HEADER TRANSCRIPTION 27-JAN-19 6QJX TITLE TETR(D) T103A MUTANT IN COMPLEX WITH MINOCYCLINE AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRACYCLINE REPRESSOR PROTEIN CLASS D; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: STOP CODON AT 209, C-TERMINUS REMOVED FOR BETTER COMPND 7 CRYSTALLIZATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: TETR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PWH1950 KEYWDS TRANSCRIPTION REGULATION, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.HINRICHS,G.J.PALM,L.BERNDT,B.GIRBARDT REVDAT 3 24-JAN-24 6QJX 1 COMPND HETNAM REVDAT 2 18-MAR-20 6QJX 1 JRNL REVDAT 1 21-AUG-19 6QJX 0 JRNL AUTH G.J.PALM,I.BUCHHOLZ,S.WERTEN,B.GIRBARDT,L.BERNDT,M.DELCEA, JRNL AUTH 2 W.HINRICHS JRNL TITL THERMODYNAMICS, COOPERATIVITY AND STABILITY OF THE JRNL TITL 2 TETRACYCLINE REPRESSOR (TETR) UPON TETRACYCLINE BINDING. JRNL REF BIOCHIM BIOPHYS ACTA V.1868 40404 2020 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1878-1454 JRNL PMID 32114262 JRNL DOI 10.1016/J.BBAPAP.2020.140404 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.WERTEN,J.SCHNEIDER,G.J.PALM,W.HINRICHS REMARK 1 TITL MODULAR ORGANISATION OF INDUCER RECOGNITION AND ALLOSTERY IN REMARK 1 TITL 2 THE TETRACYCLINE REPRESSOR. REMARK 1 REF FEBS J. V. 283 2102 2016 REMARK 1 REFN ISSN 1742-4658 REMARK 1 PMID 27028290 REMARK 1 DOI 10.1111/FEBS.13723 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 10762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1148 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 769 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.4010 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.4180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1555 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.27000 REMARK 3 B22 (A**2) : 3.27000 REMARK 3 B33 (A**2) : -6.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.326 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.246 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.235 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.993 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1665 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1541 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2272 ; 1.921 ; 1.705 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3548 ; 1.411 ; 1.614 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 195 ; 7.169 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;35.857 ;21.458 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 280 ;18.283 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.894 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 214 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1885 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 360 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 784 ; 2.965 ; 3.786 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 783 ; 2.957 ; 3.786 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 979 ; 4.503 ; 5.670 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 980 ; 4.501 ; 5.670 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 879 ; 2.737 ; 4.147 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 880 ; 2.735 ; 4.147 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1293 ; 4.332 ; 6.116 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1977 ; 7.094 ;45.743 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1973 ; 7.091 ;45.721 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 45 REMARK 3 RESIDUE RANGE : A 46 A 63 REMARK 3 RESIDUE RANGE : A 303 A 306 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9153 28.1564 13.7334 REMARK 3 T TENSOR REMARK 3 T11: 0.0666 T22: 0.1775 REMARK 3 T33: 0.2214 T12: -0.0357 REMARK 3 T13: -0.0315 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.8486 L22: 0.1855 REMARK 3 L33: 4.1442 L12: -0.2101 REMARK 3 L13: 2.5520 L23: 0.0232 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: 0.0511 S13: 0.1295 REMARK 3 S21: 0.0943 S22: 0.0121 S23: -0.0876 REMARK 3 S31: 0.1592 S32: 0.0639 S33: 0.0117 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 153 REMARK 3 RESIDUE RANGE : A 180 A 208 REMARK 3 RESIDUE RANGE : A 301 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6739 32.6006 40.2327 REMARK 3 T TENSOR REMARK 3 T11: 0.1549 T22: 0.1311 REMARK 3 T33: 0.2670 T12: 0.1351 REMARK 3 T13: 0.0351 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.9091 L22: 0.4849 REMARK 3 L33: 3.2590 L12: 0.6521 REMARK 3 L13: 0.5906 L23: 0.2122 REMARK 3 S TENSOR REMARK 3 S11: 0.0925 S12: 0.1316 S13: 0.1041 REMARK 3 S21: 0.0882 S22: 0.1023 S23: 0.1071 REMARK 3 S31: -0.1064 S32: -0.1147 S33: -0.1949 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 166 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 49.8628 19.8948 37.1729 REMARK 3 T TENSOR REMARK 3 T11: 0.2178 T22: 0.1663 REMARK 3 T33: 0.2411 T12: 0.1700 REMARK 3 T13: 0.0059 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 12.7825 L22: 0.5051 REMARK 3 L33: 0.1394 L12: -2.4801 REMARK 3 L13: -1.0561 L23: 0.2296 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: 0.3403 S13: 0.5050 REMARK 3 S21: 0.0728 S22: -0.0053 S23: -0.0932 REMARK 3 S31: 0.0771 S32: 0.0251 S33: 0.0372 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6QJX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.950000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11944 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 57.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 6.850 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2TCT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PRECIPITANT: 0.1 M MES PH 6.5, 24% PEG REMARK 280 400, 70 MM MGCL2. PROTEIN: 14.55 MG/ML PROTEIN IN 100MM NACL, 50 REMARK 280 MM TRIS BUFFER, PH 8.0, WITH 2MM MINOTC, 0.38 UL 3M MGCL2. REMARK 280 PRECIPITANT/PROTEIN 1/4., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.90500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 33.90500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.08000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.90500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.04000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.90500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 135.12000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.90500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 135.12000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.90500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.04000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 33.90500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 33.90500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.08000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 33.90500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 33.90500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 90.08000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 33.90500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 135.12000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 33.90500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 45.04000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 33.90500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 45.04000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 33.90500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 135.12000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 33.90500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 33.90500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 90.08000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -129.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.81000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 67.81000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 425 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 154 REMARK 465 LEU A 155 REMARK 465 THR A 156 REMARK 465 ASP A 157 REMARK 465 ARG A 158 REMARK 465 PRO A 159 REMARK 465 ALA A 160 REMARK 465 ALA A 161 REMARK 465 PRO A 162 REMARK 465 ASP A 163 REMARK 465 GLU A 164 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 153 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 105 95.37 -45.06 REMARK 500 LEU A 204 -120.40 60.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MIY A 301 O6 REMARK 620 2 MIY A 301 O6 3.6 REMARK 620 3 MIY A 301 O5 83.3 85.3 REMARK 620 4 MIY A 301 O5 71.4 75.0 46.7 REMARK 620 5 HOH A 401 O 81.6 84.6 87.3 41.8 REMARK 620 6 HOH A 405 O 103.3 101.1 73.9 120.5 159.7 REMARK 620 7 HOH A 417 O 165.5 165.6 83.7 103.8 104.2 66.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MIY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 DBREF 6QJX A 2 208 UNP P0ACT4 TETR4_ECOLX 2 208 SEQADV 6QJX SER A 2 UNP P0ACT4 ALA 2 ENGINEERED MUTATION SEQADV 6QJX ALA A 103 UNP P0ACT4 THR 103 ENGINEERED MUTATION SEQRES 1 A 207 SER ARG LEU ASN ARG GLU SER VAL ILE ASP ALA ALA LEU SEQRES 2 A 207 GLU LEU LEU ASN GLU THR GLY ILE ASP GLY LEU THR THR SEQRES 3 A 207 ARG LYS LEU ALA GLN LYS LEU GLY ILE GLU GLN PRO THR SEQRES 4 A 207 LEU TYR TRP HIS VAL LYS ASN LYS ARG ALA LEU LEU ASP SEQRES 5 A 207 ALA LEU ALA VAL GLU ILE LEU ALA ARG HIS HIS ASP TYR SEQRES 6 A 207 SER LEU PRO ALA ALA GLY GLU SER TRP GLN SER PHE LEU SEQRES 7 A 207 ARG ASN ASN ALA MET SER PHE ARG ARG ALA LEU LEU ARG SEQRES 8 A 207 TYR ARG ASP GLY ALA LYS VAL HIS LEU GLY ALA ARG PRO SEQRES 9 A 207 ASP GLU LYS GLN TYR ASP THR VAL GLU THR GLN LEU ARG SEQRES 10 A 207 PHE MET THR GLU ASN GLY PHE SER LEU ARG ASP GLY LEU SEQRES 11 A 207 TYR ALA ILE SER ALA VAL SER HIS PHE THR LEU GLY ALA SEQRES 12 A 207 VAL LEU GLU GLN GLN GLU HIS THR ALA ALA LEU THR ASP SEQRES 13 A 207 ARG PRO ALA ALA PRO ASP GLU ASN LEU PRO PRO LEU LEU SEQRES 14 A 207 ARG GLU ALA LEU GLN ILE MET ASP SER ASP ASP GLY GLU SEQRES 15 A 207 GLN ALA PHE LEU HIS GLY LEU GLU SER LEU ILE ARG GLY SEQRES 16 A 207 PHE GLU VAL GLN LEU THR ALA LEU LEU GLN ILE VAL HET MIY A 301 66 HET MG A 302 1 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET CL A 306 1 HETNAM MIY (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A- HETNAM 2 MIY TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A- HETNAM 3 MIY OCTAHYDROTETRACENE-2- CARBOXAMIDE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN MIY MINOCYCLINE FORMUL 2 MIY C23 H27 N3 O7 FORMUL 3 MG MG 2+ FORMUL 4 CL 4(CL 1-) FORMUL 8 HOH *41(H2 O) HELIX 1 AA1 ASN A 5 LEU A 25 1 21 HELIX 2 AA2 THR A 26 LEU A 34 1 9 HELIX 3 AA3 GLU A 37 VAL A 45 1 9 HELIX 4 AA4 ASN A 47 HIS A 64 1 18 HELIX 5 AA5 SER A 74 ARG A 92 1 19 HELIX 6 AA6 ASP A 95 GLY A 102 1 8 HELIX 7 AA7 ASP A 106 LYS A 108 5 3 HELIX 8 AA8 GLN A 109 ASN A 123 1 15 HELIX 9 AA9 SER A 126 HIS A 151 1 26 HELIX 10 AB1 PRO A 167 ASP A 180 1 14 HELIX 11 AB2 GLY A 182 LEU A 204 1 23 LINK O6 AMIY A 301 MG MG A 302 1555 1555 1.93 LINK O6 BMIY A 301 MG MG A 302 1555 1555 1.87 LINK O5 AMIY A 301 MG MG A 302 1555 1555 1.91 LINK O5 BMIY A 301 MG MG A 302 1555 1555 2.07 LINK MG MG A 302 O HOH A 401 1555 1555 2.31 LINK MG MG A 302 O HOH A 405 1555 1555 2.14 LINK MG MG A 302 O HOH A 417 1555 1555 2.15 SITE 1 AC1 20 HIS A 64 SER A 67 ASN A 82 PHE A 86 SITE 2 AC1 20 HIS A 100 PRO A 105 THR A 112 GLN A 116 SITE 3 AC1 20 LEU A 131 SER A 135 SER A 138 HIS A 139 SITE 4 AC1 20 GLU A 147 HIS A 151 LEU A 174 MET A 177 SITE 5 AC1 20 MG A 302 HOH A 401 HOH A 405 HOH A 417 SITE 1 AC2 5 HIS A 100 MIY A 301 HOH A 401 HOH A 405 SITE 2 AC2 5 HOH A 417 SITE 1 AC3 3 LEU A 4 GLN A 76 ARG A 80 SITE 1 AC4 3 THR A 26 THR A 27 HOH A 424 SITE 1 AC5 3 ASN A 5 ARG A 6 GLU A 7 SITE 1 AC6 2 SER A 74 SER A 77 CRYST1 67.810 67.810 180.160 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014747 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014747 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005551 0.00000