HEADER UNKNOWN FUNCTION 21-JAN-19 6QIX TITLE THE CRYSTAL STRUCTURE OF TRICHURIS MURIS P43 COMPND MOL_ID: 1; COMPND 2 MOLECULE: P43; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHURIS MURIS; SOURCE 3 ORGANISM_COMMON: MOUSE WHIPWORM; SOURCE 4 ORGANISM_TAXID: 70415 KEYWDS PARASITE HELMINTH, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.W.LEVY REVDAT 2 29-JUL-20 6QIX 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 12-JUN-19 6QIX 0 JRNL AUTH A.J.BANCROFT,C.W.LEVY,T.A.JOWITT,K.S.HAYES,S.THOMPSON, JRNL AUTH 2 E.A.MCKENZIE,M.D.BALL,E.DUBAISSI,A.P.FRANCE,B.BELLINA, JRNL AUTH 3 C.SHARPE,A.MIRONOV,S.L.BROWN,P.C.COOK,A.S MACDONALD, JRNL AUTH 4 D.J.THORNTON,R.K.GRENCIS JRNL TITL THE MAJOR SECRETED PROTEIN OF THE WHIPWORM PARASITE TETHERS JRNL TITL 2 TO MATRIX AND INHIBITS INTERLEUKIN-13 FUNCTION. JRNL REF NAT COMMUN V. 10 2344 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31138806 JRNL DOI 10.1038/S41467-019-09996-Z REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3304 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 103443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 5140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.3800 - 5.1300 0.96 3268 172 0.1677 0.1837 REMARK 3 2 5.1300 - 4.0700 0.99 3353 148 0.1212 0.1505 REMARK 3 3 4.0700 - 3.5500 1.00 3353 192 0.1384 0.1512 REMARK 3 4 3.5500 - 3.2300 1.00 3367 143 0.1487 0.1616 REMARK 3 5 3.2300 - 3.0000 0.99 3345 166 0.1496 0.1727 REMARK 3 6 3.0000 - 2.8200 0.94 3155 167 0.1472 0.1874 REMARK 3 7 2.8200 - 2.6800 0.97 3260 164 0.1416 0.1877 REMARK 3 8 2.6800 - 2.5600 0.99 3309 185 0.1379 0.1877 REMARK 3 9 2.5600 - 2.4600 0.99 3324 200 0.1314 0.1836 REMARK 3 10 2.4600 - 2.3800 0.99 3318 172 0.1303 0.1759 REMARK 3 11 2.3800 - 2.3100 0.99 3354 173 0.1274 0.1847 REMARK 3 12 2.3100 - 2.2400 0.99 3298 169 0.1302 0.1813 REMARK 3 13 2.2400 - 2.1800 0.99 3289 154 0.1315 0.1968 REMARK 3 14 2.1800 - 2.1300 0.99 3390 161 0.1380 0.1912 REMARK 3 15 2.1300 - 2.0800 0.99 3296 168 0.1397 0.1908 REMARK 3 16 2.0800 - 2.0300 0.99 3351 148 0.1460 0.2149 REMARK 3 17 2.0300 - 1.9900 0.95 3216 153 0.1441 0.1759 REMARK 3 18 1.9900 - 1.9600 0.96 3236 151 0.1479 0.2102 REMARK 3 19 1.9600 - 1.9200 0.98 3263 176 0.1520 0.2208 REMARK 3 20 1.9200 - 1.8900 0.99 3383 157 0.1502 0.2136 REMARK 3 21 1.8900 - 1.8600 0.98 3230 172 0.1678 0.2297 REMARK 3 22 1.8600 - 1.8300 0.98 3320 163 0.1723 0.2294 REMARK 3 23 1.8300 - 1.8000 0.98 3249 179 0.1779 0.2206 REMARK 3 24 1.8000 - 1.7800 0.98 3316 189 0.2062 0.2822 REMARK 3 25 1.7800 - 1.7500 0.98 3213 188 0.2230 0.2578 REMARK 3 26 1.7500 - 1.7300 0.97 3258 208 0.2269 0.2586 REMARK 3 27 1.7300 - 1.7100 0.97 3179 183 0.2432 0.2905 REMARK 3 28 1.7100 - 1.6900 0.95 3191 170 0.2634 0.2855 REMARK 3 29 1.6900 - 1.6700 0.94 3146 205 0.2809 0.3211 REMARK 3 30 1.6700 - 1.6500 0.93 3073 164 0.2980 0.3496 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.186 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.541 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 6044 REMARK 3 ANGLE : 1.194 8170 REMARK 3 CHIRALITY : 0.060 792 REMARK 3 PLANARITY : 0.008 1053 REMARK 3 DIHEDRAL : 4.612 5022 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QIX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103460 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 57.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.12670 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 1.95300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INHOUSE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CARBOXYLIC ACIDS 0.1 M BUFFER REMARK 280 SYSTEM 3 8.5 50 % V/V PRECIPITANT MIX 1 MORPHEUS G9 MOLECULAR REMARK 280 DIMENSIONS PRECIPITANT MIX 1 P500MME_P20K 40% V/V PEG 500* MME; REMARK 280 20 % W/V PEG 20000, BUFFER SYSTEM 1 1.0M 6.5 IMIDAZOLE; MES REMARK 280 MONOHYDRATE (ACID), CARBOXYLIC ACIDS 0.2M SODIUM FORMATE; 0.2M REMARK 280 AMMONIUM ACETATE; 0.2M SODIUM CITRATE TRIBASIC DIHYDRATE; 0.2M REMARK 280 SODIUM POTASSIUM TARTRATE TETRAHYDRATE; 0.2M SODIUM OXAMATE, PH REMARK 280 7.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 82.41700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 PHE A 5 REMARK 465 PHE A 6 REMARK 465 PRO A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 LEU A 10 REMARK 465 THR A 11 REMARK 465 VAL A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 SER A 15 REMARK 465 THR A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 HIS A 19 REMARK 465 VAL A 20 REMARK 465 LYS A 21 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 465 HIS A 371 REMARK 465 ASP A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 GLY A 375 REMARK 465 HIS A 376 REMARK 465 GLY A 377 REMARK 465 GLU A 378 REMARK 465 GLU A 379 REMARK 465 HIS A 380 REMARK 465 HIS A 381 REMARK 465 LYS A 382 REMARK 465 SER A 383 REMARK 465 SER A 384 REMARK 465 SER A 385 REMARK 465 SER A 386 REMARK 465 GLU A 387 REMARK 465 SER A 388 REMARK 465 LYS A 389 REMARK 465 GLU A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 VAL B 3 REMARK 465 LEU B 4 REMARK 465 PHE B 5 REMARK 465 PHE B 6 REMARK 465 PRO B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 9 REMARK 465 LEU B 10 REMARK 465 THR B 11 REMARK 465 VAL B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 SER B 15 REMARK 465 THR B 16 REMARK 465 ALA B 17 REMARK 465 GLY B 18 REMARK 465 HIS B 19 REMARK 465 VAL B 20 REMARK 465 LEU B 368 REMARK 465 HIS B 369 REMARK 465 HIS B 370 REMARK 465 HIS B 371 REMARK 465 ASP B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 GLY B 375 REMARK 465 HIS B 376 REMARK 465 GLY B 377 REMARK 465 GLU B 378 REMARK 465 GLU B 379 REMARK 465 HIS B 380 REMARK 465 HIS B 381 REMARK 465 LYS B 382 REMARK 465 SER B 383 REMARK 465 SER B 384 REMARK 465 SER B 385 REMARK 465 SER B 386 REMARK 465 GLU B 387 REMARK 465 SER B 388 REMARK 465 LYS B 389 REMARK 465 GLU B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 465 HIS B 393 REMARK 465 HIS B 394 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 297 O HOH A 501 1.26 REMARK 500 HZ2 LYS A 297 O HOH A 505 1.56 REMARK 500 HH22 ARG B 146 O HOH B 511 1.57 REMARK 500 HZ1 LYS B 127 O HOH B 502 1.59 REMARK 500 NZ LYS A 297 O HOH A 501 1.63 REMARK 500 O HOH A 543 O HOH A 652 1.89 REMARK 500 O HOH A 697 O HOH A 770 1.92 REMARK 500 O HOH B 719 O HOH B 766 2.00 REMARK 500 OE2 GLU A 221 O HOH A 502 2.00 REMARK 500 O HOH A 556 O HOH A 664 2.05 REMARK 500 O HOH B 788 O HOH B 822 2.06 REMARK 500 O HOH B 791 O HOH B 850 2.09 REMARK 500 O1 PEG B 407 O HOH B 502 2.10 REMARK 500 O HOH B 731 O HOH B 849 2.14 REMARK 500 O HOH B 791 O HOH B 833 2.15 REMARK 500 O HOH A 743 O HOH A 761 2.15 REMARK 500 O HOH B 789 O HOH B 826 2.16 REMARK 500 O HOH B 783 O HOH B 833 2.18 REMARK 500 OE1 GLU A 298 O HOH A 503 2.18 REMARK 500 O HOH A 559 O HOH B 784 2.19 REMARK 500 O HOH A 813 O HOH A 818 2.19 REMARK 500 O HOH B 743 O HOH B 828 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 687 O HOH B 817 2445 2.12 REMARK 500 O HOH B 614 O HOH B 789 1655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 324 CG - SD - CE ANGL. DEV. = 17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 27 -170.81 50.78 REMARK 500 MET A 62 37.15 -146.72 REMARK 500 MET A 62 50.52 -148.16 REMARK 500 HIS A 116 -33.98 74.34 REMARK 500 PRO A 232 -172.01 -57.37 REMARK 500 ASN A 234 41.77 -144.17 REMARK 500 LYS A 256 137.67 -170.59 REMARK 500 ASN A 350 -179.11 -69.36 REMARK 500 HIS B 116 -38.46 72.70 REMARK 500 ASN B 234 -5.87 109.16 REMARK 500 LYS B 240 129.17 -37.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 27 TRP A 28 -122.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 407 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 576 O REMARK 620 2 HOH A 747 O 79.4 REMARK 620 3 HOH A 758 O 81.5 76.0 REMARK 620 4 HOH B 652 O 97.1 176.6 103.6 REMARK 620 5 HOH B 740 O 174.9 105.0 102.0 78.5 REMARK 620 6 HOH B 772 O 92.1 101.4 173.5 78.7 84.4 REMARK 620 N 1 2 3 4 5 DBREF1 6QIX A 1 394 UNP A0A0N5DW69_TRIMR DBREF2 6QIX A A0A0N5DW69 4 397 DBREF1 6QIX B 1 394 UNP A0A0N5DW69_TRIMR DBREF2 6QIX B A0A0N5DW69 4 397 SEQRES 1 A 394 MET LEU VAL LEU PHE PHE PRO LEU LEU LEU THR VAL GLY SEQRES 2 A 394 LEU SER THR ALA GLY HIS VAL LYS CYS PRO ASP PHE GLY SEQRES 3 A 394 ASP TRP LYS PRO TRP THR ASP CYS LEU TRP TYR PRO PRO SEQRES 4 A 394 GLN HIS MET TYR SER LYS LEU SER HIS ALA CYS GLY MET SEQRES 5 A 394 HIS ALA HIS ARG ASN LEU THR GLY VAL MET ASP LEU PRO SEQRES 6 A 394 HIS GLY HIS LYS THR PRO PRO PRO CYS GLY HIS CYS SER SEQRES 7 A 394 PHE LYS PHE ARG CYS ARG ARG ARG PRO ASN THR GLU GLY SEQRES 8 A 394 CYS TYR PRO LEU ASP GLY GLU VAL GLU VAL CYS HIS ASP SEQRES 9 A 394 HIS SER ASP ILE CYS THR LEU PRO LYS LEU PRO HIS LEU SEQRES 10 A 394 GLY CYS GLY TYR ALA PHE ILE ASN GLU LYS LEU LYS GLN SEQRES 11 A 394 CYS PHE THR ARG PRO ASP THR PRO SER TYR VAL ARG LEU SEQRES 12 A 394 GLY TYR ARG LYS MET PHE GLU SER ILE PRO LYS LYS HIS SEQRES 13 A 394 CYS ILE GLU LYS ASP GLY MET CYS LYS CYS CYS CYS GLY SEQRES 14 A 394 ASP TYR GLU PRO ASN GLU SER GLY THR GLU CYS ILE LYS SEQRES 15 A 394 PRO PRO ALA HIS ASP CYS PRO ALA TYR GLY PRO PRO SER SEQRES 16 A 394 GLU TRP SER GLU CYS LEU TRP PHE PRO LEU LYS ASN ILE SEQRES 17 A 394 VAL SER HIS VAL TYR ASP HIS CYS HIS VAL HIS LYS GLU SEQRES 18 A 394 PRO ASP GLY TYR GLU PRO HIS SER VAL ALA PRO ALA ASN SEQRES 19 A 394 VAL HIS ILE PRO GLU LYS CYS GLY PHE CYS SER PHE ARG SEQRES 20 A 394 VAL LYS CYS MET LYS ARG ASP LYS LYS ASP GLY CYS PHE SEQRES 21 A 394 PRO LEU LYS LEU GLY LYS LYS SER CYS GLY LYS ASP ASP SEQRES 22 A 394 CYS PRO THR CYS GLY ASP ILE CYS THR LEU ASP LYS ILE SEQRES 23 A 394 ASN GLY SER CYS ALA PHE PRO ARG VAL MET LYS GLU LYS SEQRES 24 A 394 ILE TRP ASP ASP PHE THR ALA THR SER LYS GLU LYS HIS SEQRES 25 A 394 MET PRO HIS TRP LYS ARG ASP GLY TYR ALA LYS MET LEU SEQRES 26 A 394 MET GLN LEU PRO TYR SER ASN CYS LYS GLU VAL GLY ASP SEQRES 27 A 394 LYS CYS LYS CYS CYS CYS HIS PRO TYR GLU PRO ASN LYS SEQRES 28 A 394 ASP GLY THR ALA CYS VAL VAL LYS GLU TYR CYS LYS ARG SEQRES 29 A 394 VAL HIS GLU LEU HIS HIS HIS ASP HIS HIS GLY HIS GLY SEQRES 30 A 394 GLU GLU HIS HIS LYS SER SER SER SER GLU SER LYS GLU SEQRES 31 A 394 HIS HIS HIS HIS SEQRES 1 B 394 MET LEU VAL LEU PHE PHE PRO LEU LEU LEU THR VAL GLY SEQRES 2 B 394 LEU SER THR ALA GLY HIS VAL LYS CYS PRO ASP PHE GLY SEQRES 3 B 394 ASP TRP LYS PRO TRP THR ASP CYS LEU TRP TYR PRO PRO SEQRES 4 B 394 GLN HIS MET TYR SER LYS LEU SER HIS ALA CYS GLY MET SEQRES 5 B 394 HIS ALA HIS ARG ASN LEU THR GLY VAL MET ASP LEU PRO SEQRES 6 B 394 HIS GLY HIS LYS THR PRO PRO PRO CYS GLY HIS CYS SER SEQRES 7 B 394 PHE LYS PHE ARG CYS ARG ARG ARG PRO ASN THR GLU GLY SEQRES 8 B 394 CYS TYR PRO LEU ASP GLY GLU VAL GLU VAL CYS HIS ASP SEQRES 9 B 394 HIS SER ASP ILE CYS THR LEU PRO LYS LEU PRO HIS LEU SEQRES 10 B 394 GLY CYS GLY TYR ALA PHE ILE ASN GLU LYS LEU LYS GLN SEQRES 11 B 394 CYS PHE THR ARG PRO ASP THR PRO SER TYR VAL ARG LEU SEQRES 12 B 394 GLY TYR ARG LYS MET PHE GLU SER ILE PRO LYS LYS HIS SEQRES 13 B 394 CYS ILE GLU LYS ASP GLY MET CYS LYS CYS CYS CYS GLY SEQRES 14 B 394 ASP TYR GLU PRO ASN GLU SER GLY THR GLU CYS ILE LYS SEQRES 15 B 394 PRO PRO ALA HIS ASP CYS PRO ALA TYR GLY PRO PRO SER SEQRES 16 B 394 GLU TRP SER GLU CYS LEU TRP PHE PRO LEU LYS ASN ILE SEQRES 17 B 394 VAL SER HIS VAL TYR ASP HIS CYS HIS VAL HIS LYS GLU SEQRES 18 B 394 PRO ASP GLY TYR GLU PRO HIS SER VAL ALA PRO ALA ASN SEQRES 19 B 394 VAL HIS ILE PRO GLU LYS CYS GLY PHE CYS SER PHE ARG SEQRES 20 B 394 VAL LYS CYS MET LYS ARG ASP LYS LYS ASP GLY CYS PHE SEQRES 21 B 394 PRO LEU LYS LEU GLY LYS LYS SER CYS GLY LYS ASP ASP SEQRES 22 B 394 CYS PRO THR CYS GLY ASP ILE CYS THR LEU ASP LYS ILE SEQRES 23 B 394 ASN GLY SER CYS ALA PHE PRO ARG VAL MET LYS GLU LYS SEQRES 24 B 394 ILE TRP ASP ASP PHE THR ALA THR SER LYS GLU LYS HIS SEQRES 25 B 394 MET PRO HIS TRP LYS ARG ASP GLY TYR ALA LYS MET LEU SEQRES 26 B 394 MET GLN LEU PRO TYR SER ASN CYS LYS GLU VAL GLY ASP SEQRES 27 B 394 LYS CYS LYS CYS CYS CYS HIS PRO TYR GLU PRO ASN LYS SEQRES 28 B 394 ASP GLY THR ALA CYS VAL VAL LYS GLU TYR CYS LYS ARG SEQRES 29 B 394 VAL HIS GLU LEU HIS HIS HIS ASP HIS HIS GLY HIS GLY SEQRES 30 B 394 GLU GLU HIS HIS LYS SER SER SER SER GLU SER LYS GLU SEQRES 31 B 394 HIS HIS HIS HIS HET NAG A 401 28 HET ACT A 402 7 HET P6G A 403 45 HET P6G A 404 45 HET ACT A 405 7 HET NAG A 406 28 HET CA A 407 1 HET PEG A 408 17 HET PEG A 409 17 HET ACT A 410 7 HET NAG B 401 28 HET P6G B 402 45 HET P6G B 403 45 HET NAG B 404 28 HET PEG B 405 17 HET PEG B 406 17 HET PEG B 407 17 HET ACT B 408 7 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ACT ACETATE ION HETNAM P6G HEXAETHYLENE GLYCOL HETNAM CA CALCIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 4 ACT 4(C2 H3 O2 1-) FORMUL 5 P6G 4(C12 H26 O7) FORMUL 9 CA CA 2+ FORMUL 10 PEG 5(C4 H10 O3) FORMUL 21 HOH *693(H2 O) HELIX 1 AA1 PRO A 38 CYS A 50 1 13 HELIX 2 AA2 ASN A 125 GLN A 130 1 6 HELIX 3 AA3 CYS A 131 THR A 133 5 3 HELIX 4 AA4 PRO A 138 ILE A 152 1 15 HELIX 5 AA5 PRO A 204 HIS A 217 1 14 HELIX 6 AA6 ALA A 291 LYS A 311 1 21 HELIX 7 AA7 PRO A 314 MET A 326 1 13 HELIX 8 AA8 GLU A 360 LYS A 363 5 4 HELIX 9 AA9 ARG A 364 LEU A 368 5 5 HELIX 10 AB1 PRO B 38 CYS B 50 1 13 HELIX 11 AB2 ASN B 125 GLN B 130 1 6 HELIX 12 AB3 CYS B 131 THR B 133 5 3 HELIX 13 AB4 PRO B 138 ILE B 152 1 15 HELIX 14 AB5 PRO B 204 HIS B 217 1 14 HELIX 15 AB6 ALA B 291 LYS B 311 1 21 HELIX 16 AB7 PRO B 314 MET B 326 1 13 HELIX 17 AB8 GLU B 360 LYS B 363 5 4 SHEET 1 AA1 2 PHE A 79 ARG A 85 0 SHEET 2 AA1 2 LEU A 95 VAL A 101 -1 O GLU A 100 N LYS A 80 SHEET 1 AA2 3 CYS A 109 PRO A 112 0 SHEET 2 AA2 3 MET A 163 CYS A 168 -1 O CYS A 164 N LEU A 111 SHEET 3 AA2 3 LYS A 155 LYS A 160 -1 N ILE A 158 O LYS A 165 SHEET 1 AA3 2 GLU A 172 PRO A 173 0 SHEET 2 AA3 2 CYS A 180 ILE A 181 -1 O ILE A 181 N GLU A 172 SHEET 1 AA4 2 PHE A 246 LYS A 252 0 SHEET 2 AA4 2 LEU A 262 SER A 268 -1 O LYS A 267 N ARG A 247 SHEET 1 AA5 3 CYS A 281 ASP A 284 0 SHEET 2 AA5 3 LYS A 339 CYS A 344 -1 O CYS A 340 N LEU A 283 SHEET 3 AA5 3 SER A 331 VAL A 336 -1 N LYS A 334 O LYS A 341 SHEET 1 AA6 2 TYR A 347 PRO A 349 0 SHEET 2 AA6 2 CYS A 356 VAL A 358 -1 O VAL A 357 N GLU A 348 SHEET 1 AA7 2 PHE B 79 ARG B 85 0 SHEET 2 AA7 2 LEU B 95 VAL B 101 -1 O GLU B 100 N LYS B 80 SHEET 1 AA8 3 CYS B 109 LEU B 111 0 SHEET 2 AA8 3 MET B 163 CYS B 168 -1 O CYS B 164 N LEU B 111 SHEET 3 AA8 3 LYS B 155 LYS B 160 -1 N ILE B 158 O LYS B 165 SHEET 1 AA9 2 GLU B 172 PRO B 173 0 SHEET 2 AA9 2 CYS B 180 ILE B 181 -1 O ILE B 181 N GLU B 172 SHEET 1 AB1 2 PHE B 246 LYS B 252 0 SHEET 2 AB1 2 LEU B 262 SER B 268 -1 O LYS B 267 N ARG B 247 SHEET 1 AB2 3 CYS B 281 ASP B 284 0 SHEET 2 AB2 3 LYS B 339 CYS B 344 -1 O CYS B 340 N LEU B 283 SHEET 3 AB2 3 SER B 331 VAL B 336 -1 N LYS B 334 O LYS B 341 SHEET 1 AB3 2 TYR B 347 PRO B 349 0 SHEET 2 AB3 2 CYS B 356 VAL B 358 -1 O VAL B 357 N GLU B 348 SSBOND 1 CYS A 22 CYS A 92 1555 1555 2.06 SSBOND 2 CYS A 34 CYS A 102 1555 1555 2.07 SSBOND 3 CYS A 50 CYS A 83 1555 1555 2.06 SSBOND 4 CYS A 74 CYS A 109 1555 1555 2.03 SSBOND 5 CYS A 77 CYS A 168 1555 1555 2.07 SSBOND 6 CYS A 119 CYS A 164 1555 1555 2.05 SSBOND 7 CYS A 131 CYS A 362 1555 1555 2.08 SSBOND 8 CYS A 157 CYS A 166 1555 1555 2.11 SSBOND 9 CYS A 167 CYS A 180 1555 1555 2.12 SSBOND 10 CYS A 188 CYS A 259 1555 1555 2.06 SSBOND 11 CYS A 200 CYS A 269 1555 1555 2.12 SSBOND 12 CYS A 216 CYS A 250 1555 1555 2.05 SSBOND 13 CYS A 241 CYS A 281 1555 1555 2.07 SSBOND 14 CYS A 244 CYS A 344 1555 1555 2.09 SSBOND 15 CYS A 274 CYS A 277 1555 1555 2.13 SSBOND 16 CYS A 290 CYS A 340 1555 1555 2.05 SSBOND 17 CYS A 333 CYS A 342 1555 1555 2.06 SSBOND 18 CYS A 343 CYS A 356 1555 1555 2.14 SSBOND 19 CYS B 22 CYS B 92 1555 1555 2.04 SSBOND 20 CYS B 34 CYS B 102 1555 1555 2.14 SSBOND 21 CYS B 50 CYS B 83 1555 1555 2.07 SSBOND 22 CYS B 74 CYS B 109 1555 1555 2.05 SSBOND 23 CYS B 77 CYS B 168 1555 1555 2.05 SSBOND 24 CYS B 119 CYS B 164 1555 1555 2.07 SSBOND 25 CYS B 131 CYS B 362 1555 1555 2.07 SSBOND 26 CYS B 157 CYS B 166 1555 1555 2.10 SSBOND 27 CYS B 167 CYS B 180 1555 1555 2.10 SSBOND 28 CYS B 188 CYS B 259 1555 1555 2.11 SSBOND 29 CYS B 200 CYS B 269 1555 1555 2.13 SSBOND 30 CYS B 216 CYS B 250 1555 1555 2.04 SSBOND 31 CYS B 241 CYS B 281 1555 1555 2.05 SSBOND 32 CYS B 244 CYS B 344 1555 1555 2.09 SSBOND 33 CYS B 274 CYS B 277 1555 1555 2.12 SSBOND 34 CYS B 290 CYS B 340 1555 1555 2.05 SSBOND 35 CYS B 333 CYS B 342 1555 1555 2.08 SSBOND 36 CYS B 343 CYS B 356 1555 1555 2.11 LINK ND2 ASN A 57 C1 NAG A 401 1555 1555 1.46 LINK ND2 ASN A 287 C1 NAG A 406 1555 1555 1.45 LINK ND2 ASN B 57 C1 NAG B 401 1555 1555 1.43 LINK ND2 ASN B 287 C1 NAG B 404 1555 1555 1.43 LINK CA CA A 407 O HOH A 576 1555 1555 2.76 LINK CA CA A 407 O HOH A 747 1555 1555 2.80 LINK CA CA A 407 O HOH A 758 1555 1555 2.70 LINK CA CA A 407 O HOH B 652 1555 1555 2.48 LINK CA CA A 407 O HOH B 740 1555 1555 2.54 LINK CA CA A 407 O HOH B 772 1555 1555 3.05 CISPEP 1 TYR A 37 PRO A 38 0 5.99 CISPEP 2 PHE A 203 PRO A 204 0 4.06 CISPEP 3 HIS A 345 PRO A 346 0 10.66 CISPEP 4 TYR B 37 PRO B 38 0 7.00 CISPEP 5 PHE B 203 PRO B 204 0 5.38 CISPEP 6 HIS B 345 PRO B 346 0 10.86 CRYST1 47.682 164.834 61.169 90.00 110.37 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020972 0.000000 0.007787 0.00000 SCALE2 0.000000 0.006067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017439 0.00000