HEADER TRANSCRIPTION 08-FEB-19 6QMQ TITLE NF-YB/C HETERODIMER IN COMPLEX WITH NF-YA-DERIVED PEPTIDE STABILIZED TITLE 2 WITH C8-HYDROCARBON LINKER COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAAT BOX DNA-BINDING PROTEIN SUBUNIT A,NUCLEAR TRANSCRIPTION COMPND 5 FACTOR Y SUBUNIT A,NF-YA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: CAAT BOX DNA-BINDING PROTEIN SUBUNIT B,NUCLEAR TRANSCRIPTION COMPND 11 FACTOR Y SUBUNIT B,NF-YB; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: CAAT BOX DNA-BINDING PROTEIN SUBUNIT C,NUCLEAR TRANSCRIPTION COMPND 17 FACTOR Y SUBUNIT C,NF-YC,TRANSACTIVATOR HSM-1/2; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: NFYB, HAP3; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: NFYC; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS STAPLED PEPTIDE HISTONE FOLD TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.KIEHSTALLER,S.JEGANATHAN,N.M.PEARCE,M.WENDT,T.N.GROSSMANN,S.HENNIG REVDAT 6 24-JAN-24 6QMQ 1 LINK REVDAT 5 13-JUL-22 6QMQ 1 SEQRES REVDAT 4 18-MAY-22 6QMQ 1 COMPND SOURCE AUTHOR REMARK REVDAT 4 2 1 DBREF SEQADV SEQRES HET REVDAT 4 3 1 HETNAM HETSYN FORMUL HELIX REVDAT 4 4 1 SHEET LINK SITE SCALE REVDAT 4 5 1 ATOM REVDAT 3 27-NOV-19 6QMQ 1 JRNL REVDAT 2 30-OCT-19 6QMQ 1 JRNL REVDAT 1 02-OCT-19 6QMQ 0 JRNL AUTH S.JEGANATHAN,M.WENDT,S.KIEHSTALLER,D.BRANCACCIO,A.KUEPPER, JRNL AUTH 2 N.POSPIECH,A.CAROTENUTO,E.NOVELLINO,S.HENNIG,T.N.GROSSMANN JRNL TITL CONSTRAINED PEPTIDES WITH FINE-TUNED FLEXIBILITY INHIBIT JRNL TITL 2 NF-Y TRANSCRIPTION FACTOR ASSEMBLY. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 58 17351 2019 JRNL REFN ESSN 1521-3773 JRNL PMID 31539186 JRNL DOI 10.1002/ANIE.201907901 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 5661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 635 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 402 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1546 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.328 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.266 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.001 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1573 ; 0.014 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 1591 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2104 ; 1.627 ; 1.889 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3657 ; 1.145 ; 2.717 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 182 ; 5.601 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;35.790 ;21.307 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 312 ;18.572 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.199 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 238 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1724 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 364 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 319 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8530 9.0830 -36.3050 REMARK 3 T TENSOR REMARK 3 T11: 0.0900 T22: 0.1367 REMARK 3 T33: 0.1206 T12: 0.0383 REMARK 3 T13: 0.0128 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 3.8709 L22: 9.6264 REMARK 3 L33: 3.3727 L12: 2.1454 REMARK 3 L13: 0.5453 L23: 0.6360 REMARK 3 S TENSOR REMARK 3 S11: -0.0880 S12: 0.1232 S13: -0.2499 REMARK 3 S21: -0.1058 S22: 0.1576 S23: 0.1350 REMARK 3 S31: 0.2129 S32: -0.0199 S33: -0.0697 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 57 B 143 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9380 5.1270 -23.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.0574 T22: 0.0486 REMARK 3 T33: 0.0727 T12: -0.0079 REMARK 3 T13: -0.0153 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 4.6974 L22: 3.6227 REMARK 3 L33: 5.9161 L12: -0.4113 REMARK 3 L13: -1.8668 L23: 0.4177 REMARK 3 S TENSOR REMARK 3 S11: -0.1379 S12: -0.0406 S13: -0.1448 REMARK 3 S21: 0.1834 S22: 0.0984 S23: -0.1632 REMARK 3 S31: 0.3214 S32: 0.2761 S33: 0.0395 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 36 C 119 REMARK 3 ORIGIN FOR THE GROUP (A): -6.2820 6.9230 -20.0900 REMARK 3 T TENSOR REMARK 3 T11: 0.0698 T22: 0.1261 REMARK 3 T33: 0.0749 T12: -0.0625 REMARK 3 T13: -0.0100 T23: 0.0568 REMARK 3 L TENSOR REMARK 3 L11: 3.6273 L22: 6.6411 REMARK 3 L33: 6.8038 L12: -3.3342 REMARK 3 L13: -2.2007 L23: 3.2804 REMARK 3 S TENSOR REMARK 3 S11: -0.1341 S12: -0.1459 S13: -0.0929 REMARK 3 S21: 0.4078 S22: 0.0062 S23: 0.1166 REMARK 3 S31: 0.0768 S32: -0.1174 S33: 0.1279 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6QMQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6325 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CSR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE PH6.5 0.2 M REMARK 280 CALCIUM ACETATE 37% PEG600, VAPOR DIFFUSION, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.50500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.49500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.49500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.50500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 320 REMARK 465 NH2 A 321 REMARK 465 GLY B 49 REMARK 465 PRO B 50 REMARK 465 SER B 51 REMARK 465 PHE B 52 REMARK 465 ARG B 53 REMARK 465 GLU B 54 REMARK 465 GLN B 55 REMARK 465 ASP B 56 REMARK 465 GLY C 25 REMARK 465 PRO C 26 REMARK 465 MET C 27 REMARK 465 GLU C 28 REMARK 465 GLU C 29 REMARK 465 ILE C 30 REMARK 465 ARG C 31 REMARK 465 ASN C 32 REMARK 465 LEU C 33 REMARK 465 THR C 34 REMARK 465 VAL C 35 REMARK 465 ARG C 120 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 75 -36.97 -31.93 REMARK 500 LYS B 109 49.66 29.71 REMARK 500 LYS C 59 -68.95 -109.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACE A 301 O REMARK 620 2 GLU B 108 OE1 87.1 REMARK 620 3 GLU B 108 OE2 83.8 3.3 REMARK 620 4 ASP C 109 OD1 80.6 75.8 75.2 REMARK 620 5 ASP C 112 OD1 144.0 59.1 62.3 100.6 REMARK 620 6 ASP C 112 OD2 87.4 18.0 18.5 93.6 56.7 REMARK 620 N 1 2 3 4 5 DBREF 6QMQ A 302 320 UNP P23511 NFYA_HUMAN 267 285 DBREF 6QMQ B 51 143 UNP P25208 NFYB_HUMAN 51 143 DBREF 6QMQ C 27 120 UNP Q13952 NFYC_HUMAN 27 120 SEQADV 6QMQ ACE A 301 UNP P23511 ACETYLATION SEQADV 6QMQ IC0 A 307 UNP P23511 TYR 272 ENGINEERED MUTATION SEQADV 6QMQ MH8 A 311 UNP P23511 LEU 276 ENGINEERED MUTATION SEQADV 6QMQ NH2 A 321 UNP P23511 AMIDATION SEQADV 6QMQ GLY B 49 UNP P25208 EXPRESSION TAG SEQADV 6QMQ PRO B 50 UNP P25208 EXPRESSION TAG SEQADV 6QMQ GLY C 25 UNP Q13952 EXPRESSION TAG SEQADV 6QMQ PRO C 26 UNP Q13952 EXPRESSION TAG SEQRES 1 A 21 ACE VAL ASN ALA LYS GLN IC0 HIS ARG ILE MH8 LYS ARG SEQRES 2 A 21 ARG GLN ALA ARG ALA LYS LEU NH2 SEQRES 1 B 95 GLY PRO SER PHE ARG GLU GLN ASP ILE TYR LEU PRO ILE SEQRES 2 B 95 ALA ASN VAL ALA ARG ILE MET LYS ASN ALA ILE PRO GLN SEQRES 3 B 95 THR GLY LYS ILE ALA LYS ASP ALA LYS GLU CYS VAL GLN SEQRES 4 B 95 GLU CYS VAL SER GLU PHE ILE SER PHE ILE THR SER GLU SEQRES 5 B 95 ALA SER GLU ARG CYS HIS GLN GLU LYS ARG LYS THR ILE SEQRES 6 B 95 ASN GLY GLU ASP ILE LEU PHE ALA MET SER THR LEU GLY SEQRES 7 B 95 PHE ASP SER TYR VAL GLU PRO LEU LYS LEU TYR LEU GLN SEQRES 8 B 95 LYS PHE ARG GLU SEQRES 1 C 96 GLY PRO MET GLU GLU ILE ARG ASN LEU THR VAL LYS ASP SEQRES 2 C 96 PHE ARG VAL GLN GLU LEU PRO LEU ALA ARG ILE LYS LYS SEQRES 3 C 96 ILE MET LYS LEU ASP GLU ASP VAL LYS MET ILE SER ALA SEQRES 4 C 96 GLU ALA PRO VAL LEU PHE ALA LYS ALA ALA GLN ILE PHE SEQRES 5 C 96 ILE THR GLU LEU THR LEU ARG ALA TRP ILE HIS THR GLU SEQRES 6 C 96 ASP ASN LYS ARG ARG THR LEU GLN ARG ASN ASP ILE ALA SEQRES 7 C 96 MET ALA ILE THR LYS PHE ASP GLN PHE ASP PHE LEU ILE SEQRES 8 C 96 ASP ILE VAL PRO ARG HET ACE A 301 3 HET IC0 A 307 9 HET MH8 A 311 8 HET NA C 201 1 HETNAM ACE ACETYL GROUP HETNAM IC0 FMOC-(S)-2-(4-PENTENYL)-GLYCINE HETNAM MH8 (2S)-2-AMINO-2-METHYLHEPT-6-ENOIC ACID HETNAM NA SODIUM ION HETSYN IC0 (2S)-2-AZANYLHEPT-6-ENOIC ACID FORMUL 1 ACE C2 H4 O FORMUL 1 IC0 C7 H13 N O2 FORMUL 1 MH8 C8 H15 N O2 FORMUL 4 NA NA 1+ FORMUL 5 HOH *7(H2 O) HELIX 1 AA1 ASN A 303 LYS A 319 1 17 HELIX 2 AA2 PRO B 60 ILE B 72 1 13 HELIX 3 AA3 ALA B 79 GLU B 108 1 30 HELIX 4 AA4 ASN B 114 LEU B 125 1 12 HELIX 5 AA5 PHE B 127 SER B 129 5 3 HELIX 6 AA6 TYR B 130 GLU B 143 1 14 HELIX 7 AA7 ASP C 37 GLU C 42 1 6 HELIX 8 AA8 PRO C 44 LYS C 53 1 10 HELIX 9 AA9 ALA C 63 ASN C 91 1 29 HELIX 10 AB1 GLN C 97 PHE C 108 1 12 HELIX 11 AB2 ASP C 109 ILE C 115 5 7 SHEET 1 AA1 2 LYS B 77 ILE B 78 0 SHEET 2 AA1 2 THR C 95 LEU C 96 1 O LEU C 96 N LYS B 77 SHEET 1 AA2 2 THR B 112 ILE B 113 0 SHEET 2 AA2 2 MET C 60 ILE C 61 1 O MET C 60 N ILE B 113 LINK C ACE A 301 N VAL A 302 1555 1555 1.34 LINK C GLN A 306 N IC0 A 307 1555 1555 1.34 LINK C IC0 A 307 N HIS A 308 1555 1555 1.34 LINK C7 IC0 A 307 CD MH8 A 311 1555 1555 1.48 LINK C ILE A 310 N MH8 A 311 1555 1555 1.34 LINK C MH8 A 311 N LYS A 312 1555 1555 1.34 LINK O ACE A 301 NA NA C 201 1555 1555 2.31 LINK OE1 GLU B 108 NA NA C 201 1555 4554 2.40 LINK OE2 GLU B 108 NA NA C 201 1555 4554 2.39 LINK OD1 ASP C 109 NA NA C 201 1555 1555 2.28 LINK OD1 ASP C 112 NA NA C 201 1555 1555 2.32 LINK OD2 ASP C 112 NA NA C 201 1555 1555 2.29 CRYST1 45.010 52.210 72.990 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022217 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013701 0.00000 HETATM 1 C ACE A 301 -14.519 20.836 -31.737 1.00 68.51 C HETATM 2 O ACE A 301 -13.837 20.558 -30.785 1.00 75.56 O HETATM 3 CH3 ACE A 301 -15.560 21.952 -31.658 1.00 61.14 C