HEADER HYDROLASE 31-JAN-19 6QLA TITLE CRYSTAL STRUCTURE OF THE PMGL2 ESTERASE (POINT MUTANT 1) FROM TITLE 2 PERMAFROST METAGENOMIC LIBRARY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PMGL2; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PERMAFROST METAGENOME; SOURCE 3 ORGANISM_TAXID: 1082480; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ESTERASE, PERMAFROST, METAGENOME, HSL FAMILY, GCSAG MOTIF, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.BOYKO,D.GARSIA,A.Y.NIKOLAEVA,D.A.KORZHENEVSKIY,M.V.KRYUKOVA, AUTHOR 2 L.E.PETROVSKAYA,K.A.NOVOTOTSKAYA-VLASOVA,E.M.RIVKINA,D.A.DOLGIKH, AUTHOR 3 M.P.KIRPICHNIKOV,V.O.POPOV REVDAT 4 24-JAN-24 6QLA 1 REMARK REVDAT 3 11-AUG-21 6QLA 1 SOURCE REMARK LINK REVDAT 2 19-FEB-20 6QLA 1 JRNL REVDAT 1 25-DEC-19 6QLA 0 JRNL AUTH K.M.BOYKO,M.V.KRYUKOVA,L.E.PETROVSKAYA,A.Y.NIKOLAEVA, JRNL AUTH 2 D.A.KORZHENEVSKY,K.A.NOVOTOTSKAYA-VLASOVA,E.M.RIVKINA, JRNL AUTH 3 D.A.DOLGIKH,M.P.KIRPICHNIKOV,V.O.POPOV JRNL TITL CRYSTAL STRUCTURE OF PMGL2 ESTERASE FROM THE JRNL TITL 2 HORMONE-SENSITIVE LIPASE FAMILY WITH GCSAG MOTIF AROUND THE JRNL TITL 3 CATALYTIC SERINE. JRNL REF PLOS ONE V. 15 26838 2020 JRNL REFN ESSN 1932-6203 JRNL PMID 31990908 JRNL DOI 10.1371/JOURNAL.PONE.0226838 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 104774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5606 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7502 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 393 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4805 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 577 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.49000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.201 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5060 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4726 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6880 ; 1.921 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10877 ; 1.691 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 641 ; 6.234 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 285 ;24.759 ;19.123 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 727 ;13.397 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 61 ;20.935 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 634 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5775 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1176 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 14 332 B 14 332 10244 0.090 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6QLA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110412 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 56.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.95900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6QIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250MM MAGNESIUM CHLORIDE, 12-18% REMARK 280 PEG3350, 100MM HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.09000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 ALA A 9 REMARK 465 GLN A 10 REMARK 465 THR A 11 REMARK 465 PRO A 12 REMARK 465 GLY A 13 REMARK 465 SER A 333 REMARK 465 SER A 334 REMARK 465 SER A 335 REMARK 465 ILE A 336 REMARK 465 PRO A 337 REMARK 465 THR A 338 REMARK 465 PRO A 339 REMARK 465 ARG A 340 REMARK 465 SER A 341 REMARK 465 PRO A 342 REMARK 465 SER A 343 REMARK 465 LEU A 344 REMARK 465 GLU A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 465 HIS A 350 REMARK 465 HIS A 351 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 GLY B 4 REMARK 465 SER B 5 REMARK 465 ALA B 6 REMARK 465 SER B 7 REMARK 465 SER B 8 REMARK 465 ALA B 9 REMARK 465 GLN B 10 REMARK 465 THR B 11 REMARK 465 PRO B 12 REMARK 465 GLY B 13 REMARK 465 SER B 333 REMARK 465 SER B 334 REMARK 465 SER B 335 REMARK 465 ILE B 336 REMARK 465 PRO B 337 REMARK 465 THR B 338 REMARK 465 PRO B 339 REMARK 465 ARG B 340 REMARK 465 SER B 341 REMARK 465 PRO B 342 REMARK 465 SER B 343 REMARK 465 LEU B 344 REMARK 465 GLU B 345 REMARK 465 HIS B 346 REMARK 465 HIS B 347 REMARK 465 HIS B 348 REMARK 465 HIS B 349 REMARK 465 HIS B 350 REMARK 465 HIS B 351 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 14 CG CD1 CD2 REMARK 470 SER A 16 OG REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 ASN A 44 CG OD1 ND2 REMARK 470 LYS A 226 CD CE NZ REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 ARG B 97 CZ NH1 NH2 REMARK 470 VAL B 225 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 66 OE1 GLU B 73 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 34 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 283 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 284 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG B 66 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 66 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 146 32.63 -97.40 REMARK 500 SER A 174 -122.69 63.44 REMARK 500 PRO A 235 48.30 -92.92 REMARK 500 PRO B 146 30.21 -98.51 REMARK 500 SER B 174 -121.15 63.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 801 DISTANCE = 5.92 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG6 A 402 REMARK 610 PG6 A 403 REMARK 610 PG6 B 401 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 529 O REMARK 620 2 HOH A 532 O 89.5 REMARK 620 3 HOH A 705 O 86.9 88.5 REMARK 620 4 HOH B 613 O 80.1 169.4 88.8 REMARK 620 5 HOH B 743 O 170.2 99.8 90.3 90.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 558 O REMARK 620 2 HOH B 531 O 86.1 REMARK 620 3 HOH B 580 O 173.8 94.3 REMARK 620 4 HOH B 718 O 83.8 163.3 94.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 539 O REMARK 620 2 HOH B 547 O 80.1 REMARK 620 3 HOH B 664 O 75.7 155.3 REMARK 620 4 HOH B 689 O 85.6 91.5 91.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG6 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG6 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG6 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6QIN RELATED DB: PDB REMARK 900 WILD TYPE PROTEIN DBREF1 6QLA A 1 343 UNP A0A142J6I6_9BACT DBREF2 6QLA A A0A142J6I6 1 343 DBREF1 6QLA B 1 343 UNP A0A142J6I6_9BACT DBREF2 6QLA B A0A142J6I6 1 343 SEQADV 6QLA THR A 173 UNP A0A142J6I CYS 173 CONFLICT SEQADV 6QLA SER A 202 UNP A0A142J6I CYS 202 CONFLICT SEQADV 6QLA LEU A 344 UNP A0A142J6I EXPRESSION TAG SEQADV 6QLA GLU A 345 UNP A0A142J6I EXPRESSION TAG SEQADV 6QLA HIS A 346 UNP A0A142J6I EXPRESSION TAG SEQADV 6QLA HIS A 347 UNP A0A142J6I EXPRESSION TAG SEQADV 6QLA HIS A 348 UNP A0A142J6I EXPRESSION TAG SEQADV 6QLA HIS A 349 UNP A0A142J6I EXPRESSION TAG SEQADV 6QLA HIS A 350 UNP A0A142J6I EXPRESSION TAG SEQADV 6QLA HIS A 351 UNP A0A142J6I EXPRESSION TAG SEQADV 6QLA THR B 173 UNP A0A142J6I CYS 173 CONFLICT SEQADV 6QLA SER B 202 UNP A0A142J6I CYS 202 CONFLICT SEQADV 6QLA LEU B 344 UNP A0A142J6I EXPRESSION TAG SEQADV 6QLA GLU B 345 UNP A0A142J6I EXPRESSION TAG SEQADV 6QLA HIS B 346 UNP A0A142J6I EXPRESSION TAG SEQADV 6QLA HIS B 347 UNP A0A142J6I EXPRESSION TAG SEQADV 6QLA HIS B 348 UNP A0A142J6I EXPRESSION TAG SEQADV 6QLA HIS B 349 UNP A0A142J6I EXPRESSION TAG SEQADV 6QLA HIS B 350 UNP A0A142J6I EXPRESSION TAG SEQADV 6QLA HIS B 351 UNP A0A142J6I EXPRESSION TAG SEQRES 1 A 351 MET ALA SER GLY SER ALA SER SER ALA GLN THR PRO GLY SEQRES 2 A 351 LEU MET SER TRP LEU PRO PRO SER ASN GLN LEU SER PRO SEQRES 3 A 351 GLU ALA ARG SER VAL LEU ASP ARG MET ASP ALA ALA LYS SEQRES 4 A 351 ALA PRO GLU PHE ASN GLY ASP LEU VAL ARG GLN ARG ALA SEQRES 5 A 351 PHE TYR GLN GLN PHE ASN ASP ASP ARG LEU VAL GLU MET SEQRES 6 A 351 ARG ARG VAL PHE ARG THR ARG GLU ARG HIS GLU THR LEU SEQRES 7 A 351 ASN ALA VAL HIS VAL GLN VAL VAL GLU PRO ALA ASP GLY SEQRES 8 A 351 VAL SER ALA ARG ASN ARG ASP ARG VAL LEU ILE ASN VAL SEQRES 9 A 351 HIS GLY GLY ALA PHE MET TRP GLY ALA GLY SER GLY ALA SEQRES 10 A 351 LEU VAL GLU ALA ILE PRO ILE ALA ALA THR MET GLY VAL SEQRES 11 A 351 SER VAL VAL THR VAL ASP TYR ARG LEU ALA PRO GLU ASN SEQRES 12 A 351 ARG TYR PRO ALA ALA SER GLU ASP VAL THR ALA VAL TYR SEQRES 13 A 351 ARG ALA LEU LEU GLU ARG TYR PRO ALA ALA ASN ILE GLY SEQRES 14 A 351 ILE PHE GLY THR SER ALA GLY GLY VAL ILE THR ALA GLN SEQRES 15 A 351 ALA VAL THR TRP ILE ARG ARG GLU GLY LEU PRO ARG PRO SEQRES 16 A 351 GLY ALA ILE GLY THR LEU SER GLY THR GLY ALA PRO TYR SEQRES 17 A 351 SER GLY ASP SER PRO TYR LEU ALA GLY VAL VAL PRO VAL SEQRES 18 A 351 GLY PRO GLY VAL LYS ALA PRO PRO LEU PRO GLY LEU LEU SEQRES 19 A 351 PRO THR ALA TYR MET GLU GLY VAL GLY ALA ASP ASP ALA SEQRES 20 A 351 ARG ALA TYR PRO LEU THR SER ASP ALA GLU THR VAL PHE SEQRES 21 A 351 MET PRO PRO THR LEU LEU LEU ALA GLY GLY ARG ASP PHE SEQRES 22 A 351 ALA VAL SER ALA LEU SER LEU ALA HIS ARG ARG LEU ALA SEQRES 23 A 351 ARG ALA GLY VAL ASP SER GLU LEU HIS LEU PHE ASP GLY SEQRES 24 A 351 LEU PRO HIS ALA PHE PHE VAL TRP PRO ASP MET PRO GLU SEQRES 25 A 351 SER LEU GLU ALA TYR ALA LEU ILE ALA GLY PHE PHE ASP SEQRES 26 A 351 SER ARG LEU GLY LEU THR PRO SER SER SER ILE PRO THR SEQRES 27 A 351 PRO ARG SER PRO SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 351 MET ALA SER GLY SER ALA SER SER ALA GLN THR PRO GLY SEQRES 2 B 351 LEU MET SER TRP LEU PRO PRO SER ASN GLN LEU SER PRO SEQRES 3 B 351 GLU ALA ARG SER VAL LEU ASP ARG MET ASP ALA ALA LYS SEQRES 4 B 351 ALA PRO GLU PHE ASN GLY ASP LEU VAL ARG GLN ARG ALA SEQRES 5 B 351 PHE TYR GLN GLN PHE ASN ASP ASP ARG LEU VAL GLU MET SEQRES 6 B 351 ARG ARG VAL PHE ARG THR ARG GLU ARG HIS GLU THR LEU SEQRES 7 B 351 ASN ALA VAL HIS VAL GLN VAL VAL GLU PRO ALA ASP GLY SEQRES 8 B 351 VAL SER ALA ARG ASN ARG ASP ARG VAL LEU ILE ASN VAL SEQRES 9 B 351 HIS GLY GLY ALA PHE MET TRP GLY ALA GLY SER GLY ALA SEQRES 10 B 351 LEU VAL GLU ALA ILE PRO ILE ALA ALA THR MET GLY VAL SEQRES 11 B 351 SER VAL VAL THR VAL ASP TYR ARG LEU ALA PRO GLU ASN SEQRES 12 B 351 ARG TYR PRO ALA ALA SER GLU ASP VAL THR ALA VAL TYR SEQRES 13 B 351 ARG ALA LEU LEU GLU ARG TYR PRO ALA ALA ASN ILE GLY SEQRES 14 B 351 ILE PHE GLY THR SER ALA GLY GLY VAL ILE THR ALA GLN SEQRES 15 B 351 ALA VAL THR TRP ILE ARG ARG GLU GLY LEU PRO ARG PRO SEQRES 16 B 351 GLY ALA ILE GLY THR LEU SER GLY THR GLY ALA PRO TYR SEQRES 17 B 351 SER GLY ASP SER PRO TYR LEU ALA GLY VAL VAL PRO VAL SEQRES 18 B 351 GLY PRO GLY VAL LYS ALA PRO PRO LEU PRO GLY LEU LEU SEQRES 19 B 351 PRO THR ALA TYR MET GLU GLY VAL GLY ALA ASP ASP ALA SEQRES 20 B 351 ARG ALA TYR PRO LEU THR SER ASP ALA GLU THR VAL PHE SEQRES 21 B 351 MET PRO PRO THR LEU LEU LEU ALA GLY GLY ARG ASP PHE SEQRES 22 B 351 ALA VAL SER ALA LEU SER LEU ALA HIS ARG ARG LEU ALA SEQRES 23 B 351 ARG ALA GLY VAL ASP SER GLU LEU HIS LEU PHE ASP GLY SEQRES 24 B 351 LEU PRO HIS ALA PHE PHE VAL TRP PRO ASP MET PRO GLU SEQRES 25 B 351 SER LEU GLU ALA TYR ALA LEU ILE ALA GLY PHE PHE ASP SEQRES 26 B 351 SER ARG LEU GLY LEU THR PRO SER SER SER ILE PRO THR SEQRES 27 B 351 PRO ARG SER PRO SER LEU GLU HIS HIS HIS HIS HIS HIS HET CL A 401 1 HET PG6 A 402 17 HET PG6 A 403 14 HET MG A 404 1 HET PG6 B 401 14 HET MG B 402 1 HET MG B 403 1 HETNAM CL CHLORIDE ION HETNAM PG6 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]- HETNAM 2 PG6 ETHOXY}-ETHANE HETNAM MG MAGNESIUM ION FORMUL 3 CL CL 1- FORMUL 4 PG6 3(C12 H26 O6) FORMUL 6 MG 3(MG 2+) FORMUL 10 HOH *577(H2 O) HELIX 1 AA1 LEU A 14 LEU A 18 5 5 HELIX 2 AA2 SER A 25 ALA A 38 1 14 HELIX 3 AA3 ASP A 46 PHE A 69 1 24 HELIX 4 AA4 SER A 93 ARG A 97 5 5 HELIX 5 AA5 GLY A 114 GLY A 129 1 16 HELIX 6 AA6 PRO A 146 LEU A 160 1 15 HELIX 7 AA7 PRO A 164 ALA A 166 5 3 HELIX 8 AA8 SER A 174 GLU A 190 1 17 HELIX 9 AA9 ASP A 211 ALA A 216 1 6 HELIX 10 AB1 THR A 236 GLU A 240 5 5 HELIX 11 AB2 TYR A 250 THR A 253 5 4 HELIX 12 AB3 SER A 254 PHE A 260 1 7 HELIX 13 AB4 ALA A 274 ALA A 288 1 15 HELIX 14 AB5 ALA A 303 TRP A 307 5 5 HELIX 15 AB6 MET A 310 LEU A 328 1 19 HELIX 16 AB7 LEU B 14 LEU B 18 5 5 HELIX 17 AB8 SER B 25 ALA B 38 1 14 HELIX 18 AB9 ASP B 46 PHE B 69 1 24 HELIX 19 AC1 SER B 93 ARG B 97 5 5 HELIX 20 AC2 GLY B 114 GLY B 129 1 16 HELIX 21 AC3 PRO B 146 LEU B 160 1 15 HELIX 22 AC4 PRO B 164 ALA B 166 5 3 HELIX 23 AC5 SER B 174 GLU B 190 1 17 HELIX 24 AC6 ASP B 211 ALA B 216 1 6 HELIX 25 AC7 THR B 236 GLU B 240 5 5 HELIX 26 AC8 TYR B 250 THR B 253 5 4 HELIX 27 AC9 SER B 254 PHE B 260 1 7 HELIX 28 AD1 ALA B 274 ALA B 288 1 15 HELIX 29 AD2 ALA B 303 TRP B 307 5 5 HELIX 30 AD3 MET B 310 LEU B 328 1 19 SHEET 1 AA1 8 THR A 71 LEU A 78 0 SHEET 2 AA1 8 VAL A 81 PRO A 88 -1 O VAL A 85 N ARG A 74 SHEET 3 AA1 8 VAL A 132 VAL A 135 -1 O VAL A 132 N VAL A 86 SHEET 4 AA1 8 VAL A 100 VAL A 104 1 N LEU A 101 O VAL A 133 SHEET 5 AA1 8 ILE A 168 THR A 173 1 O GLY A 169 N ILE A 102 SHEET 6 AA1 8 ALA A 197 LEU A 201 1 O LEU A 201 N GLY A 172 SHEET 7 AA1 8 THR A 264 GLY A 269 1 O LEU A 265 N THR A 200 SHEET 8 AA1 8 SER A 292 PHE A 297 1 O GLU A 293 N LEU A 266 SHEET 1 AA2 8 THR B 71 LEU B 78 0 SHEET 2 AA2 8 VAL B 81 PRO B 88 -1 O VAL B 85 N ARG B 74 SHEET 3 AA2 8 VAL B 132 VAL B 135 -1 O VAL B 132 N VAL B 86 SHEET 4 AA2 8 VAL B 100 VAL B 104 1 N LEU B 101 O VAL B 133 SHEET 5 AA2 8 ILE B 168 THR B 173 1 O GLY B 169 N ILE B 102 SHEET 6 AA2 8 ALA B 197 LEU B 201 1 O LEU B 201 N GLY B 172 SHEET 7 AA2 8 THR B 264 GLY B 269 1 O LEU B 265 N THR B 200 SHEET 8 AA2 8 SER B 292 PHE B 297 1 O GLU B 293 N LEU B 266 LINK MG MG A 404 O HOH A 529 1555 1555 2.12 LINK MG MG A 404 O HOH A 532 1555 1555 2.04 LINK MG MG A 404 O HOH A 705 1555 1555 2.13 LINK MG MG A 404 O HOH B 613 1555 1555 2.08 LINK MG MG A 404 O HOH B 743 1555 1555 2.08 LINK O HOH A 558 MG MG B 402 1555 1555 2.06 LINK MG MG B 402 O HOH B 531 1555 1555 2.13 LINK MG MG B 402 O HOH B 580 1555 1555 2.03 LINK MG MG B 402 O HOH B 718 1555 2645 2.09 LINK MG MG B 403 O HOH B 539 1555 1555 2.11 LINK MG MG B 403 O HOH B 547 1555 1555 2.80 LINK MG MG B 403 O HOH B 664 1555 1555 2.06 LINK MG MG B 403 O HOH B 689 1555 1555 2.09 CISPEP 1 ALA A 140 PRO A 141 0 -2.58 CISPEP 2 TYR A 145 PRO A 146 0 1.18 CISPEP 3 ALA B 140 PRO B 141 0 -4.44 CISPEP 4 TYR B 145 PRO B 146 0 2.08 SITE 1 AC1 7 HIS A 282 GLU A 293 LEU A 294 HIS B 282 SITE 2 AC1 7 GLU B 293 LEU B 294 HOH B 727 SITE 1 AC2 12 PHE A 109 SER A 174 ALA A 175 GLY A 203 SITE 2 AC2 12 THR A 204 ALA A 206 TYR A 208 PRO A 235 SITE 3 AC2 12 PHE A 273 ALA A 274 PG6 A 403 HOH A 658 SITE 1 AC3 12 SER A 174 ALA A 175 GLY A 203 THR A 204 SITE 2 AC3 12 ALA A 206 PRO A 207 TYR A 208 PHE A 273 SITE 3 AC3 12 ALA A 277 HIS A 302 PG6 A 402 HOH A 658 SITE 1 AC4 6 GLU A 293 HOH A 529 HOH A 532 HOH A 705 SITE 2 AC4 6 HOH B 613 HOH B 743 SITE 1 AC5 9 SER B 174 ALA B 175 GLY B 203 THR B 204 SITE 2 AC5 9 ALA B 206 PHE B 273 ALA B 274 ALA B 277 SITE 3 AC5 9 HOH B 702 SITE 1 AC6 4 HOH A 558 GLU B 293 HOH B 531 HOH B 580 SITE 1 AC7 6 ASN B 79 GLU B 161 HOH B 539 HOH B 547 SITE 2 AC7 6 HOH B 664 HOH B 689 CRYST1 47.140 92.180 74.460 90.00 106.41 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021213 0.000000 0.006247 0.00000 SCALE2 0.000000 0.010848 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014000 0.00000