HEADER LIGASE 01-FEB-19 6QLY TITLE IDOL FERM DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE MYLIP; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INDUCIBLE DEGRADER OF THE LDL-RECEPTOR,IDOL,MYOSIN COMPND 5 REGULATORY LIGHT CHAIN INTERACTING PROTEIN,MIR,RING-TYPE E3 UBIQUITIN COMPND 6 TRANSFERASE MYLIP; COMPND 7 EC: 2.3.2.27; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYLIP, BZF1, IDOL, BM-023, PP5242; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: T1R; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETNKI-HISSUMO3-LIC KEYWDS FERM DOMAIN; UBIQUITIN E3 LIGASE CHOLESTEROL METABOLISM, LDLR KEYWDS 2 DEGRADATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR L.MARTINELLI,T.K.SIXMA REVDAT 4 24-JAN-24 6QLY 1 REMARK REVDAT 3 07-OCT-20 6QLY 1 JRNL REVDAT 2 12-AUG-20 6QLY 1 JRNL REVDAT 1 19-FEB-20 6QLY 0 JRNL AUTH L.MARTINELLI,A.ADAMOPOULOS,P.JOHANSSON,P.T.WAN,J.GUNNARSSON, JRNL AUTH 2 H.GUO,H.BOYD,N.ZELCER,T.K.SIXMA JRNL TITL STRUCTURAL ANALYSIS OF THE LDL RECEPTOR-INTERACTING FERM JRNL TITL 2 DOMAIN IN THE E3 UBIQUITIN LIGASE IDOL REVEALS AN OBSCURED JRNL TITL 3 SUBSTRATE-BINDING SITE. JRNL REF J.BIOL.CHEM. V. 295 13570 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32727844 JRNL DOI 10.1074/JBC.RA120.014349 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 841 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2766 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2192 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2636 REMARK 3 BIN R VALUE (WORKING SET) : 0.2182 REMARK 3 BIN FREE R VALUE : 0.2395 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 130 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2611 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 86.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 113.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.92390 REMARK 3 B22 (A**2) : -8.92390 REMARK 3 B33 (A**2) : 17.84790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.430 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.338 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.238 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.338 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.241 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2667 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3594 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 951 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 450 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2667 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 343 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2844 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.33 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.84 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -47.6755 -5.0946 9.7951 REMARK 3 T TENSOR REMARK 3 T11: 0.0179 T22: 0.0025 REMARK 3 T33: -0.1460 T12: -0.0695 REMARK 3 T13: -0.0101 T23: 0.1946 REMARK 3 L TENSOR REMARK 3 L11: 2.6685 L22: 0.2789 REMARK 3 L33: 0.2999 L12: -1.0844 REMARK 3 L13: 0.2010 L23: -0.0973 REMARK 3 S TENSOR REMARK 3 S11: 0.0438 S12: 0.7422 S13: 0.6873 REMARK 3 S21: 0.0607 S22: -0.2015 S23: -0.0966 REMARK 3 S31: -0.1881 S32: 0.0946 S33: 0.1577 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QLY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100399. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19675 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 56.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 6.80500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3QIJ REMARK 200 REMARK 200 REMARK: PYRAMIDAL-LIKE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS PH 8.5, 20MM MGSO4, 4% REMARK 280 (W/V) ETHYLENE GLYCOL, 12% (W/V) 2-METHYL-2,4-PENTANEDIOL (MPD), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 79.74500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 79.74500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.36100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 79.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.18050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 79.74500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.54150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 79.74500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.54150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.74500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.18050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 79.74500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 79.74500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.36100 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 79.74500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 79.74500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 38.36100 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 79.74500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 57.54150 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 79.74500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 19.18050 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 79.74500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 19.18050 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 79.74500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 57.54150 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 79.74500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 79.74500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 38.36100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -79.74500 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 79.74500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.36100 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -159.49000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 -79.74500 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -79.74500 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 38.36100 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 303 REMARK 465 ASN A 304 REMARK 465 ILE A 305 REMARK 465 ASN A 306 REMARK 465 ALA A 333 REMARK 465 GLY A 334 REMARK 465 VAL A 335 REMARK 465 VAL A 336 REMARK 465 ASP A 337 REMARK 465 LEU A 338 REMARK 465 VAL A 339 REMARK 465 SER A 340 REMARK 465 ARG A 341 REMARK 465 ASN A 342 REMARK 465 ASN A 343 REMARK 465 GLN A 344 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 67 -72.26 -44.03 REMARK 500 ALA A 136 53.34 -160.52 REMARK 500 SER A 149 -136.88 49.98 REMARK 500 VAL A 192 -169.85 -122.32 REMARK 500 SER A 195 -101.84 56.91 REMARK 500 ARG A 221 59.45 -110.80 REMARK 500 TYR A 311 54.77 -93.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 DBREF 6QLY A 1 344 UNP Q8WY64 MYLIP_HUMAN 1 344 SEQADV 6QLY GLY A -1 UNP Q8WY64 EXPRESSION TAG SEQADV 6QLY GLY A 0 UNP Q8WY64 EXPRESSION TAG SEQRES 1 A 346 GLY GLY MET LEU CYS TYR VAL THR ARG PRO ASP ALA VAL SEQRES 2 A 346 LEU MET GLU VAL GLU VAL GLU ALA LYS ALA ASN GLY GLU SEQRES 3 A 346 ASP CYS LEU ASN GLN VAL CYS ARG ARG LEU GLY ILE ILE SEQRES 4 A 346 GLU VAL ASP TYR PHE GLY LEU GLN PHE THR GLY SER LYS SEQRES 5 A 346 GLY GLU SER LEU TRP LEU ASN LEU ARG ASN ARG ILE SER SEQRES 6 A 346 GLN GLN MET ASP GLY LEU ALA PRO TYR ARG LEU LYS LEU SEQRES 7 A 346 ARG VAL LYS PHE PHE VAL GLU PRO HIS LEU ILE LEU GLN SEQRES 8 A 346 GLU GLN THR ARG HIS ILE PHE PHE LEU HIS ILE LYS GLU SEQRES 9 A 346 ALA LEU LEU ALA GLY HIS LEU LEU CYS SER PRO GLU GLN SEQRES 10 A 346 ALA VAL GLU LEU SER ALA LEU LEU ALA GLN THR LYS PHE SEQRES 11 A 346 GLY ASP TYR ASN GLN ASN THR ALA LYS TYR ASN TYR GLU SEQRES 12 A 346 GLU LEU CYS ALA LYS GLU LEU SER SER ALA THR LEU ASN SEQRES 13 A 346 SER ILE VAL ALA LYS HIS LYS GLU LEU GLU GLY THR SER SEQRES 14 A 346 GLN ALA SER ALA GLU TYR GLN VAL LEU GLN ILE VAL SER SEQRES 15 A 346 ALA MET GLU ASN TYR GLY ILE GLU TRP HIS SER VAL ARG SEQRES 16 A 346 ASP SER GLU GLY GLN LYS LEU LEU ILE GLY VAL GLY PRO SEQRES 17 A 346 GLU GLY ILE SER ILE CYS LYS ASP ASP PHE SER PRO ILE SEQRES 18 A 346 ASN ARG ILE ALA TYR PRO VAL VAL GLN MET ALA THR GLN SEQRES 19 A 346 SER GLY LYS ASN VAL TYR LEU THR VAL THR LYS GLU SER SEQRES 20 A 346 GLY ASN SER ILE VAL LEU LEU PHE LYS MET ILE SER THR SEQRES 21 A 346 ARG ALA ALA SER GLY LEU TYR ARG ALA ILE THR GLU THR SEQRES 22 A 346 HIS ALA PHE TYR ARG CYS ASP THR VAL THR SER ALA VAL SEQRES 23 A 346 MET MET GLN TYR SER ARG ASP LEU LYS GLY HIS LEU ALA SEQRES 24 A 346 SER LEU PHE LEU ASN GLU ASN ILE ASN LEU GLY LYS LYS SEQRES 25 A 346 TYR VAL PHE ASP ILE LYS ARG THR SER LYS GLU VAL TYR SEQRES 26 A 346 ASP HIS ALA ARG ARG ALA LEU TYR ASN ALA GLY VAL VAL SEQRES 27 A 346 ASP LEU VAL SER ARG ASN ASN GLN HET SO4 A 401 5 HET EDO A 402 4 HET EDO A 403 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SO4 O4 S 2- FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *38(H2 O) HELIX 1 AA1 ASN A 22 GLY A 35 1 14 HELIX 2 AA2 GLU A 38 ASP A 40 5 3 HELIX 3 AA3 ARG A 61 MET A 66 1 6 HELIX 4 AA4 GLU A 83 ILE A 87 5 5 HELIX 5 AA5 GLN A 89 ALA A 106 1 18 HELIX 6 AA6 SER A 112 PHE A 128 1 17 HELIX 7 AA7 SER A 149 LEU A 163 1 15 HELIX 8 AA8 SER A 167 MET A 182 1 16 HELIX 9 AA9 SER A 257 CYS A 277 1 21 HELIX 10 AB1 THR A 279 LEU A 299 1 21 HELIX 11 AB2 THR A 318 ASN A 332 1 15 SHEET 1 AA1 5 LEU A 12 GLU A 16 0 SHEET 2 AA1 5 LEU A 2 THR A 6 -1 N CYS A 3 O VAL A 15 SHEET 3 AA1 5 TYR A 72 VAL A 78 1 O TYR A 72 N TYR A 4 SHEET 4 AA1 5 PHE A 42 THR A 47 -1 N GLN A 45 O LYS A 75 SHEET 5 AA1 5 SER A 53 TRP A 55 -1 O LEU A 54 N PHE A 46 SHEET 1 AA2 3 GLU A 188 SER A 191 0 SHEET 2 AA2 3 LEU A 201 VAL A 204 -1 O VAL A 204 N GLU A 188 SHEET 3 AA2 3 ILE A 209 CYS A 212 -1 O SER A 210 N GLY A 203 SHEET 1 AA3 3 VAL A 227 SER A 233 0 SHEET 2 AA3 3 ASN A 236 THR A 242 -1 O TYR A 238 N THR A 231 SHEET 3 AA3 3 SER A 248 LYS A 254 -1 O LEU A 251 N LEU A 239 CISPEP 1 ALA A 70 PRO A 71 0 3.24 SITE 1 AC1 4 VAL A 227 GLN A 228 ILE A 268 ARG A 290 SITE 1 AC2 4 GLN A 125 GLY A 129 THR A 166 GLN A 168 SITE 1 AC3 6 ASN A 22 ARG A 59 ASN A 60 ARG A 61 SITE 2 AC3 6 GLN A 168 ALA A 169 CRYST1 159.490 159.490 76.722 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006270 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013034 0.00000