HEADER DNA BINDING PROTEIN 30-JAN-19 6QKQ TITLE NMR SOLUTION STRUCTURE OF LSR2-T112D BINDING DOMAIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOID-ASSOCIATED PROTEIN LSR2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 GENE: LSR2, RV3597C, MTCY07H7B.25; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TUBERCULOSIS, DNA ORAGANISATION, TRANSCRIPTIONAL REGULATOR, PKNB KEYWDS 2 SUBSTRATE, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.BARTHE,M.COHEN-GONSAUD,G.V.MUKAMOLOVA REVDAT 4 14-JUN-23 6QKQ 1 REMARK REVDAT 3 18-DEC-19 6QKQ 1 JRNL REVDAT 2 09-OCT-19 6QKQ 1 JRNL REVDAT 1 17-JUL-19 6QKQ 0 JRNL AUTH K.ALQASEER,O.TURAPOV,P.BARTHE,H.JAGATIA,A.DE VISCH, JRNL AUTH 2 C.ROUMESTAND,M.WEGRZYN,I.L.BARTEK,M.I.VOSKUIL,H.M.O'HARE, JRNL AUTH 3 P.AJUH,A.R.BOTTRILL,A.A.WITNEY,M.COHEN-GONSAUD,S.J.WADDELL, JRNL AUTH 4 G.V.MUKAMOLOVA JRNL TITL PROTEIN KINASE B CONTROLS MYCOBACTERIUM TUBERCULOSIS GROWTH JRNL TITL 2 VIA PHOSPHORYLATION OF THE TRANSCRIPTIONAL REGULATOR LSR2 AT JRNL TITL 3 THREONINE 112. JRNL REF MOL.MICROBIOL. V. 112 1847 2019 JRNL REFN ESSN 1365-2958 JRNL PMID 31562654 JRNL DOI 10.1111/MMI.14398 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RECOORD PROCEDURE REMARK 4 REMARK 4 6QKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100336. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-15N] LSR2-T112D REMARK 210 PROTEIN, 90% H2O/10% D2O; 0.5 MM REMARK 210 [U-15N] LSR2-T112D PROTEIN, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 2D 1H-1H NOESY; 2D 1H-1H REMARK 210 TOCSY; 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CINDY, GIFA REMARK 210 METHOD USED : MDSA AND REFINEMENT IN EXPLICIT REMARK 210 SOLVENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 62 REMARK 465 PRO A 63 REMARK 465 HIS A 64 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 66 -46.92 72.83 REMARK 500 1 ARG A 70 70.82 63.56 REMARK 500 1 ARG A 72 -178.59 66.35 REMARK 500 1 SER A 95 -39.22 79.68 REMARK 500 1 ARG A 99 -173.40 63.23 REMARK 500 2 SER A 66 -70.79 59.63 REMARK 500 2 SER A 80 -43.90 -137.90 REMARK 500 2 ASN A 93 177.35 70.24 REMARK 500 2 VAL A 94 -87.99 -111.54 REMARK 500 2 SER A 95 107.48 -175.85 REMARK 500 2 THR A 96 82.02 -64.74 REMARK 500 2 ARG A 97 -36.01 -170.45 REMARK 500 3 SER A 68 -62.97 70.54 REMARK 500 3 ASP A 76 101.49 -165.61 REMARK 500 3 ARG A 77 -65.99 -169.99 REMARK 500 3 SER A 80 -46.63 -160.13 REMARK 500 3 ASN A 93 88.92 61.53 REMARK 500 3 SER A 95 32.07 -149.38 REMARK 500 3 ARG A 97 74.37 56.52 REMARK 500 4 GLU A 78 -38.72 73.68 REMARK 500 6 GLU A 78 99.43 61.68 REMARK 500 6 GLN A 79 74.69 -114.10 REMARK 500 6 SER A 95 72.38 61.82 REMARK 500 6 THR A 96 97.96 -57.35 REMARK 500 6 ARG A 97 -79.77 -148.05 REMARK 500 7 ARG A 70 93.61 56.67 REMARK 500 7 ASP A 76 -166.84 -112.41 REMARK 500 8 ARG A 77 -57.92 179.79 REMARK 500 8 GLN A 79 77.82 -112.15 REMARK 500 8 SER A 95 -72.31 -60.86 REMARK 500 9 ARG A 72 -86.56 63.66 REMARK 500 9 ARG A 99 127.15 173.48 REMARK 500 10 SER A 66 96.90 70.54 REMARK 500 11 ARG A 77 -54.15 74.08 REMARK 500 11 GLN A 79 77.16 -108.18 REMARK 500 11 ARG A 97 81.14 63.13 REMARK 500 11 ARG A 99 -84.65 -103.45 REMARK 500 12 SER A 68 -67.27 -104.23 REMARK 500 12 SER A 80 -56.41 -141.55 REMARK 500 13 SER A 66 99.69 -60.44 REMARK 500 13 ARG A 77 -60.84 -138.10 REMARK 500 13 SER A 95 95.96 66.50 REMARK 500 13 ARG A 99 -159.99 -112.59 REMARK 500 14 GLN A 79 85.22 -68.74 REMARK 500 14 VAL A 94 -70.60 -76.21 REMARK 500 14 SER A 95 -87.77 53.93 REMARK 500 16 ARG A 72 -46.42 70.61 REMARK 500 16 ARG A 77 -83.05 63.98 REMARK 500 16 GLU A 78 -67.34 -169.72 REMARK 500 16 GLN A 79 65.29 -109.63 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ARG A 84 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6QKP RELATED DB: PDB REMARK 900 6QKP CONTAINS THE WILD-TYPE PROTEIN OF THIS MUTANT. REMARK 900 RELATED ID: 34359 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF LSR2-T112D BINDING DOMAIN. DBREF 6QKQ A 74 111 UNP P9WIP7 LSR2_MYCTU 74 111 SEQADV 6QKQ GLY A 62 UNP P9WIP7 EXPRESSION TAG SEQADV 6QKQ PRO A 63 UNP P9WIP7 EXPRESSION TAG SEQADV 6QKQ HIS A 64 UNP P9WIP7 EXPRESSION TAG SEQADV 6QKQ MET A 65 UNP P9WIP7 EXPRESSION TAG SEQADV 6QKQ SER A 66 UNP P9WIP7 EXPRESSION TAG SEQADV 6QKQ GLY A 67 UNP P9WIP7 EXPRESSION TAG SEQADV 6QKQ SER A 68 UNP P9WIP7 EXPRESSION TAG SEQADV 6QKQ GLY A 69 UNP P9WIP7 EXPRESSION TAG SEQADV 6QKQ ARG A 70 UNP P9WIP7 EXPRESSION TAG SEQADV 6QKQ GLY A 71 UNP P9WIP7 EXPRESSION TAG SEQADV 6QKQ ARG A 72 UNP P9WIP7 EXPRESSION TAG SEQADV 6QKQ GLY A 73 UNP P9WIP7 EXPRESSION TAG SEQADV 6QKQ ASP A 112 UNP P9WIP7 EXPRESSION TAG SEQRES 1 A 51 GLY PRO HIS MET SER GLY SER GLY ARG GLY ARG GLY ALA SEQRES 2 A 51 ILE ASP ARG GLU GLN SER ALA ALA ILE ARG GLU TRP ALA SEQRES 3 A 51 ARG ARG ASN GLY HIS ASN VAL SER THR ARG GLY ARG ILE SEQRES 4 A 51 PRO ALA ASP VAL ILE ASP ALA TYR HIS ALA ALA ASP HELIX 1 AA1 GLN A 79 GLY A 91 1 13 HELIX 2 AA2 PRO A 101 ALA A 111 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1