HEADER ELECTRON TRANSPORT 29-JAN-19 6QKN TITLE STRUCTURE OF THE AZIDE-INHIBITED FORM OF CYTOCHROME C PEROXIDASE FROM TITLE 2 OBLIGATE HUMAN PATHOGENIC BACTERIUM NEISSERIA GONORRHOEAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME-C PEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN CCPR; COMPND 5 EC: 1.11.1.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 GENE: CCPA, E8M64_00570, ERS135259_00627, NCTC13484_01765; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NEISSERIA GONORRHOEAE, BACTERIAL PEROXIDASE, ROS DETOXIFICATION, KEYWDS 2 ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.L.CARVALHO,M.J.ROMAO,S.PAULETA,C.NOBREGA REVDAT 3 24-JAN-24 6QKN 1 REMARK REVDAT 2 20-JUL-22 6QKN 1 COMPND REMARK HELIX LINK REVDAT 2 2 1 SITE SCALE ATOM REVDAT 1 19-FEB-20 6QKN 0 JRNL AUTH A.L.CARVALHO,M.J.ROMAO,S.PAULETA,C.NOBREGA JRNL TITL STRUCTURE OF THE MIXED-VALENCE, ACTIVE FORM, OF CYTOCHROME C JRNL TITL 2 PEROXIDASE FROM OBLIGATE HUMAN PATHOGENIC BACTERIUM JRNL TITL 3 NEISSERIA GONORRHOEAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 28748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1466 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2070 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5059 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 180 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : -1.50000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.353 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.060 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5410 ; 0.010 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 4991 ; 0.001 ; 0.019 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7358 ; 1.907 ; 1.919 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11518 ; 1.106 ; 2.737 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 652 ; 6.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 273 ;35.888 ;23.773 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 880 ;13.779 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.076 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 752 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6224 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1232 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2620 ; 1.515 ; 2.011 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2611 ; 1.501 ; 2.009 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3257 ; 2.304 ; 3.006 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3258 ; 2.304 ; 3.007 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2790 ; 2.315 ; 2.262 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2786 ; 2.197 ; 2.260 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4099 ; 3.227 ; 3.311 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6288 ; 4.952 ;24.292 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6272 ; 4.934 ;24.244 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): -26.9830 -2.4780 13.1410 REMARK 3 T TENSOR REMARK 3 T11: 0.0551 T22: 0.1327 REMARK 3 T33: 0.1813 T12: -0.0292 REMARK 3 T13: -0.0429 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.0828 L22: 2.4737 REMARK 3 L33: 1.3062 L12: -1.0535 REMARK 3 L13: 0.5485 L23: -0.3758 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: 0.1092 S13: -0.0375 REMARK 3 S21: -0.1521 S22: 0.0034 S23: 0.4668 REMARK 3 S31: -0.0354 S32: -0.1723 S33: -0.0057 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 325 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3540 -4.1560 14.7150 REMARK 3 T TENSOR REMARK 3 T11: 0.0558 T22: 0.0485 REMARK 3 T33: 0.0478 T12: -0.0212 REMARK 3 T13: 0.0188 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 1.7628 L22: 3.1114 REMARK 3 L33: 0.8259 L12: -1.1173 REMARK 3 L13: -0.1030 L23: -0.0242 REMARK 3 S TENSOR REMARK 3 S11: 0.0883 S12: 0.1119 S13: -0.0073 REMARK 3 S21: -0.1836 S22: -0.0613 S23: -0.1866 REMARK 3 S31: -0.0139 S32: 0.0609 S33: -0.0270 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 6QKN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100351. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30270 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 65.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.72300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FU3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % 5/4 PO/OH AND 0.1 M MES PH 6.0 IN REMARK 280 THE PRESENCE OF 2 MM CACL2, 10 MM SODIUM ASCORBATE AND 0.2 MM REMARK 280 FMN, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.56000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.41500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.57000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.41500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.56000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.57000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 326 REMARK 465 LYS B 327 REMARK 465 PRO B 328 REMARK 465 ASP B 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 59 61.87 -114.58 REMARK 500 PHE A 97 161.08 77.36 REMARK 500 GLU A 118 -105.49 -115.03 REMARK 500 ASP A 148 80.14 -158.49 REMARK 500 ASP A 234 123.04 -37.57 REMARK 500 PHE A 265 172.50 74.50 REMARK 500 ALA A 322 62.19 -116.85 REMARK 500 HIS B 59 61.35 -115.22 REMARK 500 PHE B 97 160.95 76.36 REMARK 500 GLU B 118 -106.14 -115.72 REMARK 500 ASP B 148 81.98 -160.36 REMARK 500 ASP B 234 122.61 -37.30 REMARK 500 PHE B 265 173.02 75.65 REMARK 500 PRO B 323 157.17 -49.41 REMARK 500 MET B 324 -157.02 -153.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 59 NE2 REMARK 620 2 HEC A 401 NA 91.4 REMARK 620 3 HEC A 401 NB 93.0 90.3 REMARK 620 4 HEC A 401 NC 89.9 178.7 89.2 REMARK 620 5 HEC A 401 ND 90.0 92.0 176.2 88.5 REMARK 620 6 AZI A 404 N3 167.5 100.6 90.5 78.2 86.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 83 OD1 REMARK 620 2 THR A 261 O 145.0 REMARK 620 3 PRO A 263 O 95.1 84.9 REMARK 620 4 HOH A 519 O 73.1 141.3 84.3 REMARK 620 5 HOH A 536 O 136.8 72.2 114.1 78.7 REMARK 620 6 HOH A 547 O 74.0 71.3 81.3 142.6 138.6 REMARK 620 7 HOH A 553 O 82.6 89.2 166.2 107.8 75.6 85.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 204 NE2 REMARK 620 2 HEC A 402 NA 94.7 REMARK 620 3 HEC A 402 NB 89.2 89.4 REMARK 620 4 HEC A 402 NC 90.1 175.3 90.1 REMARK 620 5 HEC A 402 ND 95.8 90.5 175.0 89.6 REMARK 620 6 MET A 280 SD 176.6 84.8 87.4 90.5 87.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 59 NE2 REMARK 620 2 HEC B 401 NA 87.1 REMARK 620 3 HEC B 401 NB 90.5 90.0 REMARK 620 4 HEC B 401 NC 93.4 179.3 89.5 REMARK 620 5 HEC B 401 ND 92.0 90.2 177.5 90.3 REMARK 620 6 AZI B 404 N1 176.3 90.5 92.4 89.0 85.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 83 OD1 REMARK 620 2 THR B 261 O 148.8 REMARK 620 3 PRO B 263 O 96.2 85.3 REMARK 620 4 HOH B 530 O 71.3 139.6 85.5 REMARK 620 5 HOH B 538 O 136.5 69.7 110.3 76.9 REMARK 620 6 HOH B 558 O 80.8 90.6 166.7 105.5 79.9 REMARK 620 7 HOH B 566 O 73.6 75.8 81.6 141.0 142.1 85.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 204 NE2 REMARK 620 2 HEC B 402 NA 92.8 REMARK 620 3 HEC B 402 NB 89.2 89.8 REMARK 620 4 HEC B 402 NC 91.9 175.2 90.3 REMARK 620 5 HEC B 402 ND 96.2 90.5 174.6 88.9 REMARK 620 6 MET B 280 SD 175.2 88.0 86.1 87.2 88.5 REMARK 620 N 1 2 3 4 5 DBREF1 6QKN A 3 329 UNP A0A1D3HIT0_NEIGO DBREF2 6QKN A A0A1D3HIT0 59 385 DBREF1 6QKN B 3 329 UNP A0A1D3HIT0_NEIGO DBREF2 6QKN B A0A1D3HIT0 59 385 SEQADV 6QKN MET A 1 UNP A0A1D3HIT INITIATING METHIONINE SEQADV 6QKN GLY A 2 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6QKN MET B 1 UNP A0A1D3HIT INITIATING METHIONINE SEQADV 6QKN GLY B 2 UNP A0A1D3HIT EXPRESSION TAG SEQRES 1 A 329 MET GLY GLU ASP GLN ASP LEU LEU LYS ARG ALA GLN GLY SEQRES 2 A 329 VAL PHE GLN PRO LEU PRO THR VAL GLU GLU MET GLN LYS SEQRES 3 A 329 ILE ARG PRO PHE THR GLU GLU GLN VAL LYS LEU GLY HIS SEQRES 4 A 329 GLN LEU TRP TYR GLU PRO ARG LEU SER LYS GLY ASN THR SEQRES 5 A 329 VAL SER CYS ASN SER CYS HIS ASN LEU ALA SER ALA GLY SEQRES 6 A 329 VAL ASP ASN MET PRO THR SER GLN GLY HIS LYS GLY GLN SEQRES 7 A 329 PHE GLY GLY ARG ASN SER PRO THR ALA LEU ASN ALA ALA SEQRES 8 A 329 LEU LEU GLY SER GLN PHE TRP ASP GLY ARG ALA ALA ASP SEQRES 9 A 329 VAL GLU GLU GLN ALA GLY GLY PRO LEU VAL ASN PRO VAL SEQRES 10 A 329 GLU MET ALA ASN ASP SER GLN GLU ALA ALA ALA ALA LYS SEQRES 11 A 329 ILE ALA LYS VAL PRO GLU TYR GLN GLU MET PHE LYS LYS SEQRES 12 A 329 ALA PHE PRO GLU ASP GLY ALA VAL SER PHE LYS ASN ILE SEQRES 13 A 329 THR THR ALA LEU GLY ALA PHE GLU ARG THR LEU LEU THR SEQRES 14 A 329 PRO THR LYS TRP ASP GLU TYR LEU LYS GLY ASN VAL ASN SEQRES 15 A 329 ALA LEU SER GLU GLN GLU ARG LYS GLY VAL ARG ALA PHE SEQRES 16 A 329 MET ASP ASN GLY CYS ILE ALA CYS HIS ASN GLY VAL ASN SEQRES 17 A 329 LEU GLY GLY THR THR PHE GLN LYS PHE GLY LEU VAL GLN SEQRES 18 A 329 GLY PRO TYR TRP LYS PHE ILE GLU ASP PRO LYS ARG ASP SEQRES 19 A 329 LYS GLY ARG ALA ASP VAL THR LYS LYS THR GLU ASP GLU SEQRES 20 A 329 PHE PHE PHE ARG VAL PRO GLY LEU ARG ASN VAL ALA LYS SEQRES 21 A 329 THR TYR PRO TYR PHE HIS ASN GLY SER VAL TRP GLU LEU SEQRES 22 A 329 ASP LYS ALA VAL THR ILE MET GLY LYS ALA GLN LEU GLY SEQRES 23 A 329 LYS ASP ILE PRO LYS GLU ASP VAL ASP ASN ILE VAL VAL SEQRES 24 A 329 PHE LEU ASN ALA LEU SER GLY ASN VAL SER GLU SER ALA SEQRES 25 A 329 ARG THR MET PRO GLU LEU PRO LEU THR ALA PRO MET GLU SEQRES 26 A 329 SER LYS PRO ASP SEQRES 1 B 329 MET GLY GLU ASP GLN ASP LEU LEU LYS ARG ALA GLN GLY SEQRES 2 B 329 VAL PHE GLN PRO LEU PRO THR VAL GLU GLU MET GLN LYS SEQRES 3 B 329 ILE ARG PRO PHE THR GLU GLU GLN VAL LYS LEU GLY HIS SEQRES 4 B 329 GLN LEU TRP TYR GLU PRO ARG LEU SER LYS GLY ASN THR SEQRES 5 B 329 VAL SER CYS ASN SER CYS HIS ASN LEU ALA SER ALA GLY SEQRES 6 B 329 VAL ASP ASN MET PRO THR SER GLN GLY HIS LYS GLY GLN SEQRES 7 B 329 PHE GLY GLY ARG ASN SER PRO THR ALA LEU ASN ALA ALA SEQRES 8 B 329 LEU LEU GLY SER GLN PHE TRP ASP GLY ARG ALA ALA ASP SEQRES 9 B 329 VAL GLU GLU GLN ALA GLY GLY PRO LEU VAL ASN PRO VAL SEQRES 10 B 329 GLU MET ALA ASN ASP SER GLN GLU ALA ALA ALA ALA LYS SEQRES 11 B 329 ILE ALA LYS VAL PRO GLU TYR GLN GLU MET PHE LYS LYS SEQRES 12 B 329 ALA PHE PRO GLU ASP GLY ALA VAL SER PHE LYS ASN ILE SEQRES 13 B 329 THR THR ALA LEU GLY ALA PHE GLU ARG THR LEU LEU THR SEQRES 14 B 329 PRO THR LYS TRP ASP GLU TYR LEU LYS GLY ASN VAL ASN SEQRES 15 B 329 ALA LEU SER GLU GLN GLU ARG LYS GLY VAL ARG ALA PHE SEQRES 16 B 329 MET ASP ASN GLY CYS ILE ALA CYS HIS ASN GLY VAL ASN SEQRES 17 B 329 LEU GLY GLY THR THR PHE GLN LYS PHE GLY LEU VAL GLN SEQRES 18 B 329 GLY PRO TYR TRP LYS PHE ILE GLU ASP PRO LYS ARG ASP SEQRES 19 B 329 LYS GLY ARG ALA ASP VAL THR LYS LYS THR GLU ASP GLU SEQRES 20 B 329 PHE PHE PHE ARG VAL PRO GLY LEU ARG ASN VAL ALA LYS SEQRES 21 B 329 THR TYR PRO TYR PHE HIS ASN GLY SER VAL TRP GLU LEU SEQRES 22 B 329 ASP LYS ALA VAL THR ILE MET GLY LYS ALA GLN LEU GLY SEQRES 23 B 329 LYS ASP ILE PRO LYS GLU ASP VAL ASP ASN ILE VAL VAL SEQRES 24 B 329 PHE LEU ASN ALA LEU SER GLY ASN VAL SER GLU SER ALA SEQRES 25 B 329 ARG THR MET PRO GLU LEU PRO LEU THR ALA PRO MET GLU SEQRES 26 B 329 SER LYS PRO ASP HET HEC A 401 43 HET HEC A 402 43 HET CA A 403 1 HET AZI A 404 3 HET HEC B 401 43 HET HEC B 402 43 HET CA B 403 1 HET AZI B 404 3 HETNAM HEC HEME C HETNAM CA CALCIUM ION HETNAM AZI AZIDE ION FORMUL 3 HEC 4(C34 H34 FE N4 O4) FORMUL 5 CA 2(CA 2+) FORMUL 6 AZI 2(N3 1-) FORMUL 11 HOH *187(H2 O) HELIX 1 AA1 GLY A 2 PHE A 15 1 14 HELIX 2 AA2 THR A 20 ARG A 28 1 9 HELIX 3 AA3 THR A 31 TYR A 43 1 13 HELIX 4 AA4 GLU A 44 SER A 48 5 5 HELIX 5 AA5 SER A 54 HIS A 59 1 6 HELIX 6 AA6 ASN A 60 ALA A 64 5 5 HELIX 7 AA7 GLY A 74 GLN A 78 5 5 HELIX 8 AA8 ASN A 89 LEU A 93 5 5 HELIX 9 AA9 ASP A 104 ALA A 109 1 6 HELIX 10 AB1 ALA A 109 ASN A 115 1 7 HELIX 11 AB2 SER A 123 ALA A 129 1 7 HELIX 12 AB3 LYS A 130 LYS A 133 5 4 HELIX 13 AB4 VAL A 134 PHE A 145 1 12 HELIX 14 AB5 SER A 152 ARG A 165 1 14 HELIX 15 AB6 THR A 171 LYS A 178 1 8 HELIX 16 AB7 ASN A 180 LEU A 184 5 5 HELIX 17 AB8 SER A 185 ASN A 198 1 14 HELIX 18 AB9 GLY A 199 CYS A 203 5 5 HELIX 19 AC1 PRO A 223 PHE A 227 5 5 HELIX 20 AC2 ARG A 237 LYS A 242 1 6 HELIX 21 AC3 LYS A 243 GLU A 247 5 5 HELIX 22 AC4 ASN A 257 THR A 261 5 5 HELIX 23 AC5 GLU A 272 GLY A 286 1 15 HELIX 24 AC6 PRO A 290 ALA A 303 1 14 HELIX 25 AC7 ALA A 322 SER A 326 5 5 HELIX 26 AC8 ASP B 4 PHE B 15 1 12 HELIX 27 AC9 GLU B 22 ILE B 27 5 6 HELIX 28 AD1 THR B 31 TYR B 43 1 13 HELIX 29 AD2 GLU B 44 SER B 48 5 5 HELIX 30 AD3 SER B 54 HIS B 59 1 6 HELIX 31 AD4 ASN B 60 ALA B 64 5 5 HELIX 32 AD5 GLY B 74 GLN B 78 5 5 HELIX 33 AD6 ASN B 89 LEU B 93 5 5 HELIX 34 AD7 ASP B 104 ALA B 109 1 6 HELIX 35 AD8 ALA B 109 ASN B 115 1 7 HELIX 36 AD9 SER B 123 LYS B 130 1 8 HELIX 37 AE1 ILE B 131 LYS B 133 5 3 HELIX 38 AE2 VAL B 134 PHE B 145 1 12 HELIX 39 AE3 SER B 152 ARG B 165 1 14 HELIX 40 AE4 THR B 171 LYS B 178 1 8 HELIX 41 AE5 ASN B 180 LEU B 184 5 5 HELIX 42 AE6 SER B 185 ASN B 198 1 14 HELIX 43 AE7 GLY B 199 CYS B 203 5 5 HELIX 44 AE8 PRO B 223 PHE B 227 5 5 HELIX 45 AE9 ARG B 237 LYS B 242 1 6 HELIX 46 AF1 LYS B 243 GLU B 247 5 5 HELIX 47 AF2 ASN B 257 THR B 261 5 5 HELIX 48 AF3 GLU B 272 GLY B 286 1 15 HELIX 49 AF4 PRO B 290 ALA B 303 1 14 SHEET 1 AA1 2 PHE A 214 LYS A 216 0 SHEET 2 AA1 2 PHE A 249 ARG A 251 -1 O PHE A 250 N GLN A 215 SHEET 1 AA2 2 PHE B 214 LYS B 216 0 SHEET 2 AA2 2 PHE B 249 ARG B 251 -1 O PHE B 250 N GLN B 215 LINK SG CYS A 55 CAB HEC A 401 1555 1555 1.76 LINK SG CYS A 58 CAC HEC A 401 1555 1555 1.84 LINK SG CYS A 200 CAB HEC A 402 1555 1555 1.74 LINK SG CYS A 203 CAC HEC A 402 1555 1555 1.77 LINK SG CYS B 55 CAB HEC B 401 1555 1555 1.73 LINK SG CYS B 58 CAC HEC B 401 1555 1555 1.81 LINK SG CYS B 200 CAB HEC B 402 1555 1555 1.73 LINK SG CYS B 203 CAC HEC B 402 1555 1555 1.80 LINK NE2 HIS A 59 FE HEC A 401 1555 1555 2.04 LINK OD1 ASN A 83 CA CA A 403 1555 1555 2.32 LINK NE2 HIS A 204 FE HEC A 402 1555 1555 2.07 LINK O THR A 261 CA CA A 403 1555 1555 2.32 LINK O PRO A 263 CA CA A 403 1555 1555 2.36 LINK SD MET A 280 FE HEC A 402 1555 1555 2.38 LINK FE HEC A 401 N3 AZI A 404 1555 1555 2.30 LINK CA CA A 403 O HOH A 519 1555 1555 2.44 LINK CA CA A 403 O HOH A 536 1555 1555 2.42 LINK CA CA A 403 O HOH A 547 1555 1555 2.45 LINK CA CA A 403 O HOH A 553 1555 1555 2.42 LINK NE2 HIS B 59 FE HEC B 401 1555 1555 2.03 LINK OD1 ASN B 83 CA CA B 403 1555 1555 2.32 LINK NE2 HIS B 204 FE HEC B 402 1555 1555 2.07 LINK O THR B 261 CA CA B 403 1555 1555 2.30 LINK O PRO B 263 CA CA B 403 1555 1555 2.36 LINK SD MET B 280 FE HEC B 402 1555 1555 2.37 LINK FE HEC B 401 N1 AZI B 404 1555 1555 2.51 LINK CA CA B 403 O HOH B 530 1555 1555 2.43 LINK CA CA B 403 O HOH B 538 1555 1555 2.42 LINK CA CA B 403 O HOH B 558 1555 1555 2.42 LINK CA CA B 403 O HOH B 566 1555 1555 2.43 CISPEP 1 GLY A 222 PRO A 223 0 1.19 CISPEP 2 TYR A 262 PRO A 263 0 -9.21 CISPEP 3 GLY B 222 PRO B 223 0 0.23 CISPEP 4 TYR B 262 PRO B 263 0 -9.34 CRYST1 79.120 89.140 94.830 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012639 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010545 0.00000