HEADER RNA 21-JAN-19 6QIS TITLE CRYSTAL STRUCTURE OF CAG REPEATS WITH SYNTHETIC CMBL3A COMPOUND (MODEL TITLE 2 II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3'); COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS CAG REPEATS, CMBL, RNA COMPLEX WITH LIGAND, RNA EXPDTA X-RAY DIFFRACTION AUTHOR A.KILISZEK,L.BLASZCZYK,W.RYPNIEWSKI,K.NAKATANI REVDAT 3 20-NOV-19 6QIS 1 JRNL REVDAT 2 09-OCT-19 6QIS 1 JRNL REVDAT 1 25-SEP-19 6QIS 0 JRNL AUTH S.MUKHERJEE,L.BLASZCZYK,W.RYPNIEWSKI,C.FALSCHLUNGER, JRNL AUTH 2 R.MICURA,A.MURATA,C.DOHNO,K.NAKATANI,A.KILISZEK JRNL TITL STRUCTURAL INSIGHTS INTO SYNTHETIC LIGANDS TARGETING A-A JRNL TITL 2 PAIRS IN DISEASE-RELATED CAG RNA REPEATS. JRNL REF NUCLEIC ACIDS RES. V. 47 10906 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31566242 JRNL DOI 10.1093/NAR/GKZ832 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 19465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7400 - 3.8100 0.98 2770 145 0.1995 0.2385 REMARK 3 2 3.8100 - 3.0300 0.98 2641 139 0.2030 0.2383 REMARK 3 3 3.0300 - 2.6400 0.99 2650 138 0.2747 0.3107 REMARK 3 4 2.6400 - 2.4000 0.99 2625 138 0.2902 0.3166 REMARK 3 5 2.4000 - 2.2300 0.99 2609 137 0.2957 0.3690 REMARK 3 6 2.2300 - 2.1000 0.99 2625 138 0.3128 0.3193 REMARK 3 7 2.1000 - 1.9900 0.99 2576 134 0.3217 0.3715 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.261 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.975 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2029 REMARK 3 ANGLE : 1.187 3090 REMARK 3 CHIRALITY : 0.050 347 REMARK 3 PLANARITY : 0.006 367 REMARK 3 DIHEDRAL : 12.023 1161 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9334 7.1456 -26.4505 REMARK 3 T TENSOR REMARK 3 T11: 0.3203 T22: 0.4393 REMARK 3 T33: 0.4891 T12: 0.1267 REMARK 3 T13: 0.0395 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 6.2527 L22: 5.7250 REMARK 3 L33: 6.6162 L12: -2.1793 REMARK 3 L13: -4.9396 L23: 2.9534 REMARK 3 S TENSOR REMARK 3 S11: -0.1309 S12: 0.5845 S13: -1.3230 REMARK 3 S21: 0.2560 S22: -0.4377 S23: 0.0586 REMARK 3 S31: 0.5992 S32: 0.5126 S33: 0.5704 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2779 6.7794 -18.0441 REMARK 3 T TENSOR REMARK 3 T11: 0.7288 T22: 0.6080 REMARK 3 T33: 0.5436 T12: 0.1342 REMARK 3 T13: 0.1863 T23: 0.0971 REMARK 3 L TENSOR REMARK 3 L11: 1.5950 L22: 1.3365 REMARK 3 L33: 2.6782 L12: -0.3582 REMARK 3 L13: 0.2825 L23: 0.2150 REMARK 3 S TENSOR REMARK 3 S11: -0.7205 S12: 0.0346 S13: -0.3107 REMARK 3 S21: 1.6422 S22: 0.6556 S23: 0.5769 REMARK 3 S31: 0.4135 S32: -1.6630 S33: 0.0206 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0596 17.9992 -21.6963 REMARK 3 T TENSOR REMARK 3 T11: 0.3854 T22: 0.3679 REMARK 3 T33: 0.4111 T12: 0.0173 REMARK 3 T13: 0.0685 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 9.4862 L22: 8.0138 REMARK 3 L33: 4.1085 L12: -4.2294 REMARK 3 L13: 1.5639 L23: -4.0261 REMARK 3 S TENSOR REMARK 3 S11: -0.9164 S12: -0.2685 S13: -0.6469 REMARK 3 S21: 0.7623 S22: 1.0518 S23: 1.0276 REMARK 3 S31: 0.3830 S32: -1.3412 S33: -0.2058 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6466 18.1736 -29.9885 REMARK 3 T TENSOR REMARK 3 T11: 0.2661 T22: 0.4513 REMARK 3 T33: 0.3567 T12: -0.0689 REMARK 3 T13: 0.0495 T23: -0.0498 REMARK 3 L TENSOR REMARK 3 L11: 5.1992 L22: 4.2582 REMARK 3 L33: 2.8918 L12: 1.2959 REMARK 3 L13: 0.5709 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: -0.2288 S12: 0.5707 S13: -0.0856 REMARK 3 S21: -0.4556 S22: 0.1398 S23: -0.3485 REMARK 3 S31: -0.0105 S32: -0.1348 S33: 0.0362 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7217 21.9647 -20.5125 REMARK 3 T TENSOR REMARK 3 T11: 0.4404 T22: 0.4204 REMARK 3 T33: 0.5748 T12: 0.0116 REMARK 3 T13: 0.0111 T23: 0.0743 REMARK 3 L TENSOR REMARK 3 L11: 2.0989 L22: 6.8073 REMARK 3 L33: 0.0510 L12: -3.4444 REMARK 3 L13: 0.0450 L23: -0.3342 REMARK 3 S TENSOR REMARK 3 S11: -0.3935 S12: -0.1974 S13: -0.1705 REMARK 3 S21: 0.7184 S22: 0.4375 S23: 1.1205 REMARK 3 S31: 0.1644 S32: 0.1112 S33: -0.0432 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9975 11.5955 -19.2644 REMARK 3 T TENSOR REMARK 3 T11: 0.3901 T22: 0.4584 REMARK 3 T33: 0.4206 T12: 0.1314 REMARK 3 T13: 0.0471 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 4.4038 L22: 3.2997 REMARK 3 L33: 6.4801 L12: 2.7766 REMARK 3 L13: 4.8933 L23: 1.8143 REMARK 3 S TENSOR REMARK 3 S11: -0.6575 S12: -0.0683 S13: 0.9463 REMARK 3 S21: 0.5035 S22: 0.9612 S23: -0.1319 REMARK 3 S31: -0.1877 S32: 0.8873 S33: -0.1539 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3439 -17.8568 -2.4646 REMARK 3 T TENSOR REMARK 3 T11: 0.5165 T22: 0.4924 REMARK 3 T33: 0.6594 T12: -0.1755 REMARK 3 T13: 0.0690 T23: -0.0525 REMARK 3 L TENSOR REMARK 3 L11: 8.4044 L22: 5.4535 REMARK 3 L33: 8.9029 L12: -0.1044 REMARK 3 L13: 2.4524 L23: -6.6943 REMARK 3 S TENSOR REMARK 3 S11: 0.3481 S12: -2.2426 S13: -1.5352 REMARK 3 S21: -0.6248 S22: -0.6893 S23: -0.0963 REMARK 3 S31: 1.4151 S32: -0.3880 S33: 0.3431 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 4 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9804 -17.9959 -11.6806 REMARK 3 T TENSOR REMARK 3 T11: 1.0247 T22: 0.4761 REMARK 3 T33: 0.6522 T12: -0.0374 REMARK 3 T13: 0.1508 T23: -0.0810 REMARK 3 L TENSOR REMARK 3 L11: 8.6145 L22: 1.6557 REMARK 3 L33: 2.6456 L12: -1.7221 REMARK 3 L13: 0.7574 L23: -1.9912 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: 0.5354 S13: -0.0455 REMARK 3 S21: 0.4619 S22: 0.8559 S23: -0.1237 REMARK 3 S31: 1.9351 S32: 0.9813 S33: -0.6776 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 7 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8164 -7.9739 -7.8640 REMARK 3 T TENSOR REMARK 3 T11: 0.3411 T22: 0.5130 REMARK 3 T33: 0.4723 T12: 0.0323 REMARK 3 T13: 0.0768 T23: -0.0499 REMARK 3 L TENSOR REMARK 3 L11: 3.6666 L22: 5.3453 REMARK 3 L33: 4.6307 L12: -1.3042 REMARK 3 L13: -3.8104 L23: -0.4723 REMARK 3 S TENSOR REMARK 3 S11: -0.1088 S12: -0.5117 S13: -1.2821 REMARK 3 S21: 0.1303 S22: 0.3158 S23: -0.4194 REMARK 3 S31: 0.5385 S32: 1.7987 S33: -0.1591 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3404 -7.6861 0.4571 REMARK 3 T TENSOR REMARK 3 T11: 0.4087 T22: 0.5341 REMARK 3 T33: 0.2935 T12: 0.1016 REMARK 3 T13: 0.0897 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 5.7080 L22: 5.6511 REMARK 3 L33: 3.8193 L12: -2.4732 REMARK 3 L13: 4.6289 L23: -1.4745 REMARK 3 S TENSOR REMARK 3 S11: -0.4149 S12: -1.5529 S13: -0.5036 REMARK 3 S21: 0.7135 S22: 0.6666 S23: -0.2161 REMARK 3 S31: -0.3499 S32: -0.2118 S33: -0.2957 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 4 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9259 -3.7223 -9.2964 REMARK 3 T TENSOR REMARK 3 T11: 0.4090 T22: 0.3855 REMARK 3 T33: 0.3542 T12: -0.0410 REMARK 3 T13: 0.0818 T23: -0.0727 REMARK 3 L TENSOR REMARK 3 L11: 2.9023 L22: 3.3509 REMARK 3 L33: 2.1089 L12: 2.8708 REMARK 3 L13: 1.5450 L23: 2.3391 REMARK 3 S TENSOR REMARK 3 S11: -0.3585 S12: 0.5653 S13: -0.5075 REMARK 3 S21: -0.1342 S22: 0.4424 S23: -0.4295 REMARK 3 S31: 0.5277 S32: -0.1957 S33: 0.0322 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 7 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9459 -13.8828 -10.2924 REMARK 3 T TENSOR REMARK 3 T11: 0.5360 T22: 0.6309 REMARK 3 T33: 0.5489 T12: -0.1926 REMARK 3 T13: 0.1073 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 4.0027 L22: 3.3807 REMARK 3 L33: 5.8348 L12: -2.1908 REMARK 3 L13: 3.9865 L23: -0.1980 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: -0.2506 S13: 1.0285 REMARK 3 S21: -0.2954 S22: 0.2994 S23: 0.4987 REMARK 3 S31: 1.0201 S32: -0.7254 S33: -0.3289 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7210 -7.2319 -27.1109 REMARK 3 T TENSOR REMARK 3 T11: 0.2647 T22: 0.3394 REMARK 3 T33: 0.7351 T12: -0.0098 REMARK 3 T13: -0.1534 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 7.7282 L22: 0.8402 REMARK 3 L33: 5.2936 L12: -2.2956 REMARK 3 L13: 0.1106 L23: -0.9048 REMARK 3 S TENSOR REMARK 3 S11: -0.1233 S12: 0.3268 S13: 1.3483 REMARK 3 S21: 0.5224 S22: -0.2781 S23: -1.2586 REMARK 3 S31: -0.7966 S32: 0.0822 S33: 0.4039 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 4 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8987 -5.9468 -19.6722 REMARK 3 T TENSOR REMARK 3 T11: 0.5294 T22: 0.5327 REMARK 3 T33: 0.8789 T12: 0.0112 REMARK 3 T13: -0.0964 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 6.9298 L22: 3.8644 REMARK 3 L33: 6.1864 L12: 1.7228 REMARK 3 L13: 0.0051 L23: 4.6106 REMARK 3 S TENSOR REMARK 3 S11: -1.0189 S12: -0.2031 S13: 1.0121 REMARK 3 S21: -0.9918 S22: 0.8812 S23: 3.1304 REMARK 3 S31: -0.8933 S32: 0.6935 S33: 0.0277 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 7 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2301 -17.8808 -22.5948 REMARK 3 T TENSOR REMARK 3 T11: 0.2972 T22: 0.3307 REMARK 3 T33: 0.4106 T12: -0.0048 REMARK 3 T13: -0.0005 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.8297 L22: 5.9365 REMARK 3 L33: 8.4296 L12: 1.2832 REMARK 3 L13: -0.5455 L23: 6.0198 REMARK 3 S TENSOR REMARK 3 S11: -0.5945 S12: -0.3954 S13: 0.5944 REMARK 3 S21: 0.0174 S22: 0.7961 S23: -0.2013 REMARK 3 S31: -0.5476 S32: 1.3414 S33: -0.2426 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2360 -18.3515 -30.4993 REMARK 3 T TENSOR REMARK 3 T11: 0.2642 T22: 0.4502 REMARK 3 T33: 0.2768 T12: -0.0568 REMARK 3 T13: -0.0956 T23: 0.0984 REMARK 3 L TENSOR REMARK 3 L11: 5.9705 L22: 2.1312 REMARK 3 L33: 4.1457 L12: 0.8423 REMARK 3 L13: -3.4218 L23: -0.1850 REMARK 3 S TENSOR REMARK 3 S11: -0.4021 S12: 0.7900 S13: 0.8134 REMARK 3 S21: -0.1790 S22: 0.0323 S23: 0.1890 REMARK 3 S31: -0.1852 S32: -0.2403 S33: 0.4365 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 4 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7813 -21.7098 -20.4921 REMARK 3 T TENSOR REMARK 3 T11: 0.3950 T22: 0.3488 REMARK 3 T33: 0.3641 T12: 0.0304 REMARK 3 T13: -0.0750 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 5.5311 L22: 8.3963 REMARK 3 L33: 7.4739 L12: -1.9425 REMARK 3 L13: -1.1746 L23: 3.1744 REMARK 3 S TENSOR REMARK 3 S11: -0.3945 S12: -0.1266 S13: 0.7947 REMARK 3 S21: 0.7526 S22: 0.3433 S23: -0.6767 REMARK 3 S31: 0.7154 S32: -0.4099 S33: 0.0670 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 7 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4135 -11.7132 -19.6463 REMARK 3 T TENSOR REMARK 3 T11: 0.4087 T22: 0.4476 REMARK 3 T33: 0.4775 T12: 0.1130 REMARK 3 T13: -0.0596 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 3.3804 L22: 4.9790 REMARK 3 L33: 3.2106 L12: 2.1488 REMARK 3 L13: -3.2085 L23: -1.2609 REMARK 3 S TENSOR REMARK 3 S11: -0.7257 S12: -1.0753 S13: -0.1232 REMARK 3 S21: 0.3336 S22: -0.4413 S23: -0.2278 REMARK 3 S31: -1.0407 S32: -0.4657 S33: 1.3292 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 1 THROUGH 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1088 18.5681 -2.4739 REMARK 3 T TENSOR REMARK 3 T11: 0.4651 T22: 0.4018 REMARK 3 T33: 0.4085 T12: -0.1078 REMARK 3 T13: -0.0466 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 2.5297 L22: 7.6144 REMARK 3 L33: 7.4522 L12: 0.6830 REMARK 3 L13: -2.0968 L23: 2.9475 REMARK 3 S TENSOR REMARK 3 S11: -0.5349 S12: 0.0494 S13: -0.3901 REMARK 3 S21: -0.9782 S22: 0.6979 S23: 1.0243 REMARK 3 S31: -0.8735 S32: 0.7957 S33: -0.2123 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 4 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3434 18.8230 -10.9177 REMARK 3 T TENSOR REMARK 3 T11: 0.9930 T22: 0.4708 REMARK 3 T33: 0.5828 T12: -0.0075 REMARK 3 T13: -0.1644 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 5.4817 L22: 5.8981 REMARK 3 L33: 6.8015 L12: 3.8713 REMARK 3 L13: -2.5935 L23: 2.3721 REMARK 3 S TENSOR REMARK 3 S11: -0.9974 S12: -0.0753 S13: -0.8836 REMARK 3 S21: 0.3925 S22: 0.1195 S23: -1.4048 REMARK 3 S31: -2.1934 S32: -1.4886 S33: 0.9511 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 7 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5546 7.5226 -7.3848 REMARK 3 T TENSOR REMARK 3 T11: 0.4328 T22: 0.3359 REMARK 3 T33: 0.2674 T12: 0.0204 REMARK 3 T13: 0.0340 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 7.2559 L22: 9.4584 REMARK 3 L33: 6.2630 L12: 3.7420 REMARK 3 L13: 4.7980 L23: 4.9723 REMARK 3 S TENSOR REMARK 3 S11: -0.9676 S12: -0.3163 S13: 0.3450 REMARK 3 S21: -0.2162 S22: 0.5584 S23: 0.2870 REMARK 3 S31: -0.3408 S32: -0.3717 S33: 0.4364 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7352 7.1678 0.6194 REMARK 3 T TENSOR REMARK 3 T11: 0.3402 T22: 0.4285 REMARK 3 T33: 0.3598 T12: 0.0152 REMARK 3 T13: -0.0390 T23: -0.0612 REMARK 3 L TENSOR REMARK 3 L11: 3.8949 L22: 9.2874 REMARK 3 L33: 7.7201 L12: 3.6120 REMARK 3 L13: 0.5040 L23: -6.2220 REMARK 3 S TENSOR REMARK 3 S11: -0.4177 S12: -0.4721 S13: 0.2433 REMARK 3 S21: 0.2464 S22: -0.2312 S23: -0.5234 REMARK 3 S31: -0.3441 S32: -0.0972 S33: 0.8101 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 4 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3993 3.5348 -8.9655 REMARK 3 T TENSOR REMARK 3 T11: 0.6526 T22: 0.5950 REMARK 3 T33: 0.8715 T12: -0.0435 REMARK 3 T13: 0.1902 T23: 0.0781 REMARK 3 L TENSOR REMARK 3 L11: 6.1114 L22: 4.3353 REMARK 3 L33: 8.4391 L12: 2.6952 REMARK 3 L13: 2.7221 L23: 5.9808 REMARK 3 S TENSOR REMARK 3 S11: -1.6858 S12: 0.8532 S13: -0.0837 REMARK 3 S21: -0.1834 S22: 1.3741 S23: 0.5237 REMARK 3 S31: 1.3890 S32: 1.0271 S33: 0.2502 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 7 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3942 14.1998 -9.7633 REMARK 3 T TENSOR REMARK 3 T11: 0.4746 T22: 0.4571 REMARK 3 T33: 0.2817 T12: -0.1042 REMARK 3 T13: -0.0262 T23: -0.0766 REMARK 3 L TENSOR REMARK 3 L11: 6.5402 L22: 4.4191 REMARK 3 L33: 4.1876 L12: -3.3562 REMARK 3 L13: -4.5380 L23: 0.6574 REMARK 3 S TENSOR REMARK 3 S11: -1.3718 S12: -0.1177 S13: -0.5246 REMARK 3 S21: -0.8393 S22: 0.6046 S23: 0.5091 REMARK 3 S31: 0.1033 S32: 1.4252 S33: 0.6768 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QIS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100164. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.917143 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19670 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 42.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.94000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM MGCL2, 1M LI2SO4, PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.90500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.23150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.57700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.23150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.90500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.57700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 207 O HOH B 209 2.02 REMARK 500 O HOH E 223 O HOH F 108 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C F 5 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J48 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J48 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J48 C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J48 C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J48 E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J48 E 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J48 G 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J48 H 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6QIQ RELATED DB: PDB REMARK 900 RELATED ID: 6QIR RELATED DB: PDB DBREF 6QIS A 1 8 PDB 6QIS 6QIS 1 8 DBREF 6QIS B 1 8 PDB 6QIS 6QIS 1 8 DBREF 6QIS C 1 8 PDB 6QIS 6QIS 1 8 DBREF 6QIS D 1 8 PDB 6QIS 6QIS 1 8 DBREF 6QIS E 1 8 PDB 6QIS 6QIS 1 8 DBREF 6QIS F 1 8 PDB 6QIS 6QIS 1 8 DBREF 6QIS G 1 8 PDB 6QIS 6QIS 1 8 DBREF 6QIS H 1 8 PDB 6QIS 6QIS 1 8 SEQRES 1 A 8 G C A G C A G C SEQRES 1 B 8 G C A G C A G C SEQRES 1 C 8 G C A G C A G C SEQRES 1 D 8 G C A G C A G C SEQRES 1 E 8 G C A G C A G C SEQRES 1 F 8 G C A G C A G C SEQRES 1 G 8 G C A G C A G C SEQRES 1 H 8 G C A G C A G C HET J48 A 101 37 HET J48 B 101 37 HET J48 C 101 37 HET J48 C 102 37 HET SO4 C 103 5 HET J48 E 101 37 HET J48 E 102 38 HET J48 G 101 37 HET J48 H 101 37 HETNAM J48 CMBL3A HETNAM SO4 SULFATE ION FORMUL 9 J48 8(C26 H26 N7 O4 1+) FORMUL 13 SO4 O4 S 2- FORMUL 18 HOH *126(H2 O) SITE 1 AC1 10 A A 3 C A 5 A A 6 G A 7 SITE 2 AC1 10 HOH A 201 HOH A 205 C B 2 A B 3 SITE 3 AC1 10 J48 B 101 G F 4 SITE 1 AC2 8 C A 2 A A 3 J48 A 101 A B 3 SITE 2 AC2 8 A B 6 G B 7 HOH B 209 A H 6 SITE 1 AC3 9 C C 2 A C 3 J48 C 102 HOH C 208 SITE 2 AC3 9 A D 3 A D 6 G D 7 HOH D 105 SITE 3 AC3 9 A F 6 SITE 1 AC4 9 A C 3 C C 5 A C 6 G C 7 SITE 2 AC4 9 J48 C 101 HOH C 201 C D 2 A D 3 SITE 3 AC4 9 G H 4 SITE 1 AC5 4 G B 4 G C 4 C C 5 J48 E 102 SITE 1 AC6 7 C E 2 A E 3 J48 E 102 HOH E 215 SITE 2 AC6 7 A F 3 A F 6 G F 7 SITE 1 AC7 12 G B 4 G C 4 SO4 C 103 A E 3 SITE 2 AC7 12 A E 6 G E 7 J48 E 101 HOH E 217 SITE 3 AC7 12 HOH E 218 HOH E 220 C F 2 A F 3 SITE 1 AC8 8 G D 4 A G 3 C G 5 A G 6 SITE 2 AC8 8 G G 7 C H 2 A H 3 J48 H 101 SITE 1 AC9 7 C G 2 A G 3 J48 G 101 A H 3 SITE 2 AC9 7 A H 6 G H 7 HOH H 205 CRYST1 45.810 51.154 118.463 90.00 90.00 90.00 P 21 21 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021829 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019549 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008441 0.00000