data_6QIT # _entry.id 6QIT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.318 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6QIT WWPDB D_1292100179 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 6QIQ unspecified PDB . 6QIS unspecified PDB . 6QIR unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6QIT _pdbx_database_status.recvd_initial_deposition_date 2019-01-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kiliszek, A.' 1 ? 'Blaszczyk, L.' 2 ? 'Rypniewski, W.' 3 ? 'Nakatani, K.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 47 _citation.language ? _citation.page_first 10906 _citation.page_last 10913 _citation.title 'Structural insights into synthetic ligands targeting A-A pairs in disease-related CAG RNA repeats.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkz832 _citation.pdbx_database_id_PubMed 31566242 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mukherjee, S.' 1 ? primary 'Blaszczyk, L.' 2 ? primary 'Rypniewski, W.' 3 ? primary 'Falschlunger, C.' 4 ? primary 'Micura, R.' 5 ? primary 'Murata, A.' 6 ? primary 'Dohno, C.' 7 ? primary 'Nakatani, K.' 8 ? primary 'Kiliszek, A.' 9 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 104.06 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6QIT _cell.details ? _cell.formula_units_Z ? _cell.length_a 35.233 _cell.length_a_esd ? _cell.length_b 50.989 _cell.length_b_esd ? _cell.length_c 39.554 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3') ; 2564.617 4 ? ? ? ? 2 non-polymer syn CMBL3a 500.529 4 ? ? ? ? 3 water nat water 18.015 175 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCAGCAGC _entity_poly.pdbx_seq_one_letter_code_can GCAGCAGC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 A n 1 4 G n 1 5 C n 1 6 A n 1 7 G n 1 8 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6QIT _struct_ref.pdbx_db_accession 6QIT _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6QIT A 1 ? 8 ? 6QIT 1 ? 8 ? 1 8 2 1 6QIT B 1 ? 8 ? 6QIT 1 ? 8 ? 1 8 3 1 6QIT C 1 ? 8 ? 6QIT 1 ? 8 ? 1 8 4 1 6QIT D 1 ? 8 ? 6QIT 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 J48 non-polymer . CMBL3a ? 'C26 H26 N7 O4 1' 500.529 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6QIT _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.36 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 63.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20 mM magnesium acetate and 1.7 M ammonium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-11-23 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_synchrotron_site BESSY # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6QIT _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 29.3 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 20979 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.8 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.99 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.59 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.48 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3317 _reflns_shell.percent_possible_all 94.3 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.752 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.65 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6QIT _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.501 _refine.ls_d_res_low 29.300 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 20920 _refine.ls_number_reflns_R_free 1049 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.97 _refine.ls_percent_reflns_R_free 5.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1527 _refine.ls_R_factor_R_free 0.1952 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1504 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.10 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.17 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 680 _refine_hist.pdbx_number_atoms_ligand 148 _refine_hist.number_atoms_solvent 175 _refine_hist.number_atoms_total 1003 _refine_hist.d_res_high 1.501 _refine_hist.d_res_low 29.300 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 ? 957 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.484 ? 1453 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 11.336 ? 582 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.069 ? 164 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 ? 186 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5013 1.5804 . . 146 2764 94.00 . . . 0.2855 . 0.2162 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5804 1.6794 . . 149 2820 96.00 . . . 0.2480 . 0.1693 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6794 1.8091 . . 150 2841 96.00 . . . 0.2202 . 0.1555 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8091 1.9911 . . 149 2833 97.00 . . . 0.2356 . 0.1420 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9911 2.2791 . . 151 2872 97.00 . . . 0.1815 . 0.1520 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2791 2.8711 . . 153 2893 97.00 . . . 0.2365 . 0.1775 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8711 29.3057 . . 151 2848 95.00 . . . 0.1553 . 0.1304 . . . . . . . . . . # _struct.entry_id 6QIT _struct.title 'Crystal structure of CAG repeats with synthetic CMBL3b compound' _struct.pdbx_descriptor ;RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6QIT _struct_keywords.text 'CAG repeats, CMBL, RNA complex with ligand, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 2 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 2 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 2 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A C 5 N4 ? ? ? 1_555 D C 5 O2 ? ? A C 5 D C 5 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? hydrog8 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 8 N3 ? ? C G 1 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 8 O2 ? ? C G 1 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 8 N4 ? ? C G 1 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? C C 2 N3 ? ? ? 1_555 D G 7 N1 ? ? C C 2 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? C C 2 N4 ? ? ? 1_555 D G 7 O6 ? ? C C 2 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? C C 2 O2 ? ? ? 1_555 D G 7 N2 ? ? C C 2 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? C G 7 N1 ? ? ? 1_555 D C 2 N3 ? ? C G 7 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C G 7 N2 ? ? ? 1_555 D C 2 O2 ? ? C G 7 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C G 7 O6 ? ? ? 1_555 D C 2 N4 ? ? C G 7 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? C C 8 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 8 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? C C 8 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 8 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? C C 8 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 8 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A J48 101 ? 11 'binding site for residue J48 A 101' AC2 Software A J48 102 ? 10 'binding site for residue J48 A 102' AC3 Software C J48 101 ? 10 'binding site for residue J48 C 101' AC4 Software D J48 101 ? 11 'binding site for residue J48 D 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 A A 3 ? A A 3 . ? 1_555 ? 2 AC1 11 C A 5 ? C A 5 . ? 1_555 ? 3 AC1 11 A A 6 ? A A 6 . ? 1_555 ? 4 AC1 11 G A 7 ? G A 7 . ? 1_555 ? 5 AC1 11 J48 F . ? J48 A 102 . ? 1_555 ? 6 AC1 11 HOH I . ? HOH A 202 . ? 1_555 ? 7 AC1 11 HOH I . ? HOH A 206 . ? 1_555 ? 8 AC1 11 HOH I . ? HOH A 227 . ? 1_555 ? 9 AC1 11 C B 2 ? C B 2 . ? 1_555 ? 10 AC1 11 A B 3 ? A B 3 . ? 1_555 ? 11 AC1 11 HOH J . ? HOH B 119 . ? 1_555 ? 12 AC2 10 C A 2 ? C A 2 . ? 1_555 ? 13 AC2 10 A A 3 ? A A 3 . ? 1_555 ? 14 AC2 10 J48 E . ? J48 A 101 . ? 1_555 ? 15 AC2 10 HOH I . ? HOH A 201 . ? 1_555 ? 16 AC2 10 HOH I . ? HOH A 204 . ? 1_555 ? 17 AC2 10 HOH I . ? HOH A 211 . ? 1_555 ? 18 AC2 10 A B 3 ? A B 3 . ? 1_555 ? 19 AC2 10 C B 5 ? C B 5 . ? 1_555 ? 20 AC2 10 A B 6 ? A B 6 . ? 1_555 ? 21 AC2 10 G B 7 ? G B 7 . ? 1_555 ? 22 AC3 10 A C 3 ? A C 3 . ? 1_555 ? 23 AC3 10 A C 6 ? A C 6 . ? 1_555 ? 24 AC3 10 G C 7 ? G C 7 . ? 1_555 ? 25 AC3 10 HOH K . ? HOH C 204 . ? 1_555 ? 26 AC3 10 HOH K . ? HOH C 212 . ? 1_555 ? 27 AC3 10 HOH K . ? HOH C 219 . ? 1_555 ? 28 AC3 10 C D 2 ? C D 2 . ? 1_555 ? 29 AC3 10 A D 3 ? A D 3 . ? 1_555 ? 30 AC3 10 C D 5 ? C D 5 . ? 1_555 ? 31 AC3 10 J48 H . ? J48 D 101 . ? 1_555 ? 32 AC4 11 C C 2 ? C C 2 . ? 1_555 ? 33 AC4 11 A C 3 ? A C 3 . ? 1_555 ? 34 AC4 11 J48 G . ? J48 C 101 . ? 1_555 ? 35 AC4 11 HOH K . ? HOH C 222 . ? 1_555 ? 36 AC4 11 A D 3 ? A D 3 . ? 1_555 ? 37 AC4 11 A D 6 ? A D 6 . ? 1_555 ? 38 AC4 11 G D 7 ? G D 7 . ? 1_555 ? 39 AC4 11 HOH L . ? HOH D 201 . ? 1_555 ? 40 AC4 11 HOH L . ? HOH D 202 . ? 1_555 ? 41 AC4 11 HOH L . ? HOH D 204 . ? 1_555 ? 42 AC4 11 HOH L . ? HOH D 233 . ? 1_555 ? # _atom_sites.entry_id 6QIT _atom_sites.fract_transf_matrix[1][1] 0.028382 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007109 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019612 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026063 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 A 6 6 6 A A A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 C 2 2 2 C C B . n B 1 3 A 3 3 3 A A B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 A 6 6 6 A A B . n B 1 7 G 7 7 7 G G B . n B 1 8 C 8 8 8 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 C 2 2 2 C C C . n C 1 3 A 3 3 3 A A C . n C 1 4 G 4 4 4 G G C . n C 1 5 C 5 5 5 C C C . n C 1 6 A 6 6 6 A A C . n C 1 7 G 7 7 7 G G C . n C 1 8 C 8 8 8 C C C . n D 1 1 G 1 1 1 G G D . n D 1 2 C 2 2 2 C C D . n D 1 3 A 3 3 3 A A D . n D 1 4 G 4 4 4 G G D . n D 1 5 C 5 5 5 C C D . n D 1 6 A 6 6 6 A A D . n D 1 7 G 7 7 7 G G D . n D 1 8 C 8 8 8 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 J48 1 101 3 J48 C3B A . F 2 J48 1 102 4 J48 C3B A . G 2 J48 1 101 1 J48 C3B C . H 2 J48 1 101 2 J48 C3B D . I 3 HOH 1 201 167 HOH HOH A . I 3 HOH 2 202 7 HOH HOH A . I 3 HOH 3 203 61 HOH HOH A . I 3 HOH 4 204 74 HOH HOH A . I 3 HOH 5 205 39 HOH HOH A . I 3 HOH 6 206 107 HOH HOH A . I 3 HOH 7 207 144 HOH HOH A . I 3 HOH 8 208 69 HOH HOH A . I 3 HOH 9 209 6 HOH HOH A . I 3 HOH 10 210 99 HOH HOH A . I 3 HOH 11 211 105 HOH HOH A . I 3 HOH 12 212 42 HOH HOH A . I 3 HOH 13 213 111 HOH HOH A . I 3 HOH 14 214 77 HOH HOH A . I 3 HOH 15 215 73 HOH HOH A . I 3 HOH 16 216 37 HOH HOH A . I 3 HOH 17 217 58 HOH HOH A . I 3 HOH 18 218 60 HOH HOH A . I 3 HOH 19 219 19 HOH HOH A . I 3 HOH 20 220 20 HOH HOH A . I 3 HOH 21 221 72 HOH HOH A . I 3 HOH 22 222 149 HOH HOH A . I 3 HOH 23 223 116 HOH HOH A . I 3 HOH 24 224 120 HOH HOH A . I 3 HOH 25 225 109 HOH HOH A . I 3 HOH 26 226 131 HOH HOH A . I 3 HOH 27 227 113 HOH HOH A . I 3 HOH 28 228 103 HOH HOH A . I 3 HOH 29 229 76 HOH HOH A . I 3 HOH 30 230 63 HOH HOH A . I 3 HOH 31 231 44 HOH HOH A . I 3 HOH 32 232 25 HOH HOH A . I 3 HOH 33 233 128 HOH HOH A . I 3 HOH 34 234 26 HOH HOH A . I 3 HOH 35 235 161 HOH HOH A . I 3 HOH 36 236 141 HOH HOH A . I 3 HOH 37 237 158 HOH HOH A . I 3 HOH 38 238 145 HOH HOH A . I 3 HOH 39 239 89 HOH HOH A . I 3 HOH 40 240 166 HOH HOH A . I 3 HOH 41 241 179 HOH HOH A . I 3 HOH 42 242 98 HOH HOH A . I 3 HOH 43 243 15 HOH HOH A . I 3 HOH 44 244 96 HOH HOH A . I 3 HOH 45 245 156 HOH HOH A . I 3 HOH 46 246 162 HOH HOH A . I 3 HOH 47 247 178 HOH HOH A . I 3 HOH 48 248 57 HOH HOH A . I 3 HOH 49 249 163 HOH HOH A . J 3 HOH 1 101 32 HOH HOH B . J 3 HOH 2 102 118 HOH HOH B . J 3 HOH 3 103 85 HOH HOH B . J 3 HOH 4 104 93 HOH HOH B . J 3 HOH 5 105 171 HOH HOH B . J 3 HOH 6 106 154 HOH HOH B . J 3 HOH 7 107 108 HOH HOH B . J 3 HOH 8 108 62 HOH HOH B . J 3 HOH 9 109 153 HOH HOH B . J 3 HOH 10 110 125 HOH HOH B . J 3 HOH 11 111 130 HOH HOH B . J 3 HOH 12 112 55 HOH HOH B . J 3 HOH 13 113 56 HOH HOH B . J 3 HOH 14 114 115 HOH HOH B . J 3 HOH 15 115 165 HOH HOH B . J 3 HOH 16 116 47 HOH HOH B . J 3 HOH 17 117 70 HOH HOH B . J 3 HOH 18 118 50 HOH HOH B . J 3 HOH 19 119 36 HOH HOH B . J 3 HOH 20 120 3 HOH HOH B . J 3 HOH 21 121 123 HOH HOH B . J 3 HOH 22 122 10 HOH HOH B . J 3 HOH 23 123 169 HOH HOH B . J 3 HOH 24 124 140 HOH HOH B . J 3 HOH 25 125 54 HOH HOH B . J 3 HOH 26 126 159 HOH HOH B . J 3 HOH 27 127 88 HOH HOH B . J 3 HOH 28 128 64 HOH HOH B . J 3 HOH 29 129 45 HOH HOH B . J 3 HOH 30 130 53 HOH HOH B . J 3 HOH 31 131 170 HOH HOH B . J 3 HOH 32 132 147 HOH HOH B . J 3 HOH 33 133 175 HOH HOH B . J 3 HOH 34 134 80 HOH HOH B . J 3 HOH 35 135 139 HOH HOH B . K 3 HOH 1 201 49 HOH HOH C . K 3 HOH 2 202 82 HOH HOH C . K 3 HOH 3 203 101 HOH HOH C . K 3 HOH 4 204 28 HOH HOH C . K 3 HOH 5 205 133 HOH HOH C . K 3 HOH 6 206 112 HOH HOH C . K 3 HOH 7 207 168 HOH HOH C . K 3 HOH 8 208 135 HOH HOH C . K 3 HOH 9 209 132 HOH HOH C . K 3 HOH 10 210 67 HOH HOH C . K 3 HOH 11 211 137 HOH HOH C . K 3 HOH 12 212 17 HOH HOH C . K 3 HOH 13 213 1 HOH HOH C . K 3 HOH 14 214 23 HOH HOH C . K 3 HOH 15 215 4 HOH HOH C . K 3 HOH 16 216 90 HOH HOH C . K 3 HOH 17 217 124 HOH HOH C . K 3 HOH 18 218 46 HOH HOH C . K 3 HOH 19 219 31 HOH HOH C . K 3 HOH 20 220 16 HOH HOH C . K 3 HOH 21 221 59 HOH HOH C . K 3 HOH 22 222 121 HOH HOH C . K 3 HOH 23 223 11 HOH HOH C . K 3 HOH 24 224 97 HOH HOH C . K 3 HOH 25 225 114 HOH HOH C . K 3 HOH 26 226 100 HOH HOH C . K 3 HOH 27 227 9 HOH HOH C . K 3 HOH 28 228 119 HOH HOH C . K 3 HOH 29 229 48 HOH HOH C . K 3 HOH 30 230 66 HOH HOH C . K 3 HOH 31 231 35 HOH HOH C . K 3 HOH 32 232 75 HOH HOH C . K 3 HOH 33 233 14 HOH HOH C . K 3 HOH 34 234 146 HOH HOH C . K 3 HOH 35 235 143 HOH HOH C . K 3 HOH 36 236 30 HOH HOH C . K 3 HOH 37 237 106 HOH HOH C . K 3 HOH 38 238 95 HOH HOH C . K 3 HOH 39 239 43 HOH HOH C . K 3 HOH 40 240 87 HOH HOH C . K 3 HOH 41 241 94 HOH HOH C . K 3 HOH 42 242 78 HOH HOH C . K 3 HOH 43 243 104 HOH HOH C . K 3 HOH 44 244 176 HOH HOH C . K 3 HOH 45 245 148 HOH HOH C . K 3 HOH 46 246 142 HOH HOH C . K 3 HOH 47 247 12 HOH HOH C . K 3 HOH 48 248 150 HOH HOH C . K 3 HOH 49 249 172 HOH HOH C . L 3 HOH 1 201 151 HOH HOH D . L 3 HOH 2 202 27 HOH HOH D . L 3 HOH 3 203 5 HOH HOH D . L 3 HOH 4 204 13 HOH HOH D . L 3 HOH 5 205 2 HOH HOH D . L 3 HOH 6 206 91 HOH HOH D . L 3 HOH 7 207 102 HOH HOH D . L 3 HOH 8 208 174 HOH HOH D . L 3 HOH 9 209 155 HOH HOH D . L 3 HOH 10 210 51 HOH HOH D . L 3 HOH 11 211 38 HOH HOH D . L 3 HOH 12 212 18 HOH HOH D . L 3 HOH 13 213 160 HOH HOH D . L 3 HOH 14 214 129 HOH HOH D . L 3 HOH 15 215 21 HOH HOH D . L 3 HOH 16 216 41 HOH HOH D . L 3 HOH 17 217 8 HOH HOH D . L 3 HOH 18 218 52 HOH HOH D . L 3 HOH 19 219 134 HOH HOH D . L 3 HOH 20 220 33 HOH HOH D . L 3 HOH 21 221 79 HOH HOH D . L 3 HOH 22 222 84 HOH HOH D . L 3 HOH 23 223 110 HOH HOH D . L 3 HOH 24 224 117 HOH HOH D . L 3 HOH 25 225 71 HOH HOH D . L 3 HOH 26 226 68 HOH HOH D . L 3 HOH 27 227 164 HOH HOH D . L 3 HOH 28 228 22 HOH HOH D . L 3 HOH 29 229 29 HOH HOH D . L 3 HOH 30 230 83 HOH HOH D . L 3 HOH 31 231 138 HOH HOH D . L 3 HOH 32 232 40 HOH HOH D . L 3 HOH 33 233 122 HOH HOH D . L 3 HOH 34 234 81 HOH HOH D . L 3 HOH 35 235 86 HOH HOH D . L 3 HOH 36 236 136 HOH HOH D . L 3 HOH 37 237 173 HOH HOH D . L 3 HOH 38 238 157 HOH HOH D . L 3 HOH 39 239 24 HOH HOH D . L 3 HOH 40 240 65 HOH HOH D . L 3 HOH 41 241 34 HOH HOH D . L 3 HOH 42 242 126 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,I,J 2 1 C,D,G,H,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-09-25 2 'Structure model' 1 1 2019-10-09 3 'Structure model' 1 2 2019-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_DOI' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.13_2998: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _ndb_struct_conf_na.entry_id 6QIT _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 8 1_555 -0.246 -0.133 0.154 1.092 -4.226 -0.023 1 A_G1:C8_B A 1 ? B 8 ? 19 1 1 A C 2 1_555 B G 7 1_555 0.278 -0.156 -0.038 2.930 -8.032 -0.315 2 A_C2:G7_B A 2 ? B 7 ? 19 1 1 A C 5 1_555 D C 5 1_555 -2.706 0.344 0.116 16.993 34.247 89.043 3 A_C5:C5_D A 5 ? D 5 ? ? ? 1 A G 7 1_555 B C 2 1_555 -0.186 -0.063 -0.089 -8.529 -8.402 2.072 4 A_G7:C2_B A 7 ? B 2 ? 19 1 1 A C 8 1_555 B G 1 1_555 0.272 -0.100 0.121 2.223 -4.373 -1.371 5 A_C8:G1_B A 8 ? B 1 ? 19 1 1 C G 1 1_555 D C 8 1_555 -0.223 -0.172 -0.070 -4.300 -4.091 -0.166 6 C_G1:C8_D C 1 ? D 8 ? 19 1 1 C C 2 1_555 D G 7 1_555 0.178 -0.129 -0.053 -0.266 -9.751 -0.857 7 C_C2:G7_D C 2 ? D 7 ? 19 1 1 C G 7 1_555 D C 2 1_555 -0.170 -0.127 -0.063 -4.260 -6.826 0.782 8 C_G7:C2_D C 7 ? D 2 ? 19 1 1 C C 8 1_555 D G 1 1_555 0.326 -0.067 -0.034 2.337 -3.305 0.762 9 C_C8:G1_D C 8 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 8 1_555 A C 2 1_555 B G 7 1_555 -0.451 -1.957 3.232 -0.622 1.953 33.392 -3.713 0.683 3.124 3.395 1.081 33.453 1 AA_G1C2:G7C8_BB A 1 ? B 8 ? A 2 ? B 7 ? 1 A G 7 1_555 B C 2 1_555 A C 8 1_555 B G 1 1_555 -0.752 -2.156 3.096 -1.945 0.080 28.598 -4.371 1.100 3.133 0.162 3.932 28.663 2 AA_G7C8:G1C2_BB A 7 ? B 2 ? A 8 ? B 1 ? 1 C G 1 1_555 D C 8 1_555 C C 2 1_555 D G 7 1_555 -0.475 -2.121 3.264 -0.537 0.958 30.407 -4.231 0.799 3.205 1.826 1.023 30.427 3 CC_G1C2:G7C8_DD C 1 ? D 8 ? C 2 ? D 7 ? 1 C G 7 1_555 D C 2 1_555 C C 8 1_555 D G 1 1_555 -0.098 -1.703 3.099 0.392 2.647 34.836 -3.208 0.218 2.965 4.414 -0.653 34.935 4 CC_G7C8:G1C2_DD C 7 ? D 2 ? C 8 ? D 1 ? # _pdbx_audit_support.funding_organization ? _pdbx_audit_support.country Poland _pdbx_audit_support.grant_number 'NCN 2017/26/E/NZ1/00950' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 CMBL3a J48 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #