data_6QIR # _entry.id 6QIR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6QIR pdb_00006qir 10.2210/pdb6qir/pdb WWPDB D_1292100156 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-09-25 2 'Structure model' 1 1 2019-10-09 3 'Structure model' 1 2 2019-11-20 4 'Structure model' 1 3 2024-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_DOI' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6QIR _pdbx_database_status.recvd_initial_deposition_date 2019-01-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 6QIQ _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kiliszek, A.' 1 ? 'Blaszczyk, L.' 2 ? 'Rypniewski, W.' 3 ? 'Nakatani, K.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 47 _citation.language ? _citation.page_first 10906 _citation.page_last 10913 _citation.title 'Structural insights into synthetic ligands targeting A-A pairs in disease-related CAG RNA repeats.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkz832 _citation.pdbx_database_id_PubMed 31566242 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mukherjee, S.' 1 ? primary 'Blaszczyk, L.' 2 ? primary 'Rypniewski, W.' 3 ? primary 'Falschlunger, C.' 4 ? primary 'Micura, R.' 5 ? primary 'Murata, A.' 6 ? primary 'Dohno, C.' 7 ? primary 'Nakatani, K.' 8 ? primary 'Kiliszek, A.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3') ; 2564.617 4 ? ? ? ? 2 non-polymer syn CMBL3a 500.529 4 ? ? ? ? 3 water nat water 18.015 139 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCAGCAGC _entity_poly.pdbx_seq_one_letter_code_can GCAGCAGC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 CMBL3a J48 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 A n 1 4 G n 1 5 C n 1 6 A n 1 7 G n 1 8 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 J48 non-polymer . CMBL3a ? 'C26 H26 N7 O4 1' 500.529 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 A 6 6 6 A A A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 C 2 2 2 C C B . n B 1 3 A 3 3 3 A A B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 A 6 6 6 A A B . n B 1 7 G 7 7 7 G G B . n B 1 8 C 8 8 8 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 C 2 2 2 C C C . n C 1 3 A 3 3 3 A A C . n C 1 4 G 4 4 4 G G C . n C 1 5 C 5 5 5 C C C . n C 1 6 A 6 6 6 A A C . n C 1 7 G 7 7 7 G G C . n C 1 8 C 8 8 8 C C C . n D 1 1 G 1 1 1 G G D . n D 1 2 C 2 2 2 C C D . n D 1 3 A 3 3 3 A A D . n D 1 4 G 4 4 4 G G D . n D 1 5 C 5 5 5 C C D . n D 1 6 A 6 6 6 A A D . n D 1 7 G 7 7 7 G G D . n D 1 8 C 8 8 8 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 J48 1 101 1 J48 MBL A . F 2 J48 1 102 2 J48 MBL A . G 2 J48 1 101 4 J48 MBL C . H 2 J48 1 101 3 J48 MBL D . I 3 HOH 1 201 56 HOH HOH A . I 3 HOH 2 202 77 HOH HOH A . I 3 HOH 3 203 37 HOH HOH A . I 3 HOH 4 204 76 HOH HOH A . I 3 HOH 5 205 130 HOH HOH A . I 3 HOH 6 206 90 HOH HOH A . I 3 HOH 7 207 115 HOH HOH A . I 3 HOH 8 208 111 HOH HOH A . I 3 HOH 9 209 16 HOH HOH A . I 3 HOH 10 210 17 HOH HOH A . I 3 HOH 11 211 28 HOH HOH A . I 3 HOH 12 212 47 HOH HOH A . I 3 HOH 13 213 53 HOH HOH A . I 3 HOH 14 214 38 HOH HOH A . I 3 HOH 15 215 114 HOH HOH A . I 3 HOH 16 216 82 HOH HOH A . I 3 HOH 17 217 80 HOH HOH A . I 3 HOH 18 218 136 HOH HOH A . I 3 HOH 19 219 131 HOH HOH A . I 3 HOH 20 220 36 HOH HOH A . I 3 HOH 21 221 98 HOH HOH A . I 3 HOH 22 222 42 HOH HOH A . I 3 HOH 23 223 125 HOH HOH A . I 3 HOH 24 224 97 HOH HOH A . J 3 HOH 1 101 12 HOH HOH B . J 3 HOH 2 102 4 HOH HOH B . J 3 HOH 3 103 118 HOH HOH B . J 3 HOH 4 104 99 HOH HOH B . J 3 HOH 5 105 43 HOH HOH B . J 3 HOH 6 106 2 HOH HOH B . J 3 HOH 7 107 33 HOH HOH B . J 3 HOH 8 108 13 HOH HOH B . J 3 HOH 9 109 101 HOH HOH B . J 3 HOH 10 110 26 HOH HOH B . J 3 HOH 11 111 73 HOH HOH B . J 3 HOH 12 112 64 HOH HOH B . J 3 HOH 13 113 63 HOH HOH B . J 3 HOH 14 114 100 HOH HOH B . J 3 HOH 15 115 70 HOH HOH B . J 3 HOH 16 116 27 HOH HOH B . J 3 HOH 17 117 52 HOH HOH B . J 3 HOH 18 118 8 HOH HOH B . J 3 HOH 19 119 20 HOH HOH B . J 3 HOH 20 120 69 HOH HOH B . J 3 HOH 21 121 10 HOH HOH B . J 3 HOH 22 122 41 HOH HOH B . J 3 HOH 23 123 58 HOH HOH B . J 3 HOH 24 124 11 HOH HOH B . J 3 HOH 25 125 74 HOH HOH B . J 3 HOH 26 126 32 HOH HOH B . J 3 HOH 27 127 49 HOH HOH B . J 3 HOH 28 128 18 HOH HOH B . J 3 HOH 29 129 86 HOH HOH B . J 3 HOH 30 130 123 HOH HOH B . J 3 HOH 31 131 22 HOH HOH B . J 3 HOH 32 132 124 HOH HOH B . J 3 HOH 33 133 40 HOH HOH B . J 3 HOH 34 134 45 HOH HOH B . J 3 HOH 35 135 83 HOH HOH B . J 3 HOH 36 136 78 HOH HOH B . J 3 HOH 37 137 139 HOH HOH B . J 3 HOH 38 138 138 HOH HOH B . J 3 HOH 39 139 93 HOH HOH B . J 3 HOH 40 140 71 HOH HOH B . J 3 HOH 41 141 95 HOH HOH B . J 3 HOH 42 142 102 HOH HOH B . J 3 HOH 43 143 103 HOH HOH B . J 3 HOH 44 144 126 HOH HOH B . J 3 HOH 45 145 133 HOH HOH B . K 3 HOH 1 201 57 HOH HOH C . K 3 HOH 2 202 107 HOH HOH C . K 3 HOH 3 203 87 HOH HOH C . K 3 HOH 4 204 3 HOH HOH C . K 3 HOH 5 205 44 HOH HOH C . K 3 HOH 6 206 1 HOH HOH C . K 3 HOH 7 207 51 HOH HOH C . K 3 HOH 8 208 62 HOH HOH C . K 3 HOH 9 209 23 HOH HOH C . K 3 HOH 10 210 25 HOH HOH C . K 3 HOH 11 211 15 HOH HOH C . K 3 HOH 12 212 35 HOH HOH C . K 3 HOH 13 213 6 HOH HOH C . K 3 HOH 14 214 79 HOH HOH C . K 3 HOH 15 215 128 HOH HOH C . K 3 HOH 16 216 14 HOH HOH C . K 3 HOH 17 217 7 HOH HOH C . K 3 HOH 18 218 5 HOH HOH C . K 3 HOH 19 219 34 HOH HOH C . K 3 HOH 20 220 30 HOH HOH C . K 3 HOH 21 221 24 HOH HOH C . K 3 HOH 22 222 65 HOH HOH C . K 3 HOH 23 223 39 HOH HOH C . K 3 HOH 24 224 112 HOH HOH C . K 3 HOH 25 225 67 HOH HOH C . K 3 HOH 26 226 46 HOH HOH C . K 3 HOH 27 227 31 HOH HOH C . K 3 HOH 28 228 110 HOH HOH C . K 3 HOH 29 229 21 HOH HOH C . K 3 HOH 30 230 66 HOH HOH C . K 3 HOH 31 231 61 HOH HOH C . K 3 HOH 32 232 127 HOH HOH C . K 3 HOH 33 233 105 HOH HOH C . K 3 HOH 34 234 119 HOH HOH C . K 3 HOH 35 235 89 HOH HOH C . K 3 HOH 36 236 122 HOH HOH C . K 3 HOH 37 237 132 HOH HOH C . K 3 HOH 38 238 75 HOH HOH C . K 3 HOH 39 239 91 HOH HOH C . K 3 HOH 40 240 106 HOH HOH C . K 3 HOH 41 241 117 HOH HOH C . K 3 HOH 42 242 137 HOH HOH C . K 3 HOH 43 243 129 HOH HOH C . K 3 HOH 44 244 94 HOH HOH C . K 3 HOH 45 245 104 HOH HOH C . K 3 HOH 46 246 120 HOH HOH C . L 3 HOH 1 201 54 HOH HOH D . L 3 HOH 2 202 108 HOH HOH D . L 3 HOH 3 203 92 HOH HOH D . L 3 HOH 4 204 88 HOH HOH D . L 3 HOH 5 205 121 HOH HOH D . L 3 HOH 6 206 109 HOH HOH D . L 3 HOH 7 207 29 HOH HOH D . L 3 HOH 8 208 72 HOH HOH D . L 3 HOH 9 209 60 HOH HOH D . L 3 HOH 10 210 48 HOH HOH D . L 3 HOH 11 211 134 HOH HOH D . L 3 HOH 12 212 85 HOH HOH D . L 3 HOH 13 213 9 HOH HOH D . L 3 HOH 14 214 135 HOH HOH D . L 3 HOH 15 215 50 HOH HOH D . L 3 HOH 16 216 19 HOH HOH D . L 3 HOH 17 217 81 HOH HOH D . L 3 HOH 18 218 68 HOH HOH D . L 3 HOH 19 219 84 HOH HOH D . L 3 HOH 20 220 55 HOH HOH D . L 3 HOH 21 221 113 HOH HOH D . L 3 HOH 22 222 59 HOH HOH D . L 3 HOH 23 223 96 HOH HOH D . L 3 HOH 24 224 116 HOH HOH D . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.13_2998: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 129.72 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6QIR _cell.details ? _cell.formula_units_Z ? _cell.length_a 77.024 _cell.length_a_esd ? _cell.length_b 46.747 _cell.length_b_esd ? _cell.length_c 54.811 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6QIR _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.70 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 66.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '10mM MgCl2 and 1M Li2SO4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-05-27 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9171 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9171 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_synchrotron_site BESSY # _reflns.B_iso_Wilson_estimate 31.86 _reflns.entry_id 6QIR _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.53 _reflns.d_resolution_low 42.158 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 43700 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.5 _reflns.pdbx_Rmerge_I_obs 0.041 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.99 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.53 _reflns_shell.d_res_low 1.62 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 6954 _reflns_shell.percent_possible_all 96.2 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.241 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.872 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6QIR _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.531 _refine.ls_d_res_low 42.158 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 22183 _refine.ls_number_reflns_R_free 1043 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.66 _refine.ls_percent_reflns_R_free 4.70 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1793 _refine.ls_R_factor_R_free 0.2327 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1768 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6QIQ _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 0.80 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.50 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 33.61 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.34 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 680 _refine_hist.pdbx_number_atoms_ligand 148 _refine_hist.number_atoms_solvent 139 _refine_hist.number_atoms_total 967 _refine_hist.d_res_high 1.531 _refine_hist.d_res_low 42.158 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 924 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.456 ? 1400 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 10.346 ? 532 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.064 ? 156 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 ? 180 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5313 1.6121 . . 148 2975 95.00 . . . 0.5101 . 0.4479 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6121 1.7131 . . 147 2876 95.00 . . . 0.3223 . 0.3023 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7131 1.8453 . . 176 2989 98.00 . . . 0.2684 . 0.2196 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8453 2.0310 . . 164 3030 99.00 . . . 0.2541 . 0.1830 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0310 2.3249 . . 124 3090 100.00 . . . 0.2662 . 0.1680 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3249 2.9290 . . 126 3097 99.00 . . . 0.2704 . 0.2140 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9290 42.1741 . . 158 3083 98.00 . . . 0.1936 . 0.1420 . . . . . . . . . . # _struct.entry_id 6QIR _struct.title 'Crystal structure of CAG repeats with synthetic CMBL3a compound (model I)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6QIR _struct_keywords.text 'CAG repeats, CMBL, RNA complex with ligand, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6QIR _struct_ref.pdbx_db_accession 6QIR _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6QIR A 1 ? 8 ? 6QIR 1 ? 8 ? 1 8 2 1 6QIR B 1 ? 8 ? 6QIR 1 ? 8 ? 1 8 3 1 6QIR C 1 ? 8 ? 6QIR 1 ? 8 ? 1 8 4 1 6QIR D 1 ? 8 ? 6QIR 1 ? 8 ? 1 8 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,I,J 2 1 C,D,G,H,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 2 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 2 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 2 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B G 4 N1 ? ? ? 1_555 C G 4 O6 ? ? B G 4 C G 4 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog14 hydrog ? ? B G 4 O6 ? ? ? 1_555 C G 4 N1 ? ? B G 4 C G 4 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog15 hydrog ? ? B C 5 N4 ? ? ? 1_555 C C 5 O2 ? ? B C 5 C C 5 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog16 hydrog ? ? B C 5 O2 ? ? ? 1_555 C C 5 N4 ? ? B C 5 C C 5 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog17 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 8 N3 ? ? C G 1 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 8 O2 ? ? C G 1 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 8 N4 ? ? C G 1 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C C 2 N3 ? ? ? 1_555 D G 7 N1 ? ? C C 2 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C C 2 N4 ? ? ? 1_555 D G 7 O6 ? ? C C 2 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C C 2 O2 ? ? ? 1_555 D G 7 N2 ? ? C C 2 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C G 7 N1 ? ? ? 1_555 D C 2 N3 ? ? C G 7 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C G 7 N2 ? ? ? 1_555 D C 2 O2 ? ? C G 7 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C G 7 O6 ? ? ? 1_555 D C 2 N4 ? ? C G 7 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C C 8 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 8 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C C 8 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 8 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C C 8 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 8 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A J48 101 ? 8 'binding site for residue J48 A 101' AC2 Software A J48 102 ? 8 'binding site for residue J48 A 102' AC3 Software C J48 101 ? 8 'binding site for residue J48 C 101' AC4 Software D J48 101 ? 8 'binding site for residue J48 D 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 C A 2 ? C A 2 . ? 1_555 ? 2 AC1 8 A A 3 ? A A 3 . ? 1_555 ? 3 AC1 8 J48 F . ? J48 A 102 . ? 1_555 ? 4 AC1 8 HOH I . ? HOH A 208 . ? 1_555 ? 5 AC1 8 HOH I . ? HOH A 209 . ? 1_555 ? 6 AC1 8 A B 3 ? A B 3 . ? 1_555 ? 7 AC1 8 A B 6 ? A B 6 . ? 1_555 ? 8 AC1 8 G B 7 ? G B 7 . ? 1_555 ? 9 AC2 8 A A 3 ? A A 3 . ? 1_555 ? 10 AC2 8 A A 6 ? A A 6 . ? 1_555 ? 11 AC2 8 G A 7 ? G A 7 . ? 1_555 ? 12 AC2 8 J48 E . ? J48 A 101 . ? 1_555 ? 13 AC2 8 HOH I . ? HOH A 215 . ? 1_555 ? 14 AC2 8 HOH I . ? HOH A 217 . ? 1_555 ? 15 AC2 8 C B 2 ? C B 2 . ? 1_555 ? 16 AC2 8 A B 3 ? A B 3 . ? 1_555 ? 17 AC3 8 A C 3 ? A C 3 . ? 1_555 ? 18 AC3 8 A C 6 ? A C 6 . ? 1_555 ? 19 AC3 8 G C 7 ? G C 7 . ? 1_555 ? 20 AC3 8 HOH K . ? HOH C 220 . ? 1_555 ? 21 AC3 8 HOH K . ? HOH C 227 . ? 1_555 ? 22 AC3 8 C D 2 ? C D 2 . ? 1_555 ? 23 AC3 8 A D 3 ? A D 3 . ? 1_555 ? 24 AC3 8 J48 H . ? J48 D 101 . ? 1_555 ? 25 AC4 8 C C 2 ? C C 2 . ? 1_555 ? 26 AC4 8 A C 3 ? A C 3 . ? 1_555 ? 27 AC4 8 J48 G . ? J48 C 101 . ? 1_555 ? 28 AC4 8 A D 3 ? A D 3 . ? 1_555 ? 29 AC4 8 C D 5 ? C D 5 . ? 1_555 ? 30 AC4 8 A D 6 ? A D 6 . ? 1_555 ? 31 AC4 8 G D 7 ? G D 7 . ? 1_555 ? 32 AC4 8 HOH L . ? HOH D 211 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 B C 5 ? ? N1 B C 5 ? ? C2 B C 5 ? ? 123.25 120.30 2.95 0.40 N 2 1 C2 B G 7 ? ? N3 B G 7 ? ? C4 B G 7 ? ? 115.19 111.90 3.29 0.50 N 3 1 N9 C G 4 ? ? C4 C G 4 ? ? C5 C G 4 ? ? 108.02 105.40 2.62 0.40 N 4 1 C5 C C 5 ? ? C6 C C 5 ? ? N1 C C 5 ? ? 117.91 121.00 -3.09 0.50 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 J48 C8 C Y N 114 J48 C9 C Y N 115 J48 C10 C Y N 116 J48 C11 C Y N 117 J48 C12 C Y N 118 J48 C13 C Y N 119 J48 N1 N Y N 120 J48 C6 C Y N 121 J48 C3 C Y N 122 J48 C5 C Y N 123 J48 C4 C Y N 124 J48 C2 C Y N 125 J48 C15 C Y N 126 J48 C16 C Y N 127 J48 C17 C Y N 128 J48 C18 C Y N 129 J48 C19 C Y N 130 J48 C22 C N N 131 J48 C26 C N N 132 J48 C29 C N N 133 J48 C30 C N N 134 J48 C31 C N N 135 J48 C32 C N N 136 J48 C33 C N N 137 J48 C34 C N N 138 J48 C36 C N N 139 J48 C37 C N N 140 J48 N14 N Y N 141 J48 N20 N Y N 142 J48 N21 N N N 143 J48 N25 N N N 144 J48 N35 N N N 145 J48 N7 N Y N 146 J48 O23 O N N 147 J48 O24 O N N 148 J48 O27 O N N 149 J48 O28 O N N 150 J48 H1 H N N 151 J48 H2 H N N 152 J48 H3 H N N 153 J48 H4 H N N 154 J48 H5 H N N 155 J48 H6 H N N 156 J48 H7 H N N 157 J48 H8 H N N 158 J48 H9 H N N 159 J48 H10 H N N 160 J48 H11 H N N 161 J48 H12 H N N 162 J48 H13 H N N 163 J48 H14 H N N 164 J48 H15 H N N 165 J48 H16 H N N 166 J48 H17 H N N 167 J48 H18 H N N 168 J48 H19 H N N 169 J48 H20 H N N 170 J48 H21 H N N 171 J48 H22 H N N 172 J48 H23 H N N 173 J48 H24 H N N 174 J48 H25 H N N 175 J48 H26 H N N 176 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 J48 C17 C18 doub Y N 118 J48 C17 C12 sing Y N 119 J48 O28 C26 doub N N 120 J48 C18 C19 sing Y N 121 J48 C11 C12 doub Y N 122 J48 C11 C16 sing Y N 123 J48 C12 C13 sing Y N 124 J48 C26 N25 sing N N 125 J48 C26 O27 sing N N 126 J48 C31 C37 sing N N 127 J48 C31 O27 sing N N 128 J48 C19 N25 sing N N 129 J48 C19 N20 doub Y N 130 J48 C16 C15 doub Y N 131 J48 C37 C33 sing N N 132 J48 C13 N20 sing Y N 133 J48 C13 N14 doub Y N 134 J48 C15 N14 sing Y N 135 J48 C15 C36 sing N N 136 J48 C33 C32 doub N E 137 J48 C32 C30 sing N N 138 J48 C36 N35 sing N N 139 J48 N35 C34 sing N N 140 J48 C30 C29 sing N N 141 J48 O23 C29 sing N N 142 J48 O23 C22 sing N N 143 J48 C34 C6 sing N N 144 J48 N21 C22 sing N N 145 J48 N21 C8 sing N N 146 J48 N1 C6 doub Y N 147 J48 N1 C2 sing Y N 148 J48 N7 C8 doub Y N 149 J48 N7 C2 sing Y N 150 J48 C22 O24 doub N N 151 J48 C6 C5 sing Y N 152 J48 C8 C9 sing Y N 153 J48 C2 C3 doub Y N 154 J48 C5 C4 doub Y N 155 J48 C9 C10 doub Y N 156 J48 C3 C4 sing Y N 157 J48 C3 C10 sing Y N 158 J48 C9 H1 sing N N 159 J48 C10 H2 sing N N 160 J48 C11 H3 sing N N 161 J48 C5 H4 sing N N 162 J48 C4 H5 sing N N 163 J48 C16 H6 sing N N 164 J48 C17 H7 sing N N 165 J48 C18 H8 sing N N 166 J48 C29 H9 sing N N 167 J48 C29 H10 sing N N 168 J48 C30 H11 sing N N 169 J48 C30 H12 sing N N 170 J48 C31 H13 sing N N 171 J48 C31 H14 sing N N 172 J48 C32 H15 sing N N 173 J48 C33 H16 sing N N 174 J48 C34 H17 sing N N 175 J48 C34 H18 sing N N 176 J48 C36 H19 sing N N 177 J48 C36 H20 sing N N 178 J48 C37 H21 sing N N 179 J48 C37 H22 sing N N 180 J48 N21 H23 sing N N 181 J48 N25 H24 sing N N 182 J48 N35 H25 sing N N 183 J48 N35 H26 sing N N 184 # _ndb_struct_conf_na.entry_id 6QIR _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 8 1_555 -0.333 -0.047 -0.090 -9.914 -12.653 0.642 1 A_G1:C8_B A 1 ? B 8 ? 19 1 1 A C 2 1_555 B G 7 1_555 0.229 -0.202 -0.122 1.154 -17.040 -0.325 2 A_C2:G7_B A 2 ? B 7 ? 19 1 1 A G 7 1_555 B C 2 1_555 -0.243 -0.120 -0.018 -0.754 -10.181 0.669 3 A_G7:C2_B A 7 ? B 2 ? 19 1 1 A C 8 1_555 B G 1 1_555 0.284 -0.174 -0.070 5.556 -5.784 -0.009 4 A_C8:G1_B A 8 ? B 1 ? 19 1 1 B G 4 1_555 C G 4 1_555 -1.149 -1.597 0.044 5.984 -0.158 179.321 5 B_G4:G4_C B 4 ? C 4 ? 3 2 1 B C 5 1_555 C C 5 1_555 -1.910 -1.416 0.019 -3.262 -16.561 -178.996 6 B_C5:C5_C B 5 ? C 5 ? 15 2 1 C G 1 1_555 D C 8 1_555 -0.240 -0.034 0.238 -3.755 -10.914 0.986 7 C_G1:C8_D C 1 ? D 8 ? 19 1 1 C C 2 1_555 D G 7 1_555 0.296 -0.048 0.232 -1.302 -14.048 3.151 8 C_C2:G7_D C 2 ? D 7 ? 19 1 1 C G 7 1_555 D C 2 1_555 -0.288 -0.125 0.109 3.614 -15.122 0.987 9 C_G7:C2_D C 7 ? D 2 ? 19 1 1 C C 8 1_555 D G 1 1_555 0.330 -0.188 -0.089 9.008 -8.181 -0.690 10 C_C8:G1_D C 8 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 8 1_555 A C 2 1_555 B G 7 1_555 -0.663 -1.513 2.984 -0.942 2.969 35.301 -2.877 0.965 2.867 4.884 1.550 35.433 1 AA_G1C2:G7C8_BB A 1 ? B 8 ? A 2 ? B 7 ? 1 A G 7 1_555 B C 2 1_555 A C 8 1_555 B G 1 1_555 0.266 -1.832 3.118 1.264 2.768 33.548 -3.582 -0.266 2.970 4.783 -2.184 33.681 2 AA_G7C8:G1C2_BB A 7 ? B 2 ? A 8 ? B 1 ? 1 B G 4 1_555 C G 4 1_555 B C 5 1_555 C C 5 1_555 0.025 -0.036 2.826 0.208 -0.174 -143.117 0.020 0.014 2.826 0.092 0.110 -143.117 3 BB_G4C5:C5G4_CC B 4 ? C 4 ? B 5 ? C 5 ? 1 C G 1 1_555 D C 8 1_555 C C 2 1_555 D G 7 1_555 -0.421 -1.651 3.240 -1.397 3.313 34.022 -3.314 0.501 3.085 5.642 2.379 34.206 4 CC_G1C2:G7C8_DD C 1 ? D 8 ? C 2 ? D 7 ? 1 C G 7 1_555 D C 2 1_555 C C 8 1_555 D G 1 1_555 0.302 -1.414 3.182 0.355 4.590 34.859 -2.990 -0.449 2.981 7.620 -0.589 35.152 5 CC_G7C8:G1C2_DD C 7 ? D 2 ? C 8 ? D 1 ? # _pdbx_audit_support.funding_organization ? _pdbx_audit_support.country Poland _pdbx_audit_support.grant_number 'NCN 2017/26/E/NZ1/00950' _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6QIQ _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6QIR _atom_sites.fract_transf_matrix[1][1] 0.012983 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010787 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021392 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023720 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_