HEADER IMMUNE SYSTEM 24-JAN-19 6QJB TITLE TRUNCATED EVASIN-3 (TEV3 17-56) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EVASIN-3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: RHIPICEPHALUS SANGUINEUS; SOURCE 4 ORGANISM_COMMON: BROWN DOG TICK; SOURCE 5 ORGANISM_TAXID: 34632 KEYWDS CHEMOKINE-BINDING PROTEIN, TICKS, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.S.DENISOV,J.H.IPPEL,A.C.A.HEINZMAN,R.R.KOENEN,A.ORTEGA-GOMEZ, AUTHOR 2 O.SOEHNLEIN,T.M.HACKENG,I.DIJKGRAAF REVDAT 5 14-JUN-23 6QJB 1 REMARK REVDAT 4 28-AUG-19 6QJB 1 JRNL REVDAT 3 17-JUL-19 6QJB 1 REMARK REVDAT 2 10-JUL-19 6QJB 1 JRNL REVDAT 1 03-JUL-19 6QJB 0 JRNL AUTH S.S.DENISOV,J.H.IPPEL,A.C.A.HEINZMANN,R.R.KOENEN, JRNL AUTH 2 A.ORTEGA-GOMEZ,O.SOEHNLEIN,T.M.HACKENG,I.DIJKGRAAF JRNL TITL TICK SALIVA PROTEIN EVASIN-3 MODULATES CHEMOTAXIS BY JRNL TITL 2 DISRUPTING CXCL8 INTERACTIONS WITH GLYCOSAMINOGLYCANS AND JRNL TITL 3 CXCR2. JRNL REF J.BIOL.CHEM. V. 294 12370 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31235521 JRNL DOI 10.1074/JBC.RA119.008902 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRE REMARK 3 AUTHORS : HYOJUNG RYU, GYUTAE LIM, BONG HYUN SUNG, JINHYUK REMARK 3 LEE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QJB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100203. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 37 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 325 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 100 MM EDTA, 200 MM SODIUM REMARK 210 AZIDE, 25 MM [U-2H] SODIUM REMARK 210 ACETATE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 2D 1H-13C REMARK 210 HSQC; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRFAM-SPARKY, XPLOR-NIH REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 51 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 TYR A 51 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 2 TYR A 51 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 2 TYR A 51 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 TYR A 51 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 5 TYR A 51 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 5 TYR A 51 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 7 TYR A 51 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 7 TYR A 51 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 8 TYR A 51 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 9 TYR A 51 CB - CG - CD2 ANGL. DEV. = 3.9 DEGREES REMARK 500 9 TYR A 51 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 10 TYR A 51 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 11 CYS A 26 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 11 TYR A 51 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 11 TYR A 51 CB - CG - CD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 12 TYR A 51 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 12 TYR A 51 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 13 TYR A 51 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 13 TYR A 51 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 14 TYR A 51 CB - CG - CD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 14 TYR A 51 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 15 TYR A 51 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 17 TYR A 51 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 18 TYR A 51 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 18 TYR A 51 CB - CG - CD1 ANGL. DEV. = -5.2 DEGREES REMARK 500 19 TYR A 51 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 19 TYR A 51 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 20 CYS A 26 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 20 TYR A 51 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 46 -64.65 -155.15 REMARK 500 2 LYS A 46 -98.69 -131.46 REMARK 500 3 LYS A 46 -100.97 -137.70 REMARK 500 4 LYS A 46 -105.34 -131.00 REMARK 500 5 LYS A 46 -106.20 -149.33 REMARK 500 6 ASN A 45 -72.83 -94.62 REMARK 500 6 LYS A 46 -96.41 -116.01 REMARK 500 7 LYS A 46 -103.07 -131.15 REMARK 500 8 ASN A 45 -98.70 -89.60 REMARK 500 8 LYS A 46 -89.16 -96.89 REMARK 500 9 ASN A 45 -61.43 -90.66 REMARK 500 9 LYS A 46 -103.77 -127.36 REMARK 500 10 ASN A 45 -109.09 -87.98 REMARK 500 10 LYS A 46 -107.29 -105.40 REMARK 500 12 LYS A 46 -133.46 -139.40 REMARK 500 14 LYS A 46 -120.81 -144.32 REMARK 500 17 ASN A 45 -74.08 -97.48 REMARK 500 17 LYS A 46 -101.55 -119.66 REMARK 500 19 LYS A 46 -125.63 -140.65 REMARK 500 20 ASN A 45 -119.59 -103.33 REMARK 500 20 LYS A 46 -101.16 -98.72 REMARK 500 20 LYS A 47 -32.39 -130.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 41 LEU A 42 20 -148.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 51 0.07 SIDE CHAIN REMARK 500 9 TYR A 51 0.08 SIDE CHAIN REMARK 500 11 TYR A 51 0.14 SIDE CHAIN REMARK 500 14 TYR A 51 0.12 SIDE CHAIN REMARK 500 19 TYR A 51 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34354 RELATED DB: BMRB REMARK 900 TRUNCATED EVASIN-3 (TEV3 17-56) DBREF 6QJB A 17 56 UNP P0C8E8 EVA3_RHISA 37 76 SEQRES 1 A 40 PHE ASP VAL VAL SER CYS ASN LYS ASN CYS THR SER GLY SEQRES 2 A 40 GLN ASN GLU CYS PRO GLU GLY CYS PHE CYS GLY LEU LEU SEQRES 3 A 40 GLY GLN ASN LYS LYS GLY HIS CYS TYR LYS ILE ILE GLY SEQRES 4 A 40 ASN SHEET 1 AA1 3 ASP A 18 THR A 27 0 SHEET 2 AA1 3 LYS A 47 ILE A 54 -1 O CYS A 50 N LYS A 24 SHEET 3 AA1 3 PHE A 38 CYS A 39 -1 N PHE A 38 O TYR A 51 SSBOND 1 CYS A 22 CYS A 37 1555 1555 2.03 SSBOND 2 CYS A 26 CYS A 39 1555 1555 2.02 SSBOND 3 CYS A 33 CYS A 50 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1