA SER ALA GLN GLN ARG ALA GLY ARG ALA GLY ARG THR SEQRES 30 A 705 ARG PRO GLY LYS CYS PHE ARG LEU TYR THR GLU GLU ALA SEQRES 31 A 705 PHE LYS LYS GLU LEU ILE GLU GLN THR TYR PRO GLU ILE SEQRES 32 A 705 LEU ARG SER ASN LEU SER ASN THR VAL LEU GLU LEU LYS SEQRES 33 A 705 LYS LEU GLY VAL GLU ASP LEU VAL HIS PHE ASP LEU MET SEQRES 34 A 705 ASP PRO PRO ALA PRO GLU THR MET MET ARG ALA LEU GLU SEQRES 35 A 705 GLU LEU ASN TYR LEU ALA CYS LEU ASP ASP ASP GLY GLU SEQRES 36 A 705 LEU THR PRO LEU GLY ASN LEU ALA SER GLU PHE PRO LEU SEQRES 37 A 705 ASP PRO ALA LEU ALA VAL MET LEU ILE SER SER PRO GLU SEQRES 38 A 705 PHE TYR CYS SER ASN GLU ILE LEU SER ILE THR SER LEU SEQRES 39 A 705 LEU SER VAL PRO GLN ILE TRP VAL ARG PRO ALA ASN ALA SEQRES 40 A 705 ARG LYS ARG ALA ASP GLU MET LYS ALA GLN PHE ALA HIS SEQRES 41 A 705 PRO ASP GLY ASP HIS LEU THR LEU LEU ASN ALA TYR HIS SEQRES 42 A 705 ALA TYR LYS GLY ALA GLU ALA ARG GLY GLU ASP MET LYS SEQRES 43 A 705 LYS TRP CYS HIS GLU HIS PHE LEU SER TYR ARG HIS LEU SEQRES 44 A 705 SER SER ALA ASP ASN VAL ARG ALA GLN LEU LYS LYS ILE SEQRES 45 A 705 MET GLU THR HIS GLY ILE GLU LEU VAL SER THR PRO PHE SEQRES 46 A 705 HIS ASP LYS ASN TYR TYR THR ASN ILE ARG ARG ALA LEU SEQRES 47 A 705 LEU ALA GLY PHE PHE MET GLN VAL ALA MET ARG GLU SER SEQRES 48 A 705 SER ASN SER LYS VAL TYR LYS THR VAL LYS ASP GLU GLN SEQRES 49 A 705 LEU VAL LEU ILE HIS PRO SER THR THR VAL THR THR PRO SEQRES 50 A 705 TYR GLU TRP VAL VAL TYR ASN GLU PHE VAL LEU THR THR SEQRES 51 A 705 LYS GLN TYR VAL ARG THR VAL THR ASN ILE ARG PRO GLU SEQRES 52 A 705 TRP LEU LEU GLU ILE ALA PRO VAL TYR TYR ASP LEU SER SEQRES 53 A 705 THR PHE GLN LYS GLY GLU ILE LYS ASN ALA LEU THR ARG SEQRES 54 A 705 VAL ALA GLU LYS ILE ARG ARG GLN GLN ALA MET LYS ALA SEQRES 55 A 705 SER LYS ALA HET MPD A1301 8 HET MPD A1302 8 HET MPD A1303 8 HET MPD A1304 8 HET MPD A1305 8 HET PEG A1306 7 HET MPD A1307 8 HET MPD A1308 8 HET MPD A1309 8 HET MPD A1310 8 HET MPD A1311 8 HET MPD A1312 8 HET PEG A1313 7 HET CL A1314 1 HET CL A1315 1 HET CL A1316 1 HET CL A1317 1 HET CL A1318 1 HET MG A1319 1 HET SO4 A1320 5 HET SO4 A1321 5 HET ADP A1322 27 HET BEF A1323 4 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM BEF BERYLLIUM TRIFLUORIDE ION FORMUL 2 MPD 11(C6 H14 O2) FORMUL 7 PEG 2(C4 H10 O3) FORMUL 15 CL 5(CL 1-) FORMUL 20 MG MG 2+ FORMUL 21 SO4 2(O4 S 2-) FORMUL 23 ADP C10 H15 N5 O10 P2 FORMUL 24 BEF BE F3 1- FORMUL 25 HOH *704(H2 O) HELIX 1 AA1 THR A 62 ASP A 71 1 10 HELIX 2 AA2 SER A 83 ARG A 94 1 12 HELIX 3 AA3 LYS A 95 LYS A 100 5 6 HELIX 4 AA4 GLN A 101 ASN A 112 1 12 HELIX 5 AA5 GLY A 124 LEU A 138 1 15 HELIX 6 AA6 PRO A 139 GLN A 141 5 3 HELIX 7 AA7 ARG A 152 LEU A 167 1 16 HELIX 8 AA8 ASP A 196 ASP A 206 1 11 HELIX 9 AA9 ALA A 220 ARG A 223 5 4 HELIX 10 AB1 THR A 224 ARG A 241 1 18 HELIX 11 AB2 ASP A 254 PHE A 262 1 9 HELIX 12 AB3 ASP A 288 GLU A 304 1 17 HELIX 13 AB4 GLY A 315 ASP A 338 1 24 HELIX 14 AB5 PRO A 352 GLN A 357 1 6 HELIX 15 AB6 ARG A 358 GLU A 361 5 4 HELIX 16 AB7 ASN A 382 GLU A 385 5 4 HELIX 17 AB8 SER A 422 GLY A 431 1 10 HELIX 18 AB9 THR A 446 LEU A 454 1 9 HELIX 19 AC1 PRO A 460 SER A 465 5 6 HELIX 20 AC2 ASN A 466 LEU A 477 1 12 HELIX 21 AC3 ALA A 492 LEU A 506 1 15 HELIX 22 AC4 THR A 516 SER A 523 1 8 HELIX 23 AC5 ASP A 528 SER A 538 1 11 HELIX 24 AC6 PRO A 539 TYR A 542 5 4 HELIX 25 AC7 CYS A 543 SER A 555 1 13 HELIX 26 AC8 PRO A 563 ASN A 565 5 3 HELIX 27 AC9 ALA A 566 ALA A 575 1 10 HELIX 28 AD1 GLY A 582 ARG A 600 1 19 HELIX 29 AD2 ASP A 603 HIS A 611 1 9 HELIX 30 AD3 SER A 614 HIS A 635 1 22 HELIX 31 AD4 ASN A 648 PHE A 662 1 15 HELIX 32 AD5 PRO A 721 ALA A 728 1 8 HELIX 33 AD6 GLY A 740 SER A 762 1 23 SHEET 1 AA1 8 GLU A 182 LYS A 184 0 SHEET 2 AA1 8 VAL A 175 ILE A 179 -1 N ILE A 179 O GLU A 182 SHEET 3 AA1 8 LEU A 191 THR A 195 1 O TYR A 193 N GLY A 176 SHEET 4 AA1 8 LEU A 145 GLN A 150 1 N GLN A 150 O MET A 194 SHEET 5 AA1 8 TYR A 212 ASP A 218 1 O ILE A 216 N ALA A 147 SHEET 6 AA1 8 LYS A 245 SER A 250 1 O ILE A 247 N LEU A 217 SHEET 7 AA1 8 ILE A 114 GLY A 119 1 N PHE A 117 O VAL A 248 SHEET 8 AA1 8 LEU A 267 VAL A 270 1 O VAL A 270 N VAL A 118 SHEET 1 AA2 6 VAL A 277 TYR A 281 0 SHEET 2 AA2 6 GLY A 439 ARG A 443 1 O CYS A 441 N GLU A 278 SHEET 3 AA2 6 ILE A 393 ASP A 398 1 N VAL A 396 O PHE A 442 SHEET 4 AA2 6 ASP A 308 PHE A 312 1 N LEU A 310 O VAL A 397 SHEET 5 AA2 6 ARG A 375 ALA A 380 1 O ILE A 378 N LEU A 311 SHEET 6 AA2 6 MET A 342 LEU A 347 1 N SER A 343 O CYS A 377 SHEET 1 AA3 2 PHE A 401 ASN A 408 0 SHEET 2 AA3 2 VAL A 413 PRO A 420 -1 O SER A 419 N SER A 402 SHEET 1 AA4 6 VAL A 665 ARG A 668 0 SHEET 2 AA4 6 VAL A 675 THR A 678 -1 O LYS A 677 N MET A 667 SHEET 3 AA4 6 LEU A 684 ILE A 687 -1 O VAL A 685 N TYR A 676 SHEET 4 AA4 6 GLN A 711 ILE A 719 1 O GLN A 711 N LEU A 686 SHEET 5 AA4 6 TRP A 699 LEU A 707 -1 N VAL A 706 O TYR A 712 SHEET 6 AA4 6 VAL A 665 ARG A 668 -1 N ALA A 666 O VAL A 700 LINK OG1 THR A 126 MG MG A1319 1555 1555 1.97 LINK MG MG A1319 O2B ADP A1322 1555 1555 2.28 LINK MG MG A1319 O HOH A1484 1555 1555 2.17 LINK MG MG A1319 O HOH A1524 1555 1555 2.21 LINK MG MG A1319 O HOH A1603 1555 1555 2.14 SITE 1 AC1 8 ARG A 152 GLU A 222 ASN A 382 GLU A 385 SITE 2 AC1 8 THR A 458 ARG A 464 SO4 A1321 HOH A1468 SITE 1 AC2 2 LYS A 595 ARG A 625 SITE 1 AC3 3 ARG A 368 GLY A 370 HOH A1560 SITE 1 AC4 3 TYR A 135 LEU A 138 PRO A 139 SITE 1 AC5 2 PRO A 399 GLU A 453 SITE 1 AC6 3 PRO A 517 HOH A1407 HOH A1495 SITE 1 AC7 4 ARG A 81 ARG A 85 ASP A 168 VAL A 169 SITE 1 AC8 3 TRP A 77 GLY A 79 ARG A 287 SITE 1 AC9 2 PRO A 460 ASP A 489 SITE 1 AD1 3 VAL A 344 TYR A 345 ARG A 358 SITE 1 AD2 4 THR A 296 GLN A 299 GLU A 304 PHE A 442 SITE 1 AD3 2 GLU A 502 GLN A 664 SITE 1 AD4 4 ALA A 251 ALA A 424 GLN A 427 GLU A 456 SITE 1 AD5 2 GLY A 349 THR A 381 SITE 1 AD6 3 ARG A 152 ARG A 153 HOH A1932 SITE 1 AD7 4 ARG A 153 ARG A 180 THR A 195 ARG A 201 SITE 1 AD8 8 THR A 126 ASP A 218 GLU A 219 ADP A1322 SITE 2 AD8 8 BEF A1323 HOH A1484 HOH A1524 HOH A1603 SITE 1 AD9 2 PRO A 517 LEU A 521 SITE 1 AE1 5 GLN A 404 LYS A 405 ARG A 464 MPD A1301 SITE 2 AE1 5 HOH A1475 SITE 1 AE2 18 GLY A 122 SER A 123 GLY A 124 LYS A 125 SITE 2 AE2 18 THR A 126 THR A 127 ARG A 162 THR A 389 SITE 3 AE2 18 ARG A 435 MG A1319 BEF A1323 HOH A1430 SITE 4 AE2 18 HOH A1471 HOH A1484 HOH A1521 HOH A1582 SITE 5 AE2 18 HOH A1669 HOH A1777 SITE 1 AE3 13 THR A 121 LYS A 125 GLU A 219 ALA A 387 SITE 2 AE3 13 ARG A 432 ARG A 435 MG A1319 ADP A1322 SITE 3 AE3 13 HOH A1460 HOH A1484 HOH A1524 HOH A1603 SITE 4 AE3 13 HOH A1622 CRYST1 88.820 105.450 119.230 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011259 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008387 0.00000