data_6QJP # _entry.id 6QJP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.302 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6QJP WWPDB D_1292100292 EMDB EMD-4565 # _pdbx_database_related.db_name EMDB _pdbx_database_related.details . _pdbx_database_related.db_id EMD-4565 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6QJP _pdbx_database_status.recvd_initial_deposition_date 2019-01-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, W.' 1 0000-0002-3011-9956 'Falcon, B.' 2 0000-0002-8176-2618 'Murzin, A.G.' 3 ? 'Fan, J.' 4 ? 'Crowther, R.A.' 5 ? 'Goedert, M.' 6 0000-0002-5214-7886 'Scheres, S.H.W.' 7 0000-0002-0462-6540 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Elife _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2050-084X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Heparin-induced tau filaments are polymorphic and differ from those in Alzheimer's and Pick's diseases. ; _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.7554/eLife.43584 _citation.pdbx_database_id_PubMed 30720432 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, W.' 1 ? primary 'Falcon, B.' 2 ? primary 'Murzin, A.G.' 3 ? primary 'Fan, J.' 4 ? primary 'Crowther, R.A.' 5 ? primary 'Goedert, M.' 6 ? primary 'Scheres, S.H.' 7 0000-0002-0462-6540 # _cell.angle_alpha 90 _cell.angle_alpha_esd ? _cell.angle_beta 90 _cell.angle_beta_esd ? _cell.angle_gamma 90 _cell.angle_gamma_esd ? _cell.entry_id 6QJP _cell.details ? _cell.formula_units_Z ? _cell.length_a 1 _cell.length_a_esd ? _cell.length_b 1 _cell.length_b_esd ? _cell.length_c 1 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Microtubule-associated protein tau' _entity.formula_weight 5189.081 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Neurofibrillary tangle protein,Paired helical filament-tau,PHF-tau' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KVQIINKKLDLSNVQSKCGSKDNIKHVPGGGSVQIVYKPVDLSKVTSK _entity_poly.pdbx_seq_one_letter_code_can KVQIINKKLDLSNVQSKCGSKDNIKHVPGGGSVQIVYKPVDLSKVTSK _entity_poly.pdbx_strand_id A,C,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 GLN n 1 4 ILE n 1 5 ILE n 1 6 ASN n 1 7 LYS n 1 8 LYS n 1 9 LEU n 1 10 ASP n 1 11 LEU n 1 12 SER n 1 13 ASN n 1 14 VAL n 1 15 GLN n 1 16 SER n 1 17 LYS n 1 18 CYS n 1 19 GLY n 1 20 SER n 1 21 LYS n 1 22 ASP n 1 23 ASN n 1 24 ILE n 1 25 LYS n 1 26 HIS n 1 27 VAL n 1 28 PRO n 1 29 GLY n 1 30 GLY n 1 31 GLY n 1 32 SER n 1 33 VAL n 1 34 GLN n 1 35 ILE n 1 36 VAL n 1 37 TYR n 1 38 LYS n 1 39 PRO n 1 40 VAL n 1 41 ASP n 1 42 LEU n 1 43 SER n 1 44 LYS n 1 45 VAL n 1 46 THR n 1 47 SER n 1 48 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 48 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MAPT, MAPTL, MTBT1, TAU' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pRK172 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TAU_HUMAN _struct_ref.pdbx_db_accession P10636 _struct_ref.pdbx_db_isoform P10636-8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KVQIINKKLDLSNVQSKCGSKDNIKHVPGGGSVQIVYKPVDLSKVTSK _struct_ref.pdbx_align_begin 274 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6QJP A 1 ? 48 ? P10636 274 ? 321 ? 274 321 2 1 6QJP C 1 ? 48 ? P10636 274 ? 321 ? 274 321 3 1 6QJP B 1 ? 48 ? P10636 274 ? 321 ? 274 321 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6QJP _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 6QJP _struct.title 'Cryo-EM structure of heparin-induced 2N4R tau jagged filaments' _struct.pdbx_descriptor 'Microtubule-associated protein tau' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6QJP _struct_keywords.text 'Recombinant tau protein, heparin, filament, cross-beta structure, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL B 2 ? GLN B 15 ? VAL C 275 GLN C 288 AA1 2 VAL A 2 ? GLN A 15 ? VAL A 275 GLN A 288 AA1 3 VAL C 2 ? GLN C 15 ? VAL B 275 GLN B 288 AA2 1 VAL B 33 ? TYR B 37 ? VAL C 306 TYR C 310 AA2 2 VAL A 33 ? TYR A 37 ? VAL A 306 TYR A 310 AA2 3 VAL C 33 ? TYR C 37 ? VAL B 306 TYR B 310 AA3 1 VAL B 40 ? VAL B 45 ? VAL C 313 VAL C 318 AA3 2 VAL A 40 ? VAL A 45 ? VAL A 313 VAL A 318 AA3 3 VAL C 40 ? VAL C 45 ? VAL B 313 VAL B 318 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ASP B 10 ? O ASP C 283 N LEU A 9 ? N LEU A 282 AA1 2 3 N ASP A 10 ? N ASP A 283 O LEU C 9 ? O LEU B 282 AA2 1 2 O TYR B 37 ? O TYR C 310 N VAL A 36 ? N VAL A 309 AA2 2 3 N TYR A 37 ? N TYR A 310 O VAL C 36 ? O VAL B 309 AA3 1 2 O LYS B 44 ? O LYS C 317 N SER A 43 ? N SER A 316 AA3 2 3 N LYS A 44 ? N LYS A 317 O SER C 43 ? O SER B 316 # _atom_sites.entry_id 6QJP _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 274 274 LYS LYS A . n A 1 2 VAL 2 275 275 VAL VAL A . n A 1 3 GLN 3 276 276 GLN GLN A . n A 1 4 ILE 4 277 277 ILE ILE A . n A 1 5 ILE 5 278 278 ILE ILE A . n A 1 6 ASN 6 279 279 ASN ASN A . n A 1 7 LYS 7 280 280 LYS LYS A . n A 1 8 LYS 8 281 281 LYS LYS A . n A 1 9 LEU 9 282 282 LEU LEU A . n A 1 10 ASP 10 283 283 ASP ASP A . n A 1 11 LEU 11 284 284 LEU LEU A . n A 1 12 SER 12 285 285 SER SER A . n A 1 13 ASN 13 286 286 ASN ASN A . n A 1 14 VAL 14 287 287 VAL VAL A . n A 1 15 GLN 15 288 288 GLN GLN A . n A 1 16 SER 16 289 289 SER SER A . n A 1 17 LYS 17 290 290 LYS LYS A . n A 1 18 CYS 18 291 ? ? ? A . n A 1 19 GLY 19 292 ? ? ? A . n A 1 20 SER 20 293 ? ? ? A . n A 1 21 LYS 21 294 ? ? ? A . n A 1 22 ASP 22 295 ? ? ? A . n A 1 23 ASN 23 296 ? ? ? A . n A 1 24 ILE 24 297 ? ? ? A . n A 1 25 LYS 25 298 ? ? ? A . n A 1 26 HIS 26 299 ? ? ? A . n A 1 27 VAL 27 300 ? ? ? A . n A 1 28 PRO 28 301 ? ? ? A . n A 1 29 GLY 29 302 ? ? ? A . n A 1 30 GLY 30 303 ? ? ? A . n A 1 31 GLY 31 304 304 GLY GLY A . n A 1 32 SER 32 305 305 SER SER A . n A 1 33 VAL 33 306 306 VAL VAL A . n A 1 34 GLN 34 307 307 GLN GLN A . n A 1 35 ILE 35 308 308 ILE ILE A . n A 1 36 VAL 36 309 309 VAL VAL A . n A 1 37 TYR 37 310 310 TYR TYR A . n A 1 38 LYS 38 311 311 LYS LYS A . n A 1 39 PRO 39 312 312 PRO PRO A . n A 1 40 VAL 40 313 313 VAL VAL A . n A 1 41 ASP 41 314 314 ASP ASP A . n A 1 42 LEU 42 315 315 LEU LEU A . n A 1 43 SER 43 316 316 SER SER A . n A 1 44 LYS 44 317 317 LYS LYS A . n A 1 45 VAL 45 318 318 VAL VAL A . n A 1 46 THR 46 319 319 THR THR A . n A 1 47 SER 47 320 320 SER SER A . n A 1 48 LYS 48 321 321 LYS LYS A . n B 1 1 LYS 1 274 274 LYS LYS C . n B 1 2 VAL 2 275 275 VAL VAL C . n B 1 3 GLN 3 276 276 GLN GLN C . n B 1 4 ILE 4 277 277 ILE ILE C . n B 1 5 ILE 5 278 278 ILE ILE C . n B 1 6 ASN 6 279 279 ASN ASN C . n B 1 7 LYS 7 280 280 LYS LYS C . n B 1 8 LYS 8 281 281 LYS LYS C . n B 1 9 LEU 9 282 282 LEU LEU C . n B 1 10 ASP 10 283 283 ASP ASP C . n B 1 11 LEU 11 284 284 LEU LEU C . n B 1 12 SER 12 285 285 SER SER C . n B 1 13 ASN 13 286 286 ASN ASN C . n B 1 14 VAL 14 287 287 VAL VAL C . n B 1 15 GLN 15 288 288 GLN GLN C . n B 1 16 SER 16 289 289 SER SER C . n B 1 17 LYS 17 290 290 LYS LYS C . n B 1 18 CYS 18 291 ? ? ? C . n B 1 19 GLY 19 292 ? ? ? C . n B 1 20 SER 20 293 ? ? ? C . n B 1 21 LYS 21 294 ? ? ? C . n B 1 22 ASP 22 295 ? ? ? C . n B 1 23 ASN 23 296 ? ? ? C . n B 1 24 ILE 24 297 ? ? ? C . n B 1 25 LYS 25 298 ? ? ? C . n B 1 26 HIS 26 299 ? ? ? C . n B 1 27 VAL 27 300 ? ? ? C . n B 1 28 PRO 28 301 ? ? ? C . n B 1 29 GLY 29 302 ? ? ? C . n B 1 30 GLY 30 303 ? ? ? C . n B 1 31 GLY 31 304 304 GLY GLY C . n B 1 32 SER 32 305 305 SER SER C . n B 1 33 VAL 33 306 306 VAL VAL C . n B 1 34 GLN 34 307 307 GLN GLN C . n B 1 35 ILE 35 308 308 ILE ILE C . n B 1 36 VAL 36 309 309 VAL VAL C . n B 1 37 TYR 37 310 310 TYR TYR C . n B 1 38 LYS 38 311 311 LYS LYS C . n B 1 39 PRO 39 312 312 PRO PRO C . n B 1 40 VAL 40 313 313 VAL VAL C . n B 1 41 ASP 41 314 314 ASP ASP C . n B 1 42 LEU 42 315 315 LEU LEU C . n B 1 43 SER 43 316 316 SER SER C . n B 1 44 LYS 44 317 317 LYS LYS C . n B 1 45 VAL 45 318 318 VAL VAL C . n B 1 46 THR 46 319 319 THR THR C . n B 1 47 SER 47 320 320 SER SER C . n B 1 48 LYS 48 321 321 LYS LYS C . n C 1 1 LYS 1 274 274 LYS LYS B . n C 1 2 VAL 2 275 275 VAL VAL B . n C 1 3 GLN 3 276 276 GLN GLN B . n C 1 4 ILE 4 277 277 ILE ILE B . n C 1 5 ILE 5 278 278 ILE ILE B . n C 1 6 ASN 6 279 279 ASN ASN B . n C 1 7 LYS 7 280 280 LYS LYS B . n C 1 8 LYS 8 281 281 LYS LYS B . n C 1 9 LEU 9 282 282 LEU LEU B . n C 1 10 ASP 10 283 283 ASP ASP B . n C 1 11 LEU 11 284 284 LEU LEU B . n C 1 12 SER 12 285 285 SER SER B . n C 1 13 ASN 13 286 286 ASN ASN B . n C 1 14 VAL 14 287 287 VAL VAL B . n C 1 15 GLN 15 288 288 GLN GLN B . n C 1 16 SER 16 289 289 SER SER B . n C 1 17 LYS 17 290 290 LYS LYS B . n C 1 18 CYS 18 291 ? ? ? B . n C 1 19 GLY 19 292 ? ? ? B . n C 1 20 SER 20 293 ? ? ? B . n C 1 21 LYS 21 294 ? ? ? B . n C 1 22 ASP 22 295 ? ? ? B . n C 1 23 ASN 23 296 ? ? ? B . n C 1 24 ILE 24 297 ? ? ? B . n C 1 25 LYS 25 298 ? ? ? B . n C 1 26 HIS 26 299 ? ? ? B . n C 1 27 VAL 27 300 ? ? ? B . n C 1 28 PRO 28 301 ? ? ? B . n C 1 29 GLY 29 302 ? ? ? B . n C 1 30 GLY 30 303 ? ? ? B . n C 1 31 GLY 31 304 304 GLY GLY B . n C 1 32 SER 32 305 305 SER SER B . n C 1 33 VAL 33 306 306 VAL VAL B . n C 1 34 GLN 34 307 307 GLN GLN B . n C 1 35 ILE 35 308 308 ILE ILE B . n C 1 36 VAL 36 309 309 VAL VAL B . n C 1 37 TYR 37 310 310 TYR TYR B . n C 1 38 LYS 38 311 311 LYS LYS B . n C 1 39 PRO 39 312 312 PRO PRO B . n C 1 40 VAL 40 313 313 VAL VAL B . n C 1 41 ASP 41 314 314 ASP ASP B . n C 1 42 LEU 42 315 315 LEU LEU B . n C 1 43 SER 43 316 316 SER SER B . n C 1 44 LYS 44 317 317 LYS LYS B . n C 1 45 VAL 45 318 318 VAL VAL B . n C 1 46 THR 46 319 319 THR THR B . n C 1 47 SER 47 320 320 SER SER B . n C 1 48 LYS 48 321 321 LYS LYS B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6370 ? 1 MORE -17 ? 1 'SSA (A^2)' 7020 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2019-02-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _em_3d_fitting.entry_id 6QJP _em_3d_fitting.id 1 _em_3d_fitting.details ;A stack of three consecutive monomers was refined to preserve nearest-neighbour interactions for the middle chain. Side-chain clashes were detected using MOLPROBITY, and corrected by iterative cycles of real-space refinement in COOT and Fourier-space refinement in REFMAC and PHENIX. For each refined structure, separate model refinements were performed against a single half-map, and the resulting model was compared to the other half-map to confirm the absence of overfitting. ; _em_3d_fitting.overall_b_value 33.2 _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria 'Fourier shell correlation' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6QJP _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details 'We performed three rounds of 3D auto-refinement.' _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 6 _em_3d_reconstruction.num_particles 35695 _em_3d_reconstruction.resolution 3.5 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details '20 mM Tris, pH 7.4, 100mM NaCl' _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'Recombinant tau protein was induced into filaments by incubation with heparin at 37 C for 3 days' _em_entity_assembly.name 'heparin-induced 2N4R tau jagged filaments' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6QJP _em_image_scans.id 1 _em_image_scans.dimension_height 4096 _em_image_scans.dimension_width 4096 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 14 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6QJP _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50.0 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI POLARA 300' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.0 _em_imaging.nominal_defocus_max 2800 _em_imaging.nominal_defocus_min 1700 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'GATAN LIQUID NITROGEN' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'Blot force: -12 ; Blot time: 4s' _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6QJP _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6QJP _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 311 ? ? 54.95 72.86 2 1 LYS C 311 ? ? 54.94 72.84 3 1 LYS B 311 ? ? 54.99 72.86 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A CYS 291 ? A CYS 18 2 1 Y 1 A GLY 292 ? A GLY 19 3 1 Y 1 A SER 293 ? A SER 20 4 1 Y 1 A LYS 294 ? A LYS 21 5 1 Y 1 A ASP 295 ? A ASP 22 6 1 Y 1 A ASN 296 ? A ASN 23 7 1 Y 1 A ILE 297 ? A ILE 24 8 1 Y 1 A LYS 298 ? A LYS 25 9 1 Y 1 A HIS 299 ? A HIS 26 10 1 Y 1 A VAL 300 ? A VAL 27 11 1 Y 1 A PRO 301 ? A PRO 28 12 1 Y 1 A GLY 302 ? A GLY 29 13 1 Y 1 A GLY 303 ? A GLY 30 14 1 Y 1 C CYS 291 ? B CYS 18 15 1 Y 1 C GLY 292 ? B GLY 19 16 1 Y 1 C SER 293 ? B SER 20 17 1 Y 1 C LYS 294 ? B LYS 21 18 1 Y 1 C ASP 295 ? B ASP 22 19 1 Y 1 C ASN 296 ? B ASN 23 20 1 Y 1 C ILE 297 ? B ILE 24 21 1 Y 1 C LYS 298 ? B LYS 25 22 1 Y 1 C HIS 299 ? B HIS 26 23 1 Y 1 C VAL 300 ? B VAL 27 24 1 Y 1 C PRO 301 ? B PRO 28 25 1 Y 1 C GLY 302 ? B GLY 29 26 1 Y 1 C GLY 303 ? B GLY 30 27 1 Y 1 B CYS 291 ? C CYS 18 28 1 Y 1 B GLY 292 ? C GLY 19 29 1 Y 1 B SER 293 ? C SER 20 30 1 Y 1 B LYS 294 ? C LYS 21 31 1 Y 1 B ASP 295 ? C ASP 22 32 1 Y 1 B ASN 296 ? C ASN 23 33 1 Y 1 B ILE 297 ? C ILE 24 34 1 Y 1 B LYS 298 ? C LYS 25 35 1 Y 1 B HIS 299 ? C HIS 26 36 1 Y 1 B VAL 300 ? C VAL 27 37 1 Y 1 B PRO 301 ? C PRO 28 38 1 Y 1 B GLY 302 ? C GLY 29 39 1 Y 1 B GLY 303 ? C GLY 30 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 0.02 mol/L Tris 'tris(hydroxymethyl)aminomethane' 1 2 0.1 mol/L NaCl 'sodium chloride' # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere ? _em_crystal_formation.details ? _em_crystal_formation.instrument ? _em_crystal_formation.lipid_mixture ? _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature ? _em_crystal_formation.time ? _em_crystal_formation.time_unit ? # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details 'Aligned, non-dose-weighted micrographs were used to estimate the contrast transfer function (CTF) using CTFFIND4.1' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 45.85 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid pRK172 _em_entity_assembly_recombinant.strain 'BL21 (DE3)' # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -2.03 _em_helical_entity.axial_rise_per_subunit 4.70 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ;Movie frames were gain-corrected, aligned, dose weighted and then summed into a single micrograph using MOTIONCOR2 (Zheng et al., 2017). ; # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 48 _em_image_recording.average_exposure_time 1.0 _em_image_recording.details 'Images were collected in movie-mode at 30 frames per second' _em_image_recording.detector_mode INTEGRATING _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 717 # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details 'Manually picked' _em_particle_selection.method ? _em_particle_selection.num_particles_selected 44456 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? RELION 3.0 1 ? ? 2 'IMAGE ACQUISITION' ? EPU 1.5.0.1243REL ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? RELION 4.1 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? Coot 0.8.9.1 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 11 CLASSIFICATION ? RELION 3.0 1 ? ? 12 RECONSTRUCTION ? RELION 3.0 1 ? ? 13 'MODEL REFINEMENT' ? REFMAC 5.8.0236 ? 1 ? 14 'MODEL REFINEMENT' ? PHENIX dev-2919-000 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 2.0 _em_specimen.details ;Recombinant tau protein was induced into filaments by incubation with heparin at 37 C for 3 days. The filaments were pronase-treated before making Cryo-grids. ; _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Medical Research Council (United Kingdom)' 'United Kingdom' MC_UP_A025_1013 1 'Medical Research Council (United Kingdom)' 'United Kingdom' MC_U105184291 2 # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'assay for oligomerization' 'We used Thioflavin T fluorescence to check the kinetic assays of the filament assembly.' 2 1 microscopy 'We used negative-stain electron microscopy to check the morphology of assembled filaments.' #