data_6QMQ # _entry.id 6QMQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.359 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6QMQ pdb_00006qmq 10.2210/pdb6qmq/pdb WWPDB D_1292100362 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6QMQ _pdbx_database_status.recvd_initial_deposition_date 2019-02-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kiehstaller, S.' 1 ? 'Jeganathan, S.' 2 ? 'Pearce, N.M.' 3 ? 'Wendt, M.' 4 ? 'Grossmann, T.N.' 5 ? 'Hennig, S.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 58 _citation.language ? _citation.page_first 17351 _citation.page_last 17358 _citation.title 'Constrained Peptides with Fine-Tuned Flexibility Inhibit NF-Y Transcription Factor Assembly.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201907901 _citation.pdbx_database_id_PubMed 31539186 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jeganathan, S.' 1 ? primary 'Wendt, M.' 2 ? primary 'Kiehstaller, S.' 3 ? primary 'Brancaccio, D.' 4 ? primary 'Kuepper, A.' 5 ? primary 'Pospiech, N.' 6 ? primary 'Carotenuto, A.' 7 ? primary 'Novellino, E.' 8 ? primary 'Hennig, S.' 9 ? primary 'Grossmann, T.N.' 10 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6QMQ _cell.details ? _cell.formula_units_Z ? _cell.length_a 45.010 _cell.length_a_esd ? _cell.length_b 52.210 _cell.length_b_esd ? _cell.length_c 72.990 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QMQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Nuclear transcription factor Y subunit alpha' 2369.926 1 ? ? ? ? 2 polymer man 'Nuclear transcription factor Y subunit beta' 10876.456 1 ? ? ? ? 3 polymer man 'Nuclear transcription factor Y subunit gamma' 11258.227 1 ? ? ? ? 4 non-polymer nat 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 7 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'CAAT box DNA-binding protein subunit A,Nuclear transcription factor Y subunit A,NF-YA' 2 'CAAT box DNA-binding protein subunit B,Nuclear transcription factor Y subunit B,NF-YB' 3 'CAAT box DNA-binding protein subunit C,Nuclear transcription factor Y subunit C,NF-YC,Transactivator HSM-1/2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(ACE)VNAKQ(IC0)HRI(MH8)KRRQARAKL(NH2)' XVNAKQXHRIXKRRQARAKLX A ? 2 'polypeptide(L)' no no ;GPSFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFD SYVEPLKLYLQKFRE ; ;GPSFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFD SYVEPLKLYLQKFRE ; B ? 3 'polypeptide(L)' no no ;GPMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA ITKFDQFDFLIDIVPR ; ;GPMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA ITKFDQFDFLIDIVPR ; C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 VAL n 1 3 ASN n 1 4 ALA n 1 5 LYS n 1 6 GLN n 1 7 IC0 n 1 8 HIS n 1 9 ARG n 1 10 ILE n 1 11 MH8 n 1 12 LYS n 1 13 ARG n 1 14 ARG n 1 15 GLN n 1 16 ALA n 1 17 ARG n 1 18 ALA n 1 19 LYS n 1 20 LEU n 1 21 NH2 n 2 1 GLY n 2 2 PRO n 2 3 SER n 2 4 PHE n 2 5 ARG n 2 6 GLU n 2 7 GLN n 2 8 ASP n 2 9 ILE n 2 10 TYR n 2 11 LEU n 2 12 PRO n 2 13 ILE n 2 14 ALA n 2 15 ASN n 2 16 VAL n 2 17 ALA n 2 18 ARG n 2 19 ILE n 2 20 MET n 2 21 LYS n 2 22 ASN n 2 23 ALA n 2 24 ILE n 2 25 PRO n 2 26 GLN n 2 27 THR n 2 28 GLY n 2 29 LYS n 2 30 ILE n 2 31 ALA n 2 32 LYS n 2 33 ASP n 2 34 ALA n 2 35 LYS n 2 36 GLU n 2 37 CYS n 2 38 VAL n 2 39 GLN n 2 40 GLU n 2 41 CYS n 2 42 VAL n 2 43 SER n 2 44 GLU n 2 45 PHE n 2 46 ILE n 2 47 SER n 2 48 PHE n 2 49 ILE n 2 50 THR n 2 51 SER n 2 52 GLU n 2 53 ALA n 2 54 SER n 2 55 GLU n 2 56 ARG n 2 57 CYS n 2 58 HIS n 2 59 GLN n 2 60 GLU n 2 61 LYS n 2 62 ARG n 2 63 LYS n 2 64 THR n 2 65 ILE n 2 66 ASN n 2 67 GLY n 2 68 GLU n 2 69 ASP n 2 70 ILE n 2 71 LEU n 2 72 PHE n 2 73 ALA n 2 74 MET n 2 75 SER n 2 76 THR n 2 77 LEU n 2 78 GLY n 2 79 PHE n 2 80 ASP n 2 81 SER n 2 82 TYR n 2 83 VAL n 2 84 GLU n 2 85 PRO n 2 86 LEU n 2 87 LYS n 2 88 LEU n 2 89 TYR n 2 90 LEU n 2 91 GLN n 2 92 LYS n 2 93 PHE n 2 94 ARG n 2 95 GLU n 3 1 GLY n 3 2 PRO n 3 3 MET n 3 4 GLU n 3 5 GLU n 3 6 ILE n 3 7 ARG n 3 8 ASN n 3 9 LEU n 3 10 THR n 3 11 VAL n 3 12 LYS n 3 13 ASP n 3 14 PHE n 3 15 ARG n 3 16 VAL n 3 17 GLN n 3 18 GLU n 3 19 LEU n 3 20 PRO n 3 21 LEU n 3 22 ALA n 3 23 ARG n 3 24 ILE n 3 25 LYS n 3 26 LYS n 3 27 ILE n 3 28 MET n 3 29 LYS n 3 30 LEU n 3 31 ASP n 3 32 GLU n 3 33 ASP n 3 34 VAL n 3 35 LYS n 3 36 MET n 3 37 ILE n 3 38 SER n 3 39 ALA n 3 40 GLU n 3 41 ALA n 3 42 PRO n 3 43 VAL n 3 44 LEU n 3 45 PHE n 3 46 ALA n 3 47 LYS n 3 48 ALA n 3 49 ALA n 3 50 GLN n 3 51 ILE n 3 52 PHE n 3 53 ILE n 3 54 THR n 3 55 GLU n 3 56 LEU n 3 57 THR n 3 58 LEU n 3 59 ARG n 3 60 ALA n 3 61 TRP n 3 62 ILE n 3 63 HIS n 3 64 THR n 3 65 GLU n 3 66 ASP n 3 67 ASN n 3 68 LYS n 3 69 ARG n 3 70 ARG n 3 71 THR n 3 72 LEU n 3 73 GLN n 3 74 ARG n 3 75 ASN n 3 76 ASP n 3 77 ILE n 3 78 ALA n 3 79 MET n 3 80 ALA n 3 81 ILE n 3 82 THR n 3 83 LYS n 3 84 PHE n 3 85 ASP n 3 86 GLN n 3 87 PHE n 3 88 ASP n 3 89 PHE n 3 90 LEU n 3 91 ILE n 3 92 ASP n 3 93 ILE n 3 94 VAL n 3 95 PRO n 3 96 ARG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 2 1 sample 'Biological sequence' 1 95 human ? 'NFYB, HAP3' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 96 human ? NFYC ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 21 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP NFYA_HUMAN P23511 ? 1 VNAKQYHRILKRRQARAKL 267 2 UNP NFYB_HUMAN P25208 ? 2 ;SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSY VEPLKLYLQKFRE ; 51 3 UNP NFYC_HUMAN Q13952 ? 3 ;MEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT KFDQFDFLIDIVPR ; 27 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6QMQ A 2 ? 20 ? P23511 267 ? 285 ? 302 320 2 2 6QMQ B 3 ? 95 ? P25208 51 ? 143 ? 51 143 3 3 6QMQ C 3 ? 96 ? Q13952 27 ? 120 ? 27 120 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6QMQ ACE A 1 ? UNP P23511 ? ? acetylation 301 1 1 6QMQ IC0 A 7 ? UNP P23511 TYR 272 'engineered mutation' 307 2 1 6QMQ MH8 A 11 ? UNP P23511 LEU 276 'engineered mutation' 311 3 1 6QMQ NH2 A 21 ? UNP P23511 ? ? amidation 321 4 2 6QMQ GLY B 1 ? UNP P25208 ? ? 'expression tag' 49 5 2 6QMQ PRO B 2 ? UNP P25208 ? ? 'expression tag' 50 6 3 6QMQ GLY C 1 ? UNP Q13952 ? ? 'expression tag' 25 7 3 6QMQ PRO C 2 ? UNP Q13952 ? ? 'expression tag' 26 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 IC0 'L-peptide linking' n 'Fmoc-(S)-2-(4-pentenyl)-glycine' '(2S)-2-azanylhept-6-enoic acid' 'C7 H13 N O2' 143.184 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MH8 'L-peptide linking' . '(2S)-2-amino-2-methylhept-6-enoic acid' ? 'C8 H15 N O2' 157.210 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6QMQ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.1 M sodium cacodylate pH6.5 0.2 M calcium acetate 37% PEG600 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-09-29 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.977930 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.977930 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6QMQ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.500 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6325 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.200 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.070 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.500 _reflns_shell.d_res_low 2.600 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.180 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 682 _reflns_shell.percent_possible_all 100.000 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 12.900 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.665 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -0.4600 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][2] 0.3700 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] 0.0800 _refine.B_iso_max 140.620 _refine.B_iso_mean 66.7210 _refine.B_iso_min 31.230 _refine.correlation_coeff_Fo_to_Fc 0.9680 _refine.correlation_coeff_Fo_to_Fc_free 0.9360 _refine.details 'U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6QMQ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.5000 _refine.ls_d_res_low 19.8900 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5661 _refine.ls_number_reflns_R_free 635 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.6700 _refine.ls_percent_reflns_R_free 10.1000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1795 _refine.ls_R_factor_R_free 0.2412 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1724 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4CSR _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.3280 _refine.pdbx_solvent_vdw_probe_radii 1.0000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 27.0010 _refine.overall_SU_ML 0.2660 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.5000 _refine_hist.d_res_low 19.8900 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 1554 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 187 _refine_hist.pdbx_B_iso_mean_ligand 40.35 _refine_hist.pdbx_B_iso_mean_solvent 49.78 _refine_hist.pdbx_number_atoms_protein 1526 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.014 0.018 1573 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 1591 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.627 1.889 2104 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.145 2.717 3657 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.601 5.000 182 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 35.790 21.307 88 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 18.572 15.000 312 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 15.199 15.000 14 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.094 0.200 238 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 0.020 1724 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 364 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.5000 _refine_ls_shell.d_res_low 2.5650 _refine_ls_shell.number_reflns_all 444 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.number_reflns_R_work 402 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3470 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2480 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6QMQ _struct.title 'NF-YB/C Heterodimer in Complex with NF-YA-derived Peptide Stabilized with C8-Hydrocarbon Linker' _struct.pdbx_structure_determination_methodology ? _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6QMQ _struct_keywords.text 'stapled peptide histone fold transcription factor, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 3 ? LYS A 19 ? ASN A 303 LYS A 319 1 ? 17 HELX_P HELX_P2 AA2 PRO B 12 ? ILE B 24 ? PRO B 60 ILE B 72 1 ? 13 HELX_P HELX_P3 AA3 ALA B 31 ? GLU B 60 ? ALA B 79 GLU B 108 1 ? 30 HELX_P HELX_P4 AA4 ASN B 66 ? LEU B 77 ? ASN B 114 LEU B 125 1 ? 12 HELX_P HELX_P5 AA5 PHE B 79 ? SER B 81 ? PHE B 127 SER B 129 5 ? 3 HELX_P HELX_P6 AA6 TYR B 82 ? GLU B 95 ? TYR B 130 GLU B 143 1 ? 14 HELX_P HELX_P7 AA7 ASP C 13 ? GLU C 18 ? ASP C 37 GLU C 42 1 ? 6 HELX_P HELX_P8 AA8 PRO C 20 ? LYS C 29 ? PRO C 44 LYS C 53 1 ? 10 HELX_P HELX_P9 AA9 ALA C 39 ? ASN C 67 ? ALA C 63 ASN C 91 1 ? 29 HELX_P HELX_P10 AB1 GLN C 73 ? PHE C 84 ? GLN C 97 PHE C 108 1 ? 12 HELX_P HELX_P11 AB2 ASP C 85 ? ILE C 91 ? ASP C 109 ILE C 115 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A VAL 2 N ? ? A ACE 301 A VAL 302 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale2 covale both ? A GLN 6 C ? ? ? 1_555 A IC0 7 N ? ? A GLN 306 A IC0 307 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale3 covale both ? A IC0 7 C ? ? ? 1_555 A HIS 8 N ? ? A IC0 307 A HIS 308 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale4 covale one ? A IC0 7 C7 ? ? ? 1_555 A MH8 11 CD ? ? A IC0 307 A MH8 311 1_555 ? ? ? ? ? ? ? 1.476 ? ? covale5 covale one ? A ILE 10 C ? ? ? 1_555 A MH8 11 N ? ? A ILE 310 A MH8 311 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale6 covale both ? A MH8 11 C ? ? ? 1_555 A LYS 12 N ? ? A MH8 311 A LYS 312 1_555 ? ? ? ? ? ? ? 1.339 ? ? metalc1 metalc ? ? A ACE 1 O ? ? ? 1_555 D NA . NA ? ? A ACE 301 C NA 201 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc2 metalc ? ? B GLU 60 OE1 ? ? ? 1_555 D NA . NA ? ? B GLU 108 C NA 201 4_554 ? ? ? ? ? ? ? 2.398 ? ? metalc3 metalc ? ? B GLU 60 OE2 ? ? ? 1_555 D NA . NA ? ? B GLU 108 C NA 201 4_554 ? ? ? ? ? ? ? 2.386 ? ? metalc4 metalc ? ? C ASP 85 OD1 ? ? ? 1_555 D NA . NA ? ? C ASP 109 C NA 201 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc5 metalc ? ? C ASP 88 OD1 ? ? ? 1_555 D NA . NA ? ? C ASP 112 C NA 201 1_555 ? ? ? ? ? ? ? 2.320 ? ? metalc6 metalc ? ? C ASP 88 OD2 ? ? ? 1_555 D NA . NA ? ? C ASP 112 C NA 201 1_555 ? ? ? ? ? ? ? 2.292 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA2 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS B 29 ? ILE B 30 ? LYS B 77 ILE B 78 AA1 2 THR C 71 ? LEU C 72 ? THR C 95 LEU C 96 AA2 1 THR B 64 ? ILE B 65 ? THR B 112 ILE B 113 AA2 2 MET C 36 ? ILE C 37 ? MET C 60 ILE C 61 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS B 29 ? N LYS B 77 O LEU C 72 ? O LEU C 96 AA2 1 2 N ILE B 65 ? N ILE B 113 O MET C 36 ? O MET C 60 # _atom_sites.entry_id 6QMQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.022217 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019153 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013701 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 301 266 ACE ACE A . n A 1 2 VAL 2 302 267 VAL VAL A . n A 1 3 ASN 3 303 268 ASN ASN A . n A 1 4 ALA 4 304 269 ALA ALA A . n A 1 5 LYS 5 305 270 LYS LYS A . n A 1 6 GLN 6 306 271 GLN GLN A . n A 1 7 IC0 7 307 272 IC0 S5D A . n A 1 8 HIS 8 308 273 HIS HIS A . n A 1 9 ARG 9 309 274 ARG ARG A . n A 1 10 ILE 10 310 275 ILE ILE A . n A 1 11 MH8 11 311 276 MH8 S5M A . n A 1 12 LYS 12 312 277 LYS LYS A . n A 1 13 ARG 13 313 278 ARG ARG A . n A 1 14 ARG 14 314 279 ARG ARG A . n A 1 15 GLN 15 315 280 GLN GLN A . n A 1 16 ALA 16 316 281 ALA ALA A . n A 1 17 ARG 17 317 282 ARG ARG A . n A 1 18 ALA 18 318 283 ALA ALA A . n A 1 19 LYS 19 319 284 LYS LYS A . n A 1 20 LEU 20 320 ? ? ? A . n A 1 21 NH2 21 321 ? ? ? A . n B 2 1 GLY 1 49 ? ? ? B . n B 2 2 PRO 2 50 ? ? ? B . n B 2 3 SER 3 51 ? ? ? B . n B 2 4 PHE 4 52 ? ? ? B . n B 2 5 ARG 5 53 ? ? ? B . n B 2 6 GLU 6 54 ? ? ? B . n B 2 7 GLN 7 55 ? ? ? B . n B 2 8 ASP 8 56 ? ? ? B . n B 2 9 ILE 9 57 57 ILE ILE B . n B 2 10 TYR 10 58 58 TYR TYR B . n B 2 11 LEU 11 59 59 LEU LEU B . n B 2 12 PRO 12 60 60 PRO PRO B . n B 2 13 ILE 13 61 61 ILE ILE B . n B 2 14 ALA 14 62 62 ALA ALA B . n B 2 15 ASN 15 63 63 ASN ASN B . n B 2 16 VAL 16 64 64 VAL VAL B . n B 2 17 ALA 17 65 65 ALA ALA B . n B 2 18 ARG 18 66 66 ARG ARG B . n B 2 19 ILE 19 67 67 ILE ILE B . n B 2 20 MET 20 68 68 MET MET B . n B 2 21 LYS 21 69 69 LYS LYS B . n B 2 22 ASN 22 70 70 ASN ASN B . n B 2 23 ALA 23 71 71 ALA ALA B . n B 2 24 ILE 24 72 72 ILE ILE B . n B 2 25 PRO 25 73 73 PRO PRO B . n B 2 26 GLN 26 74 74 GLN GLN B . n B 2 27 THR 27 75 75 THR THR B . n B 2 28 GLY 28 76 76 GLY GLY B . n B 2 29 LYS 29 77 77 LYS LYS B . n B 2 30 ILE 30 78 78 ILE ILE B . n B 2 31 ALA 31 79 79 ALA ALA B . n B 2 32 LYS 32 80 80 LYS LYS B . n B 2 33 ASP 33 81 81 ASP ASP B . n B 2 34 ALA 34 82 82 ALA ALA B . n B 2 35 LYS 35 83 83 LYS LYS B . n B 2 36 GLU 36 84 84 GLU GLU B . n B 2 37 CYS 37 85 85 CYS CYS B . n B 2 38 VAL 38 86 86 VAL VAL B . n B 2 39 GLN 39 87 87 GLN GLN B . n B 2 40 GLU 40 88 88 GLU GLU B . n B 2 41 CYS 41 89 89 CYS CYS B . n B 2 42 VAL 42 90 90 VAL VAL B . n B 2 43 SER 43 91 91 SER SER B . n B 2 44 GLU 44 92 92 GLU GLU B . n B 2 45 PHE 45 93 93 PHE PHE B . n B 2 46 ILE 46 94 94 ILE ILE B . n B 2 47 SER 47 95 95 SER SER B . n B 2 48 PHE 48 96 96 PHE PHE B . n B 2 49 ILE 49 97 97 ILE ILE B . n B 2 50 THR 50 98 98 THR THR B . n B 2 51 SER 51 99 99 SER SER B . n B 2 52 GLU 52 100 100 GLU GLU B . n B 2 53 ALA 53 101 101 ALA ALA B . n B 2 54 SER 54 102 102 SER SER B . n B 2 55 GLU 55 103 103 GLU GLU B . n B 2 56 ARG 56 104 104 ARG ARG B . n B 2 57 CYS 57 105 105 CYS CYS B . n B 2 58 HIS 58 106 106 HIS HIS B . n B 2 59 GLN 59 107 107 GLN GLN B . n B 2 60 GLU 60 108 108 GLU GLU B . n B 2 61 LYS 61 109 109 LYS LYS B . n B 2 62 ARG 62 110 110 ARG ARG B . n B 2 63 LYS 63 111 111 LYS LYS B . n B 2 64 THR 64 112 112 THR THR B . n B 2 65 ILE 65 113 113 ILE ILE B . n B 2 66 ASN 66 114 114 ASN ASN B . n B 2 67 GLY 67 115 115 GLY GLY B . n B 2 68 GLU 68 116 116 GLU GLU B . n B 2 69 ASP 69 117 117 ASP ASP B . n B 2 70 ILE 70 118 118 ILE ILE B . n B 2 71 LEU 71 119 119 LEU LEU B . n B 2 72 PHE 72 120 120 PHE PHE B . n B 2 73 ALA 73 121 121 ALA ALA B . n B 2 74 MET 74 122 122 MET MET B . n B 2 75 SER 75 123 123 SER SER B . n B 2 76 THR 76 124 124 THR THR B . n B 2 77 LEU 77 125 125 LEU LEU B . n B 2 78 GLY 78 126 126 GLY GLY B . n B 2 79 PHE 79 127 127 PHE PHE B . n B 2 80 ASP 80 128 128 ASP ASP B . n B 2 81 SER 81 129 129 SER SER B . n B 2 82 TYR 82 130 130 TYR TYR B . n B 2 83 VAL 83 131 131 VAL VAL B . n B 2 84 GLU 84 132 132 GLU GLU B . n B 2 85 PRO 85 133 133 PRO PRO B . n B 2 86 LEU 86 134 134 LEU LEU B . n B 2 87 LYS 87 135 135 LYS LYS B . n B 2 88 LEU 88 136 136 LEU LEU B . n B 2 89 TYR 89 137 137 TYR TYR B . n B 2 90 LEU 90 138 138 LEU LEU B . n B 2 91 GLN 91 139 139 GLN GLN B . n B 2 92 LYS 92 140 140 LYS LYS B . n B 2 93 PHE 93 141 141 PHE PHE B . n B 2 94 ARG 94 142 142 ARG ARG B . n B 2 95 GLU 95 143 143 GLU GLU B . n C 3 1 GLY 1 25 ? ? ? C . n C 3 2 PRO 2 26 ? ? ? C . n C 3 3 MET 3 27 ? ? ? C . n C 3 4 GLU 4 28 ? ? ? C . n C 3 5 GLU 5 29 ? ? ? C . n C 3 6 ILE 6 30 ? ? ? C . n C 3 7 ARG 7 31 ? ? ? C . n C 3 8 ASN 8 32 ? ? ? C . n C 3 9 LEU 9 33 ? ? ? C . n C 3 10 THR 10 34 ? ? ? C . n C 3 11 VAL 11 35 ? ? ? C . n C 3 12 LYS 12 36 36 LYS LYS C . n C 3 13 ASP 13 37 37 ASP ASP C . n C 3 14 PHE 14 38 38 PHE PHE C . n C 3 15 ARG 15 39 39 ARG ARG C . n C 3 16 VAL 16 40 40 VAL VAL C . n C 3 17 GLN 17 41 41 GLN GLN C . n C 3 18 GLU 18 42 42 GLU GLU C . n C 3 19 LEU 19 43 43 LEU LEU C . n C 3 20 PRO 20 44 44 PRO PRO C . n C 3 21 LEU 21 45 45 LEU LEU C . n C 3 22 ALA 22 46 46 ALA ALA C . n C 3 23 ARG 23 47 47 ARG ARG C . n C 3 24 ILE 24 48 48 ILE ILE C . n C 3 25 LYS 25 49 49 LYS LYS C . n C 3 26 LYS 26 50 50 LYS LYS C . n C 3 27 ILE 27 51 51 ILE ILE C . n C 3 28 MET 28 52 52 MET MET C . n C 3 29 LYS 29 53 53 LYS LYS C . n C 3 30 LEU 30 54 54 LEU LEU C . n C 3 31 ASP 31 55 55 ASP ASP C . n C 3 32 GLU 32 56 56 GLU GLU C . n C 3 33 ASP 33 57 57 ASP ASP C . n C 3 34 VAL 34 58 58 VAL VAL C . n C 3 35 LYS 35 59 59 LYS LYS C . n C 3 36 MET 36 60 60 MET MET C . n C 3 37 ILE 37 61 61 ILE ILE C . n C 3 38 SER 38 62 62 SER SER C . n C 3 39 ALA 39 63 63 ALA ALA C . n C 3 40 GLU 40 64 64 GLU GLU C . n C 3 41 ALA 41 65 65 ALA ALA C . n C 3 42 PRO 42 66 66 PRO PRO C . n C 3 43 VAL 43 67 67 VAL VAL C . n C 3 44 LEU 44 68 68 LEU LEU C . n C 3 45 PHE 45 69 69 PHE PHE C . n C 3 46 ALA 46 70 70 ALA ALA C . n C 3 47 LYS 47 71 71 LYS LYS C . n C 3 48 ALA 48 72 72 ALA ALA C . n C 3 49 ALA 49 73 73 ALA ALA C . n C 3 50 GLN 50 74 74 GLN GLN C . n C 3 51 ILE 51 75 75 ILE ILE C . n C 3 52 PHE 52 76 76 PHE PHE C . n C 3 53 ILE 53 77 77 ILE ILE C . n C 3 54 THR 54 78 78 THR THR C . n C 3 55 GLU 55 79 79 GLU GLU C . n C 3 56 LEU 56 80 80 LEU LEU C . n C 3 57 THR 57 81 81 THR THR C . n C 3 58 LEU 58 82 82 LEU LEU C . n C 3 59 ARG 59 83 83 ARG ARG C . n C 3 60 ALA 60 84 84 ALA ALA C . n C 3 61 TRP 61 85 85 TRP TRP C . n C 3 62 ILE 62 86 86 ILE ILE C . n C 3 63 HIS 63 87 87 HIS HIS C . n C 3 64 THR 64 88 88 THR THR C . n C 3 65 GLU 65 89 89 GLU GLU C . n C 3 66 ASP 66 90 90 ASP ASP C . n C 3 67 ASN 67 91 91 ASN ASN C . n C 3 68 LYS 68 92 92 LYS LYS C . n C 3 69 ARG 69 93 93 ARG ARG C . n C 3 70 ARG 70 94 94 ARG ARG C . n C 3 71 THR 71 95 95 THR THR C . n C 3 72 LEU 72 96 96 LEU LEU C . n C 3 73 GLN 73 97 97 GLN GLN C . n C 3 74 ARG 74 98 98 ARG ARG C . n C 3 75 ASN 75 99 99 ASN ASN C . n C 3 76 ASP 76 100 100 ASP ASP C . n C 3 77 ILE 77 101 101 ILE ILE C . n C 3 78 ALA 78 102 102 ALA ALA C . n C 3 79 MET 79 103 103 MET MET C . n C 3 80 ALA 80 104 104 ALA ALA C . n C 3 81 ILE 81 105 105 ILE ILE C . n C 3 82 THR 82 106 106 THR THR C . n C 3 83 LYS 83 107 107 LYS LYS C . n C 3 84 PHE 84 108 108 PHE PHE C . n C 3 85 ASP 85 109 109 ASP ASP C . n C 3 86 GLN 86 110 110 GLN GLN C . n C 3 87 PHE 87 111 111 PHE PHE C . n C 3 88 ASP 88 112 112 ASP ASP C . n C 3 89 PHE 89 113 113 PHE PHE C . n C 3 90 LEU 90 114 114 LEU LEU C . n C 3 91 ILE 91 115 115 ILE ILE C . n C 3 92 ASP 92 116 116 ASP ASP C . n C 3 93 ILE 93 117 117 ILE ILE C . n C 3 94 VAL 94 118 118 VAL VAL C . n C 3 95 PRO 95 119 119 PRO PRO C . n C 3 96 ARG 96 120 ? ? ? C . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email s.hennig@vu.nl _pdbx_contact_author.name_first Sven _pdbx_contact_author.name_last Hennig _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-8297-6845 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA 1 201 201 NA NA C . E 5 HOH 1 401 3 HOH HOH A . E 5 HOH 2 402 302 HOH HOH A . F 5 HOH 1 201 1 HOH HOH B . F 5 HOH 2 202 2 HOH HOH B . F 5 HOH 3 203 202 HOH HOH B . F 5 HOH 4 204 207 HOH HOH B . G 5 HOH 1 301 305 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6510 ? 1 MORE -58 ? 1 'SSA (A^2)' 9840 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ACE 1 ? A ACE 301 ? 1_555 NA ? D NA . ? C NA 201 ? 1_555 OE1 ? B GLU 60 ? B GLU 108 ? 1_555 87.1 ? 2 O ? A ACE 1 ? A ACE 301 ? 1_555 NA ? D NA . ? C NA 201 ? 1_555 OE2 ? B GLU 60 ? B GLU 108 ? 1_555 83.8 ? 3 OE1 ? B GLU 60 ? B GLU 108 ? 1_555 NA ? D NA . ? C NA 201 ? 1_555 OE2 ? B GLU 60 ? B GLU 108 ? 1_555 3.3 ? 4 O ? A ACE 1 ? A ACE 301 ? 1_555 NA ? D NA . ? C NA 201 ? 1_555 OD1 ? C ASP 85 ? C ASP 109 ? 1_555 80.6 ? 5 OE1 ? B GLU 60 ? B GLU 108 ? 1_555 NA ? D NA . ? C NA 201 ? 1_555 OD1 ? C ASP 85 ? C ASP 109 ? 1_555 75.8 ? 6 OE2 ? B GLU 60 ? B GLU 108 ? 1_555 NA ? D NA . ? C NA 201 ? 1_555 OD1 ? C ASP 85 ? C ASP 109 ? 1_555 75.2 ? 7 O ? A ACE 1 ? A ACE 301 ? 1_555 NA ? D NA . ? C NA 201 ? 1_555 OD1 ? C ASP 88 ? C ASP 112 ? 1_555 144.0 ? 8 OE1 ? B GLU 60 ? B GLU 108 ? 1_555 NA ? D NA . ? C NA 201 ? 1_555 OD1 ? C ASP 88 ? C ASP 112 ? 1_555 59.1 ? 9 OE2 ? B GLU 60 ? B GLU 108 ? 1_555 NA ? D NA . ? C NA 201 ? 1_555 OD1 ? C ASP 88 ? C ASP 112 ? 1_555 62.3 ? 10 OD1 ? C ASP 85 ? C ASP 109 ? 1_555 NA ? D NA . ? C NA 201 ? 1_555 OD1 ? C ASP 88 ? C ASP 112 ? 1_555 100.6 ? 11 O ? A ACE 1 ? A ACE 301 ? 1_555 NA ? D NA . ? C NA 201 ? 1_555 OD2 ? C ASP 88 ? C ASP 112 ? 1_555 87.4 ? 12 OE1 ? B GLU 60 ? B GLU 108 ? 1_555 NA ? D NA . ? C NA 201 ? 1_555 OD2 ? C ASP 88 ? C ASP 112 ? 1_555 18.0 ? 13 OE2 ? B GLU 60 ? B GLU 108 ? 1_555 NA ? D NA . ? C NA 201 ? 1_555 OD2 ? C ASP 88 ? C ASP 112 ? 1_555 18.5 ? 14 OD1 ? C ASP 85 ? C ASP 109 ? 1_555 NA ? D NA . ? C NA 201 ? 1_555 OD2 ? C ASP 88 ? C ASP 112 ? 1_555 93.6 ? 15 OD1 ? C ASP 88 ? C ASP 112 ? 1_555 NA ? D NA . ? C NA 201 ? 1_555 OD2 ? C ASP 88 ? C ASP 112 ? 1_555 56.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-10-02 2 'Structure model' 1 1 2019-10-30 3 'Structure model' 1 2 2019-11-27 4 'Structure model' 2 0 2022-05-18 5 'Structure model' 3 0 2022-07-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' author 'Coordinate replacement' 'Ligand geometry' 'Improved ligand description and more chemical meaningful positioning of crosslink' # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Database references' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Author supporting evidence' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Derived calculations' 10 4 'Structure model' 'Non-polymer description' 11 4 'Structure model' Other 12 4 'Structure model' 'Polymer sequence' 13 4 'Structure model' 'Refinement description' 14 4 'Structure model' 'Source and taxonomy' 15 4 'Structure model' 'Structure summary' 16 5 'Structure model' 'Polymer sequence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 4 'Structure model' atom_site 4 4 'Structure model' atom_site_anisotrop 5 4 'Structure model' atom_sites 6 4 'Structure model' audit_author 7 4 'Structure model' chem_comp 8 4 'Structure model' database_2 9 4 'Structure model' entity 10 4 'Structure model' entity_name_com 11 4 'Structure model' entity_poly 12 4 'Structure model' entity_poly_seq 13 4 'Structure model' entity_src_gen 14 4 'Structure model' pdbx_audit_support 15 4 'Structure model' pdbx_contact_author 16 4 'Structure model' pdbx_distant_solvent_atoms 17 4 'Structure model' pdbx_entity_src_syn 18 4 'Structure model' pdbx_entry_details 19 4 'Structure model' pdbx_nonpoly_scheme 20 4 'Structure model' pdbx_poly_seq_scheme 21 4 'Structure model' pdbx_refine_tls 22 4 'Structure model' pdbx_refine_tls_group 23 4 'Structure model' pdbx_struct_assembly_prop 24 4 'Structure model' pdbx_struct_conn_angle 25 4 'Structure model' pdbx_struct_sheet_hbond 26 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 27 4 'Structure model' pdbx_unobs_or_zero_occ_residues 28 4 'Structure model' pdbx_validate_torsion 29 4 'Structure model' refine 30 4 'Structure model' refine_hist 31 4 'Structure model' refine_ls_restr 32 4 'Structure model' refine_ls_shell 33 4 'Structure model' software 34 4 'Structure model' struct_conf 35 4 'Structure model' struct_conn 36 4 'Structure model' struct_conn_type 37 4 'Structure model' struct_ref 38 4 'Structure model' struct_ref_seq 39 4 'Structure model' struct_ref_seq_dif 40 4 'Structure model' struct_sheet_range 41 4 'Structure model' struct_site 42 4 'Structure model' struct_site_gen 43 5 'Structure model' entity_poly # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.title' 2 3 'Structure model' '_citation.journal_volume' 3 3 'Structure model' '_citation.page_first' 4 3 'Structure model' '_citation.page_last' 5 4 'Structure model' '_atom_sites.fract_transf_matrix[2][1]' 6 4 'Structure model' '_atom_sites.fract_transf_matrix[3][2]' 7 4 'Structure model' '_chem_comp.formula' 8 4 'Structure model' '_chem_comp.formula_weight' 9 4 'Structure model' '_chem_comp.id' 10 4 'Structure model' '_chem_comp.mon_nstd_flag' 11 4 'Structure model' '_chem_comp.name' 12 4 'Structure model' '_chem_comp.pdbx_synonyms' 13 4 'Structure model' '_chem_comp.type' 14 4 'Structure model' '_database_2.pdbx_DOI' 15 4 'Structure model' '_database_2.pdbx_database_accession' 16 4 'Structure model' '_entity.formula_weight' 17 4 'Structure model' '_entity.pdbx_description' 18 4 'Structure model' '_entity.pdbx_number_of_molecules' 19 4 'Structure model' '_entity.src_method' 20 4 'Structure model' '_entity_poly.nstd_monomer' 21 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 22 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 23 4 'Structure model' '_entity_poly.pdbx_strand_id' 24 4 'Structure model' '_entity_poly_seq.entity_id' 25 4 'Structure model' '_entity_poly_seq.mon_id' 26 4 'Structure model' '_entity_poly_seq.num' 27 4 'Structure model' '_entity_src_gen.entity_id' 28 4 'Structure model' '_entity_src_gen.gene_src_common_name' 29 4 'Structure model' '_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id' 30 4 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 31 4 'Structure model' '_pdbx_audit_support.country' 32 4 'Structure model' '_pdbx_audit_support.funding_organization' 33 4 'Structure model' '_pdbx_contact_author.id' 34 4 'Structure model' '_pdbx_entity_src_syn.entity_id' 35 4 'Structure model' '_pdbx_entity_src_syn.organism_common_name' 36 4 'Structure model' '_pdbx_poly_seq_scheme.asym_id' 37 4 'Structure model' '_pdbx_poly_seq_scheme.auth_mon_id' 38 4 'Structure model' '_pdbx_poly_seq_scheme.auth_seq_num' 39 4 'Structure model' '_pdbx_poly_seq_scheme.entity_id' 40 4 'Structure model' '_pdbx_poly_seq_scheme.mon_id' 41 4 'Structure model' '_pdbx_poly_seq_scheme.ndb_seq_num' 42 4 'Structure model' '_pdbx_poly_seq_scheme.pdb_mon_id' 43 4 'Structure model' '_pdbx_poly_seq_scheme.pdb_seq_num' 44 4 'Structure model' '_pdbx_poly_seq_scheme.pdb_strand_id' 45 4 'Structure model' '_pdbx_poly_seq_scheme.seq_id' 46 4 'Structure model' '_pdbx_struct_assembly_prop.value' 47 4 'Structure model' '_pdbx_struct_sheet_hbond.range_1_label_asym_id' 48 4 'Structure model' '_pdbx_struct_sheet_hbond.range_2_label_asym_id' 49 4 'Structure model' '_refine.B_iso_max' 50 4 'Structure model' '_refine.B_iso_mean' 51 4 'Structure model' '_refine.B_iso_min' 52 4 'Structure model' '_refine.aniso_B[1][1]' 53 4 'Structure model' '_refine.aniso_B[1][2]' 54 4 'Structure model' '_refine.aniso_B[1][3]' 55 4 'Structure model' '_refine.aniso_B[2][2]' 56 4 'Structure model' '_refine.aniso_B[2][3]' 57 4 'Structure model' '_refine.aniso_B[3][3]' 58 4 'Structure model' '_refine.correlation_coeff_Fo_to_Fc' 59 4 'Structure model' '_refine.correlation_coeff_Fo_to_Fc_free' 60 4 'Structure model' '_refine.details' 61 4 'Structure model' '_refine.ls_R_factor_R_free' 62 4 'Structure model' '_refine.ls_R_factor_R_work' 63 4 'Structure model' '_refine.ls_R_factor_obs' 64 4 'Structure model' '_refine.ls_d_res_low' 65 4 'Structure model' '_refine.ls_number_reflns_R_free' 66 4 'Structure model' '_refine.ls_number_reflns_obs' 67 4 'Structure model' '_refine.ls_percent_reflns_R_free' 68 4 'Structure model' '_refine.ls_percent_reflns_obs' 69 4 'Structure model' '_refine.overall_SU_B' 70 4 'Structure model' '_refine.overall_SU_ML' 71 4 'Structure model' '_refine.pdbx_R_Free_selection_details' 72 4 'Structure model' '_refine.pdbx_diffrn_id' 73 4 'Structure model' '_refine.pdbx_ls_cross_valid_method' 74 4 'Structure model' '_refine.pdbx_ls_sigma_F' 75 4 'Structure model' '_refine.pdbx_overall_ESU_R_Free' 76 4 'Structure model' '_refine.pdbx_overall_phase_error' 77 4 'Structure model' '_refine.pdbx_solvent_ion_probe_radii' 78 4 'Structure model' '_refine.pdbx_solvent_shrinkage_radii' 79 4 'Structure model' '_refine.pdbx_solvent_vdw_probe_radii' 80 4 'Structure model' '_refine.pdbx_stereochemistry_target_values' 81 4 'Structure model' '_refine.solvent_model_details' 82 4 'Structure model' '_refine_hist.cycle_id' 83 4 'Structure model' '_refine_hist.d_res_low' 84 4 'Structure model' '_refine_hist.number_atoms_solvent' 85 4 'Structure model' '_refine_hist.number_atoms_total' 86 4 'Structure model' '_refine_hist.pdbx_B_iso_mean_ligand' 87 4 'Structure model' '_refine_hist.pdbx_B_iso_mean_solvent' 88 4 'Structure model' '_refine_hist.pdbx_number_atoms_ligand' 89 4 'Structure model' '_refine_hist.pdbx_number_atoms_protein' 90 4 'Structure model' '_refine_hist.pdbx_number_residues_total' 91 4 'Structure model' '_struct_conn_type.id' 92 4 'Structure model' '_struct_ref.db_code' 93 4 'Structure model' '_struct_ref.db_name' 94 4 'Structure model' '_struct_ref.pdbx_align_begin' 95 4 'Structure model' '_struct_ref.pdbx_db_accession' 96 4 'Structure model' '_struct_ref.pdbx_db_isoform' 97 4 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 98 4 'Structure model' '_struct_ref_seq.db_align_beg' 99 4 'Structure model' '_struct_ref_seq.db_align_end' 100 4 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_beg' 101 4 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_end' 102 4 'Structure model' '_struct_ref_seq.pdbx_db_accession' 103 4 'Structure model' '_struct_ref_seq.pdbx_strand_id' 104 4 'Structure model' '_struct_ref_seq.seq_align_beg' 105 4 'Structure model' '_struct_ref_seq.seq_align_end' 106 4 'Structure model' '_struct_sheet_range.beg_label_asym_id' 107 4 'Structure model' '_struct_sheet_range.end_label_asym_id' 108 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -11.8530 9.0830 -36.3050 0.0900 ? 0.0383 ? 0.0128 ? 0.1367 ? 0.0088 ? 0.1206 ? 3.8709 ? 2.1454 ? 0.5453 ? 9.6264 ? 0.6360 ? 3.3727 ? -0.0880 ? 0.1232 ? -0.2499 ? -0.1058 ? 0.1576 ? 0.1350 ? 0.2129 ? -0.0199 ? -0.0697 ? 2 'X-RAY DIFFRACTION' ? refined -0.9380 5.1270 -23.6190 0.0574 ? -0.0079 ? -0.0153 ? 0.0486 ? 0.0314 ? 0.0727 ? 4.6974 ? -0.4113 ? -1.8668 ? 3.6227 ? 0.4177 ? 5.9161 ? -0.1379 ? -0.0406 ? -0.1448 ? 0.1834 ? 0.0984 ? -0.1632 ? 0.3214 ? 0.2761 ? 0.0395 ? 3 'X-RAY DIFFRACTION' ? refined -6.2820 6.9230 -20.0900 0.0698 ? -0.0625 ? -0.0100 ? 0.1261 ? 0.0568 ? 0.0749 ? 3.6273 ? -3.3342 ? -2.2007 ? 6.6411 ? 3.2804 ? 6.8038 ? -0.1341 ? -0.1459 ? -0.0929 ? 0.4078 ? 0.0062 ? 0.1166 ? 0.0768 ? -0.1174 ? 0.1279 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 301 ? ? ? A 319 ? ? ? 2 'X-RAY DIFFRACTION' 2 ? ? B 57 ? ? ? B 143 ? ? ? 3 'X-RAY DIFFRACTION' 3 ? ? C 36 ? ? ? C 119 ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 ? refinement ? ? ? ? ? ? ? ? ? ? ? PDB-REDO ? ? ? . 5 # _pdbx_entry_details.entry_id 6QMQ _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR B 75 ? ? -31.93 -36.97 2 1 LYS B 109 ? ? 29.71 49.66 3 1 LYS C 59 ? ? -109.89 -68.95 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 320 ? A LEU 20 2 1 Y 1 A NH2 321 ? A NH2 21 3 1 Y 1 B GLY 49 ? B GLY 1 4 1 Y 1 B PRO 50 ? B PRO 2 5 1 Y 1 B SER 51 ? B SER 3 6 1 Y 1 B PHE 52 ? B PHE 4 7 1 Y 1 B ARG 53 ? B ARG 5 8 1 Y 1 B GLU 54 ? B GLU 6 9 1 Y 1 B GLN 55 ? B GLN 7 10 1 Y 1 B ASP 56 ? B ASP 8 11 1 Y 1 C GLY 25 ? C GLY 1 12 1 Y 1 C PRO 26 ? C PRO 2 13 1 Y 1 C MET 27 ? C MET 3 14 1 Y 1 C GLU 28 ? C GLU 4 15 1 Y 1 C GLU 29 ? C GLU 5 16 1 Y 1 C ILE 30 ? C ILE 6 17 1 Y 1 C ARG 31 ? C ARG 7 18 1 Y 1 C ASN 32 ? C ASN 8 19 1 Y 1 C LEU 33 ? C LEU 9 20 1 Y 1 C THR 34 ? C THR 10 21 1 Y 1 C VAL 35 ? C VAL 11 22 1 Y 1 C ARG 120 ? C ARG 96 # _pdbx_audit_support.funding_organization 'European Research Council (ERC)' _pdbx_audit_support.country 'European Union' _pdbx_audit_support.grant_number 678623 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SODIUM ION' NA 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'assay for oligomerization' _pdbx_struct_assembly_auth_evidence.details 'Fluorescence polarization assay' #