HEADER SIGNALING PROTEIN 24-JAN-19 6QJI TITLE CRYSTAL STRUCTURE OF THE THIRD PDZ DOMAIN OF PSD-95 PROTEIN: SPACE TITLE 2 GROUP P3112 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISKS LARGE HOMOLOG 4; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: POSTSYNAPTIC DENSITY PROTEIN 95,PSD-95,SYNAPSE-ASSOCIATED COMPND 5 PROTEIN 90,SAP90; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DLG4, PSD95; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PDZ DOMAIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CAMARA-ARTIGAS REVDAT 3 24-JAN-24 6QJI 1 REMARK REVDAT 2 24-APR-19 6QJI 1 JRNL REVDAT 1 17-APR-19 6QJI 0 SPRSDE 17-APR-19 6QJI 5OIB JRNL AUTH A.CAMARA-ARTIGAS,J.MURCIANO-CALLES,J.C.MARTINEZ JRNL TITL CONFORMATIONAL CHANGES IN THE THIRD PDZ DOMAIN OF THE JRNL TITL 2 NEURONAL POSTSYNAPTIC DENSITY PROTEIN 95. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 381 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30988255 JRNL DOI 10.1107/S2059798319001980 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 156052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 7613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9737 - 4.6420 0.94 4683 242 0.2954 0.3706 REMARK 3 2 4.6420 - 3.6921 0.98 4896 239 0.1946 0.2279 REMARK 3 3 3.6921 - 3.2276 0.99 4939 260 0.1960 0.2047 REMARK 3 4 3.2276 - 2.9335 0.99 4935 228 0.1980 0.2203 REMARK 3 5 2.9335 - 2.7238 0.99 4946 244 0.2006 0.2548 REMARK 3 6 2.7238 - 2.5636 0.99 4998 172 0.2047 0.2716 REMARK 3 7 2.5636 - 2.4354 0.99 4969 235 0.2052 0.2532 REMARK 3 8 2.4354 - 2.3296 0.99 4898 276 0.1967 0.2529 REMARK 3 9 2.3296 - 2.2400 0.99 4886 295 0.1922 0.2314 REMARK 3 10 2.2400 - 2.1628 0.99 4939 281 0.2024 0.2458 REMARK 3 11 2.1628 - 2.0952 0.99 4973 220 0.1934 0.2470 REMARK 3 12 2.0952 - 2.0354 0.99 4974 223 0.1994 0.2385 REMARK 3 13 2.0354 - 1.9819 1.00 4935 269 0.1909 0.2610 REMARK 3 14 1.9819 - 1.9336 1.00 4903 264 0.2004 0.2288 REMARK 3 15 1.9336 - 1.8896 1.00 4995 242 0.2023 0.2708 REMARK 3 16 1.8896 - 1.8495 1.00 4983 250 0.2100 0.2620 REMARK 3 17 1.8495 - 1.8125 1.00 4984 260 0.2282 0.3051 REMARK 3 18 1.8125 - 1.7783 1.00 4923 258 0.2259 0.3283 REMARK 3 19 1.7783 - 1.7466 1.00 5050 254 0.2230 0.2892 REMARK 3 20 1.7466 - 1.7170 1.00 4880 294 0.2218 0.2764 REMARK 3 21 1.7170 - 1.6893 1.00 4987 242 0.2289 0.2759 REMARK 3 22 1.6893 - 1.6633 1.00 5010 238 0.2227 0.3057 REMARK 3 23 1.6633 - 1.6389 1.00 4941 282 0.2280 0.3026 REMARK 3 24 1.6389 - 1.6158 1.00 4980 270 0.2221 0.2907 REMARK 3 25 1.6158 - 1.5940 1.00 4952 306 0.2283 0.2727 REMARK 3 26 1.5940 - 1.5733 1.00 4948 268 0.2451 0.3523 REMARK 3 27 1.5733 - 1.5536 1.00 4960 208 0.2538 0.3334 REMARK 3 28 1.5536 - 1.5349 1.00 5041 269 0.2618 0.3285 REMARK 3 29 1.5349 - 1.5171 1.00 4953 260 0.2629 0.3210 REMARK 3 30 1.5171 - 1.5000 1.00 4978 264 0.2518 0.3054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QJI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80715 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 19.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3K82 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE, 30% PEG 4000, REMARK 280 PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.12167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 152.24333 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 152.24333 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.12167 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 673 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 685 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 674 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 669 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 305 REMARK 465 ASP A 306 REMARK 465 ILE A 307 REMARK 465 PRO A 308 REMARK 465 ARG A 309 REMARK 465 GLU A 310 REMARK 465 GLU A 401 REMARK 465 ALA A 402 REMARK 465 LYS A 403 REMARK 465 GLU B 305 REMARK 465 ASP B 306 REMARK 465 ILE B 307 REMARK 465 PRO B 308 REMARK 465 ARG B 309 REMARK 465 LYS B 403 REMARK 465 GLU C 305 REMARK 465 ASP C 306 REMARK 465 ILE C 307 REMARK 465 PRO C 308 REMARK 465 GLU C 401 REMARK 465 ALA C 402 REMARK 465 LYS C 403 REMARK 465 GLU D 305 REMARK 465 ASP D 306 REMARK 465 ILE D 307 REMARK 465 PRO D 308 REMARK 465 ARG D 309 REMARK 465 GLU D 401 REMARK 465 ALA D 402 REMARK 465 LYS D 403 REMARK 465 GLU E 305 REMARK 465 ASP E 306 REMARK 465 ILE E 307 REMARK 465 PRO E 308 REMARK 465 GLU F 305 REMARK 465 ASP F 306 REMARK 465 ILE F 307 REMARK 465 PRO F 308 REMARK 465 ARG F 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 332 -140.50 55.58 REMARK 500 GLU B 352 -32.45 -132.45 REMARK 500 GLU D 352 -36.90 -130.14 REMARK 500 GLU E 352 -34.07 -131.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5OIB RELATED DB: PDB REMARK 900 5OIB CONTAINS THE SAME PROTEIN WITH THOSE SIDE CHIANS WITH POOR REMARK 900 ELECTRON DENSITY TRUNCATED AT THE CB DBREF 6QJI A 305 403 UNP P78352 DLG4_HUMAN 305 403 DBREF 6QJI B 305 403 UNP P78352 DLG4_HUMAN 305 403 DBREF 6QJI C 305 403 UNP P78352 DLG4_HUMAN 305 403 DBREF 6QJI D 305 403 UNP P78352 DLG4_HUMAN 305 403 DBREF 6QJI E 305 403 UNP P78352 DLG4_HUMAN 305 403 DBREF 6QJI F 305 403 UNP P78352 DLG4_HUMAN 305 403 SEQRES 1 A 99 GLU ASP ILE PRO ARG GLU PRO ARG ARG ILE VAL ILE HIS SEQRES 2 A 99 ARG GLY SER THR GLY LEU GLY PHE ASN ILE VAL GLY GLY SEQRES 3 A 99 GLU ASP GLY GLU GLY ILE PHE ILE SER PHE ILE LEU ALA SEQRES 4 A 99 GLY GLY PRO ALA ASP LEU SER GLY GLU LEU ARG LYS GLY SEQRES 5 A 99 ASP GLN ILE LEU SER VAL ASN GLY VAL ASP LEU ARG ASN SEQRES 6 A 99 ALA SER HIS GLU GLN ALA ALA ILE ALA LEU LYS ASN ALA SEQRES 7 A 99 GLY GLN THR VAL THR ILE ILE ALA GLN TYR LYS PRO GLU SEQRES 8 A 99 GLU TYR SER ARG PHE GLU ALA LYS SEQRES 1 B 99 GLU ASP ILE PRO ARG GLU PRO ARG ARG ILE VAL ILE HIS SEQRES 2 B 99 ARG GLY SER THR GLY LEU GLY PHE ASN ILE VAL GLY GLY SEQRES 3 B 99 GLU ASP GLY GLU GLY ILE PHE ILE SER PHE ILE LEU ALA SEQRES 4 B 99 GLY GLY PRO ALA ASP LEU SER GLY GLU LEU ARG LYS GLY SEQRES 5 B 99 ASP GLN ILE LEU SER VAL ASN GLY VAL ASP LEU ARG ASN SEQRES 6 B 99 ALA SER HIS GLU GLN ALA ALA ILE ALA LEU LYS ASN ALA SEQRES 7 B 99 GLY GLN THR VAL THR ILE ILE ALA GLN TYR LYS PRO GLU SEQRES 8 B 99 GLU TYR SER ARG PHE GLU ALA LYS SEQRES 1 C 99 GLU ASP ILE PRO ARG GLU PRO ARG ARG ILE VAL ILE HIS SEQRES 2 C 99 ARG GLY SER THR GLY LEU GLY PHE ASN ILE VAL GLY GLY SEQRES 3 C 99 GLU ASP GLY GLU GLY ILE PHE ILE SER PHE ILE LEU ALA SEQRES 4 C 99 GLY GLY PRO ALA ASP LEU SER GLY GLU LEU ARG LYS GLY SEQRES 5 C 99 ASP GLN ILE LEU SER VAL ASN GLY VAL ASP LEU ARG ASN SEQRES 6 C 99 ALA SER HIS GLU GLN ALA ALA ILE ALA LEU LYS ASN ALA SEQRES 7 C 99 GLY GLN THR VAL THR ILE ILE ALA GLN TYR LYS PRO GLU SEQRES 8 C 99 GLU TYR SER ARG PHE GLU ALA LYS SEQRES 1 D 99 GLU ASP ILE PRO ARG GLU PRO ARG ARG ILE VAL ILE HIS SEQRES 2 D 99 ARG GLY SER THR GLY LEU GLY PHE ASN ILE VAL GLY GLY SEQRES 3 D 99 GLU ASP GLY GLU GLY ILE PHE ILE SER PHE ILE LEU ALA SEQRES 4 D 99 GLY GLY PRO ALA ASP LEU SER GLY GLU LEU ARG LYS GLY SEQRES 5 D 99 ASP GLN ILE LEU SER VAL ASN GLY VAL ASP LEU ARG ASN SEQRES 6 D 99 ALA SER HIS GLU GLN ALA ALA ILE ALA LEU LYS ASN ALA SEQRES 7 D 99 GLY GLN THR VAL THR ILE ILE ALA GLN TYR LYS PRO GLU SEQRES 8 D 99 GLU TYR SER ARG PHE GLU ALA LYS SEQRES 1 E 99 GLU ASP ILE PRO ARG GLU PRO ARG ARG ILE VAL ILE HIS SEQRES 2 E 99 ARG GLY SER THR GLY LEU GLY PHE ASN ILE VAL GLY GLY SEQRES 3 E 99 GLU ASP GLY GLU GLY ILE PHE ILE SER PHE ILE LEU ALA SEQRES 4 E 99 GLY GLY PRO ALA ASP LEU SER GLY GLU LEU ARG LYS GLY SEQRES 5 E 99 ASP GLN ILE LEU SER VAL ASN GLY VAL ASP LEU ARG ASN SEQRES 6 E 99 ALA SER HIS GLU GLN ALA ALA ILE ALA LEU LYS ASN ALA SEQRES 7 E 99 GLY GLN THR VAL THR ILE ILE ALA GLN TYR LYS PRO GLU SEQRES 8 E 99 GLU TYR SER ARG PHE GLU ALA LYS SEQRES 1 F 99 GLU ASP ILE PRO ARG GLU PRO ARG ARG ILE VAL ILE HIS SEQRES 2 F 99 ARG GLY SER THR GLY LEU GLY PHE ASN ILE VAL GLY GLY SEQRES 3 F 99 GLU ASP GLY GLU GLY ILE PHE ILE SER PHE ILE LEU ALA SEQRES 4 F 99 GLY GLY PRO ALA ASP LEU SER GLY GLU LEU ARG LYS GLY SEQRES 5 F 99 ASP GLN ILE LEU SER VAL ASN GLY VAL ASP LEU ARG ASN SEQRES 6 F 99 ALA SER HIS GLU GLN ALA ALA ILE ALA LEU LYS ASN ALA SEQRES 7 F 99 GLY GLN THR VAL THR ILE ILE ALA GLN TYR LYS PRO GLU SEQRES 8 F 99 GLU TYR SER ARG PHE GLU ALA LYS HET SO4 A 501 5 HET SO4 B 501 5 HET SO4 B 502 5 HET SO4 C 501 5 HET SO4 C 502 5 HET SO4 D 501 5 HET SO4 E 501 5 HET SO4 F 501 5 HETNAM SO4 SULFATE ION FORMUL 7 SO4 8(O4 S 2-) FORMUL 15 HOH *474(H2 O) HELIX 1 AA1 GLY A 345 SER A 350 1 6 HELIX 2 AA2 SER A 371 ASN A 381 1 11 HELIX 3 AA3 LYS A 393 PHE A 400 1 8 HELIX 4 AA4 GLY B 345 SER B 350 1 6 HELIX 5 AA5 SER B 371 ASN B 381 1 11 HELIX 6 AA6 LYS B 393 ALA B 402 1 10 HELIX 7 AA7 GLY C 345 SER C 350 1 6 HELIX 8 AA8 SER C 371 ASN C 381 1 11 HELIX 9 AA9 LYS C 393 PHE C 400 1 8 HELIX 10 AB1 GLY D 345 SER D 350 1 6 HELIX 11 AB2 SER D 371 ALA D 382 1 12 HELIX 12 AB3 LYS D 393 PHE D 400 1 8 HELIX 13 AB4 GLY E 345 SER E 350 1 6 HELIX 14 AB5 SER E 371 ASN E 381 1 11 HELIX 15 AB6 LYS E 393 ALA E 402 1 10 HELIX 16 AB7 GLY F 345 SER F 350 1 6 HELIX 17 AB8 SER F 371 ASN F 381 1 11 HELIX 18 AB9 LYS F 393 GLU F 401 1 9 SHEET 1 AA1 5 ARG A 312 HIS A 317 0 SHEET 2 AA1 5 THR A 385 TYR A 392 -1 O ILE A 388 N ILE A 314 SHEET 3 AA1 5 ASP A 357 VAL A 362 -1 N GLN A 358 O GLN A 391 SHEET 4 AA1 5 ILE A 336 ILE A 341 -1 N ILE A 336 O ILE A 359 SHEET 5 AA1 5 PHE A 325 GLY A 329 -1 N VAL A 328 O PHE A 337 SHEET 1 AA2 4 ARG A 312 HIS A 317 0 SHEET 2 AA2 4 THR A 385 TYR A 392 -1 O ILE A 388 N ILE A 314 SHEET 3 AA2 4 ASP A 357 VAL A 362 -1 N GLN A 358 O GLN A 391 SHEET 4 AA2 4 VAL A 365 ASP A 366 -1 O VAL A 365 N VAL A 362 SHEET 1 AA3 5 ARG B 312 HIS B 317 0 SHEET 2 AA3 5 THR B 385 TYR B 392 -1 O ILE B 388 N ILE B 314 SHEET 3 AA3 5 ASP B 357 VAL B 362 -1 N GLN B 358 O GLN B 391 SHEET 4 AA3 5 GLU B 334 ILE B 341 -1 N ILE B 336 O ILE B 359 SHEET 5 AA3 5 PHE B 325 GLU B 331 -1 N VAL B 328 O PHE B 337 SHEET 1 AA4 4 ARG B 312 HIS B 317 0 SHEET 2 AA4 4 THR B 385 TYR B 392 -1 O ILE B 388 N ILE B 314 SHEET 3 AA4 4 ASP B 357 VAL B 362 -1 N GLN B 358 O GLN B 391 SHEET 4 AA4 4 VAL B 365 ASP B 366 -1 O VAL B 365 N VAL B 362 SHEET 1 AA5 4 ARG C 312 HIS C 317 0 SHEET 2 AA5 4 THR C 385 TYR C 392 -1 O ILE C 388 N ILE C 314 SHEET 3 AA5 4 ASP C 357 VAL C 362 -1 N GLN C 358 O GLN C 391 SHEET 4 AA5 4 VAL C 365 ASP C 366 -1 O VAL C 365 N VAL C 362 SHEET 1 AA6 2 PHE C 325 GLU C 331 0 SHEET 2 AA6 2 GLU C 334 ILE C 341 -1 O GLU C 334 N GLU C 331 SHEET 1 AA7 4 ARG D 312 HIS D 317 0 SHEET 2 AA7 4 THR D 385 TYR D 392 -1 O ILE D 388 N ILE D 314 SHEET 3 AA7 4 ASP D 357 VAL D 362 -1 N GLN D 358 O GLN D 391 SHEET 4 AA7 4 VAL D 365 ASP D 366 -1 O VAL D 365 N VAL D 362 SHEET 1 AA8 2 PHE D 325 GLY D 329 0 SHEET 2 AA8 2 ILE D 336 ILE D 341 -1 O PHE D 337 N VAL D 328 SHEET 1 AA9 4 ARG E 312 HIS E 317 0 SHEET 2 AA9 4 THR E 385 TYR E 392 -1 O ILE E 388 N ILE E 314 SHEET 3 AA9 4 ASP E 357 VAL E 362 -1 N GLN E 358 O GLN E 391 SHEET 4 AA9 4 VAL E 365 ASP E 366 -1 O VAL E 365 N VAL E 362 SHEET 1 AB1 2 PHE E 325 GLY E 329 0 SHEET 2 AB1 2 ILE E 336 ILE E 341 -1 O PHE E 337 N VAL E 328 SHEET 1 AB2 4 ARG F 312 HIS F 317 0 SHEET 2 AB2 4 THR F 385 TYR F 392 -1 O ILE F 388 N ILE F 314 SHEET 3 AB2 4 ASP F 357 VAL F 362 -1 N GLN F 358 O GLN F 391 SHEET 4 AB2 4 VAL F 365 ASP F 366 -1 O VAL F 365 N VAL F 362 SHEET 1 AB3 2 PHE F 325 GLY F 329 0 SHEET 2 AB3 2 ILE F 336 ILE F 341 -1 O PHE F 337 N VAL F 328 SITE 1 AC1 10 ARG A 318 GLY A 322 LYS A 380 HOH A 612 SITE 2 AC1 10 HOH A 624 HOH A 634 HOH A 657 GLU B 331 SITE 3 AC1 10 HOH B 602 HOH B 619 SITE 1 AC2 6 HIS B 372 GLU B 373 HOH B 601 HOH B 604 SITE 2 AC2 6 GLU C 396 HOH C 645 SITE 1 AC3 8 ARG B 318 GLY B 322 LYS B 380 HOH B 647 SITE 2 AC3 8 HOH B 654 HOH B 657 GLU C 331 HOH C 605 SITE 1 AC4 5 HIS C 372 GLU C 373 HOH C 606 HOH C 615 SITE 2 AC4 5 GLU E 396 SITE 1 AC5 3 ARG C 354 LYS C 355 ARG F 313 SITE 1 AC6 3 ARG D 313 ARG E 354 LYS E 355 SITE 1 AC7 5 THR D 385 HOH D 619 ARG E 309 ARG E 354 SITE 2 AC7 5 HOH E 632 SITE 1 AC8 6 ARG A 313 ILE F 341 ARG F 354 LYS F 355 SITE 2 AC8 6 HOH F 603 HOH F 610 CRYST1 61.970 61.970 228.365 90.00 90.00 120.00 P 31 1 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016137 0.009317 0.000000 0.00000 SCALE2 0.000000 0.018633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004379 0.00000