HEADER HYDROLASE 12-FEB-19 6QNZ TITLE CRYSTAL STRUCTURE OF THE SITE-SPECIFIC DNA NICKASE N.BSPD6I E418A TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETERODIMERIC RESTRICTION ENDONUCLEASE R.BSPD6I LARGE COMPND 3 SUBUNIT; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP. D6; SOURCE 3 ORGANISM_TAXID: 127889; SOURCE 4 GENE: BSPD6R1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: NOVABLUE(DE3) KEYWDS NICKASE, ENDONUCLEASE, NT.BSPD6I, NICKING, DNA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.I.ARTYUKH,G.S.KACHALOVA,A.K.YUNUSOVA,A.G.GABDULKHAKOV, AUTHOR 2 B.F.FATKHULLIN,B.P.ATANASOV,T.A.PEREVYAZOVA,A.N.POPOV,L.A.ZHELEZNAYA REVDAT 4 24-JAN-24 6QNZ 1 REMARK REVDAT 3 20-MAY-20 6QNZ 1 JRNL REVDAT 2 29-APR-20 6QNZ 1 JRNL REVDAT 1 04-MAR-20 6QNZ 0 JRNL AUTH R.I.ARTYUKH,G.S.KACHALOVA,A.K.YUNUSOVA,B.F.FATKHULLIN, JRNL AUTH 2 B.P.ATANASOV,T.A.PEREVYAZOVA,A.N.POPOV,A.G.GABDULKHAKOV, JRNL AUTH 3 L.A.ZHELEZNAYA JRNL TITL THE KEY ROLE OF E418 CARBOXYL GROUP IN THE FORMATION OF JRNL TITL 2 NT.BSPD6I NICKASE ACTIVE SITE: STRUCTURAL AND FUNCTIONAL JRNL TITL 3 PROPERTIES OF NT.BSPD6I E418A MUTANT. JRNL REF J.STRUCT.BIOL. V. 210 07508 2020 JRNL REFN ESSN 1095-8657 JRNL PMID 32298813 JRNL DOI 10.1016/J.JSB.2020.107508 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 49261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1232 - 6.4157 0.79 2422 127 0.1784 0.1853 REMARK 3 2 6.4157 - 5.0943 0.83 2472 130 0.2202 0.2258 REMARK 3 3 5.0943 - 4.4509 0.83 2490 131 0.1891 0.2039 REMARK 3 4 4.4509 - 4.0442 0.86 2544 134 0.1997 0.2321 REMARK 3 5 4.0442 - 3.7545 0.87 2586 135 0.2209 0.2041 REMARK 3 6 3.7545 - 3.5332 0.86 2552 135 0.2314 0.1909 REMARK 3 7 3.5332 - 3.3563 0.86 2556 135 0.2446 0.3000 REMARK 3 8 3.3563 - 3.2102 0.89 2638 138 0.2767 0.2769 REMARK 3 9 3.2102 - 3.0867 0.90 2639 138 0.2648 0.2823 REMARK 3 10 3.0867 - 2.9802 0.89 2622 137 0.2787 0.3410 REMARK 3 11 2.9802 - 2.8870 0.90 2649 140 0.2722 0.2624 REMARK 3 12 2.8870 - 2.8045 0.90 2679 139 0.2799 0.3019 REMARK 3 13 2.8045 - 2.7307 0.89 2590 136 0.2774 0.3484 REMARK 3 14 2.7307 - 2.6640 0.89 2624 138 0.3045 0.3329 REMARK 3 15 2.6640 - 2.6035 0.90 2672 141 0.3038 0.3613 REMARK 3 16 2.6035 - 2.5481 0.91 2616 138 0.3063 0.3300 REMARK 3 17 2.5481 - 2.4971 0.92 2736 144 0.3145 0.3291 REMARK 3 18 2.4971 - 2.4500 0.92 2715 143 0.3279 0.3167 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 9686 REMARK 3 ANGLE : 0.631 13041 REMARK 3 CHIRALITY : 0.043 1416 REMARK 3 PLANARITY : 0.004 1665 REMARK 3 DIHEDRAL : 17.761 3725 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QNZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49355 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 47.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2EWF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04 M KH2PO4, 16% (W/V) PEG 8000, 20% REMARK 280 GLYCEROL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.12500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 55 REMARK 465 PHE A 56 REMARK 465 LEU A 57 REMARK 465 GLY A 58 REMARK 465 THR A 59 REMARK 465 THR A 60 REMARK 465 TYR A 61 REMARK 465 LYS A 62 REMARK 465 LYS A 63 REMARK 465 GLU A 64 REMARK 465 ALA A 65 REMARK 465 ALA A 66 REMARK 465 PHE A 67 REMARK 465 ASN A 210 REMARK 465 VAL A 211 REMARK 465 GLY A 212 REMARK 465 LYS A 213 REMARK 465 ILE A 214 REMARK 465 ARG A 215 REMARK 465 GLU A 216 REMARK 465 GLY A 217 REMARK 465 LYS A 218 REMARK 465 SER A 219 REMARK 465 ASP A 220 REMARK 465 SER A 221 REMARK 465 VAL A 602 REMARK 465 ARG A 603 REMARK 465 PHE A 604 REMARK 465 MET B 1 REMARK 465 LEU B 53 REMARK 465 PRO B 54 REMARK 465 GLN B 55 REMARK 465 PHE B 56 REMARK 465 LEU B 57 REMARK 465 GLY B 58 REMARK 465 THR B 59 REMARK 465 THR B 60 REMARK 465 TYR B 61 REMARK 465 LYS B 62 REMARK 465 LYS B 63 REMARK 465 GLU B 64 REMARK 465 ALA B 65 REMARK 465 ALA B 66 REMARK 465 PHE B 67 REMARK 465 TYR B 208 REMARK 465 GLY B 209 REMARK 465 ASN B 210 REMARK 465 VAL B 211 REMARK 465 GLY B 212 REMARK 465 LYS B 213 REMARK 465 ILE B 214 REMARK 465 ARG B 215 REMARK 465 GLU B 216 REMARK 465 GLY B 217 REMARK 465 LYS B 218 REMARK 465 SER B 219 REMARK 465 ASP B 220 REMARK 465 SER B 221 REMARK 465 SER B 222 REMARK 465 HIS B 223 REMARK 465 LYS B 224 REMARK 465 SER B 225 REMARK 465 VAL B 602 REMARK 465 ARG B 603 REMARK 465 PHE B 604 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 134 80.74 -164.57 REMARK 500 GLU A 302 36.74 -85.40 REMARK 500 ASN A 430 3.56 81.77 REMARK 500 VAL A 447 -65.81 -125.37 REMARK 500 ARG A 580 65.92 -69.31 REMARK 500 SER B 134 80.30 -160.58 REMARK 500 GLN B 168 10.61 -69.67 REMARK 500 ASN B 280 56.41 -96.61 REMARK 500 VAL B 447 -68.67 -122.44 REMARK 500 GLU B 503 64.02 -118.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 703 DBREF 6QNZ A 1 604 UNP A3FEV7 A3FEV7_9BACI 1 604 DBREF 6QNZ B 1 604 UNP A3FEV7 A3FEV7_9BACI 1 604 SEQADV 6QNZ ALA A 418 UNP A3FEV7 GLU 418 ENGINEERED MUTATION SEQADV 6QNZ ALA B 418 UNP A3FEV7 GLU 418 ENGINEERED MUTATION SEQRES 1 A 604 MET ALA LYS LYS VAL ASN TRP TYR VAL SER CYS SER PRO SEQRES 2 A 604 ARG SER PRO GLU LYS ILE GLN PRO GLU LEU LYS VAL LEU SEQRES 3 A 604 ALA ASN PHE GLU GLY SER TYR TRP LYS GLY VAL LYS GLY SEQRES 4 A 604 TYR LYS ALA GLN GLU ALA PHE ALA LYS GLU LEU ALA ALA SEQRES 5 A 604 LEU PRO GLN PHE LEU GLY THR THR TYR LYS LYS GLU ALA SEQRES 6 A 604 ALA PHE SER THR ARG ASP ARG VAL ALA PRO MET LYS THR SEQRES 7 A 604 TYR GLY PHE VAL PHE VAL ASP GLU GLU GLY TYR LEU ARG SEQRES 8 A 604 ILE THR GLU ALA GLY LYS MET LEU ALA ASN ASN ARG ARG SEQRES 9 A 604 PRO LYS ASP VAL PHE LEU LYS GLN LEU VAL LYS TRP GLN SEQRES 10 A 604 TYR PRO SER PHE GLN HIS LYS GLY LYS GLU TYR PRO GLU SEQRES 11 A 604 GLU GLU TRP SER ILE ASN PRO LEU VAL PHE VAL LEU SER SEQRES 12 A 604 LEU LEU LYS LYS VAL GLY GLY LEU SER LYS LEU ASP ILE SEQRES 13 A 604 ALA MET PHE CYS LEU THR ALA THR ASN ASN ASN GLN VAL SEQRES 14 A 604 ASP GLU ILE ALA GLU GLU ILE MET GLN PHE ARG ASN GLU SEQRES 15 A 604 ARG GLU LYS ILE LYS GLY GLN ASN LYS LYS LEU GLU PHE SEQRES 16 A 604 THR GLU ASN TYR PHE PHE LYS ARG PHE GLU LYS ILE TYR SEQRES 17 A 604 GLY ASN VAL GLY LYS ILE ARG GLU GLY LYS SER ASP SER SEQRES 18 A 604 SER HIS LYS SER LYS ILE GLU THR LYS MET ARG ASN ALA SEQRES 19 A 604 ARG ASP VAL ALA ASP ALA THR THR ARG TYR PHE ARG TYR SEQRES 20 A 604 THR GLY LEU PHE VAL ALA ARG GLY ASN GLN LEU VAL LEU SEQRES 21 A 604 ASN PRO GLU LYS SER ASP LEU ILE ASP GLU ILE ILE SER SEQRES 22 A 604 SER SER LYS VAL VAL LYS ASN TYR THR ARG VAL GLU GLU SEQRES 23 A 604 PHE HIS GLU TYR TYR GLY ASN PRO SER LEU PRO GLN PHE SEQRES 24 A 604 SER PHE GLU THR LYS GLU GLN LEU LEU ASP LEU ALA HIS SEQRES 25 A 604 ARG ILE ARG ASP GLU ASN THR ARG LEU ALA GLU GLN LEU SEQRES 26 A 604 VAL GLU HIS PHE PRO ASN VAL LYS VAL GLU ILE GLN VAL SEQRES 27 A 604 LEU GLU ASP ILE TYR ASN SER LEU ASN LYS LYS VAL ASP SEQRES 28 A 604 VAL GLU THR LEU LYS ASP VAL ILE TYR HIS ALA LYS GLU SEQRES 29 A 604 LEU GLN LEU GLU LEU LYS LYS LYS LYS LEU GLN ALA ASP SEQRES 30 A 604 PHE ASN ASP PRO ARG GLN LEU GLU GLU VAL ILE ASP LEU SEQRES 31 A 604 LEU GLU VAL TYR HIS GLU LYS LYS ASN VAL ILE GLU GLU SEQRES 32 A 604 LYS ILE LYS ALA ARG PHE ILE ALA ASN LYS ASN THR VAL SEQRES 33 A 604 PHE ALA TRP LEU THR TRP ASN GLY PHE ILE ILE LEU GLY SEQRES 34 A 604 ASN ALA LEU GLU TYR LYS ASN ASN PHE VAL ILE ASP GLU SEQRES 35 A 604 GLU LEU GLN PRO VAL THR HIS ALA ALA GLY ASN GLN PRO SEQRES 36 A 604 ASP MET GLU ILE ILE TYR GLU ASP PHE ILE VAL LEU GLY SEQRES 37 A 604 GLU VAL THR THR SER LYS GLY ALA THR GLN PHE LYS MET SEQRES 38 A 604 GLU SER GLU PRO VAL THR ARG HIS TYR LEU ASN LYS LYS SEQRES 39 A 604 LYS GLU LEU GLU LYS GLN GLY VAL GLU LYS GLU LEU TYR SEQRES 40 A 604 CYS LEU PHE ILE ALA PRO GLU ILE ASN LYS ASN THR PHE SEQRES 41 A 604 GLU GLU PHE MET LYS TYR ASN ILE VAL GLN ASN THR ARG SEQRES 42 A 604 ILE ILE PRO LEU SER LEU LYS GLN PHE ASN MET LEU LEU SEQRES 43 A 604 MET VAL GLN LYS LYS LEU ILE GLU LYS GLY ARG ARG LEU SEQRES 44 A 604 SER SER TYR ASP ILE LYS ASN LEU MET VAL SER LEU TYR SEQRES 45 A 604 ARG THR THR ILE GLU CYS GLU ARG LYS TYR THR GLN ILE SEQRES 46 A 604 LYS ALA GLY LEU GLU GLU THR LEU ASN ASN TRP VAL VAL SEQRES 47 A 604 ASP LYS GLU VAL ARG PHE SEQRES 1 B 604 MET ALA LYS LYS VAL ASN TRP TYR VAL SER CYS SER PRO SEQRES 2 B 604 ARG SER PRO GLU LYS ILE GLN PRO GLU LEU LYS VAL LEU SEQRES 3 B 604 ALA ASN PHE GLU GLY SER TYR TRP LYS GLY VAL LYS GLY SEQRES 4 B 604 TYR LYS ALA GLN GLU ALA PHE ALA LYS GLU LEU ALA ALA SEQRES 5 B 604 LEU PRO GLN PHE LEU GLY THR THR TYR LYS LYS GLU ALA SEQRES 6 B 604 ALA PHE SER THR ARG ASP ARG VAL ALA PRO MET LYS THR SEQRES 7 B 604 TYR GLY PHE VAL PHE VAL ASP GLU GLU GLY TYR LEU ARG SEQRES 8 B 604 ILE THR GLU ALA GLY LYS MET LEU ALA ASN ASN ARG ARG SEQRES 9 B 604 PRO LYS ASP VAL PHE LEU LYS GLN LEU VAL LYS TRP GLN SEQRES 10 B 604 TYR PRO SER PHE GLN HIS LYS GLY LYS GLU TYR PRO GLU SEQRES 11 B 604 GLU GLU TRP SER ILE ASN PRO LEU VAL PHE VAL LEU SER SEQRES 12 B 604 LEU LEU LYS LYS VAL GLY GLY LEU SER LYS LEU ASP ILE SEQRES 13 B 604 ALA MET PHE CYS LEU THR ALA THR ASN ASN ASN GLN VAL SEQRES 14 B 604 ASP GLU ILE ALA GLU GLU ILE MET GLN PHE ARG ASN GLU SEQRES 15 B 604 ARG GLU LYS ILE LYS GLY GLN ASN LYS LYS LEU GLU PHE SEQRES 16 B 604 THR GLU ASN TYR PHE PHE LYS ARG PHE GLU LYS ILE TYR SEQRES 17 B 604 GLY ASN VAL GLY LYS ILE ARG GLU GLY LYS SER ASP SER SEQRES 18 B 604 SER HIS LYS SER LYS ILE GLU THR LYS MET ARG ASN ALA SEQRES 19 B 604 ARG ASP VAL ALA ASP ALA THR THR ARG TYR PHE ARG TYR SEQRES 20 B 604 THR GLY LEU PHE VAL ALA ARG GLY ASN GLN LEU VAL LEU SEQRES 21 B 604 ASN PRO GLU LYS SER ASP LEU ILE ASP GLU ILE ILE SER SEQRES 22 B 604 SER SER LYS VAL VAL LYS ASN TYR THR ARG VAL GLU GLU SEQRES 23 B 604 PHE HIS GLU TYR TYR GLY ASN PRO SER LEU PRO GLN PHE SEQRES 24 B 604 SER PHE GLU THR LYS GLU GLN LEU LEU ASP LEU ALA HIS SEQRES 25 B 604 ARG ILE ARG ASP GLU ASN THR ARG LEU ALA GLU GLN LEU SEQRES 26 B 604 VAL GLU HIS PHE PRO ASN VAL LYS VAL GLU ILE GLN VAL SEQRES 27 B 604 LEU GLU ASP ILE TYR ASN SER LEU ASN LYS LYS VAL ASP SEQRES 28 B 604 VAL GLU THR LEU LYS ASP VAL ILE TYR HIS ALA LYS GLU SEQRES 29 B 604 LEU GLN LEU GLU LEU LYS LYS LYS LYS LEU GLN ALA ASP SEQRES 30 B 604 PHE ASN ASP PRO ARG GLN LEU GLU GLU VAL ILE ASP LEU SEQRES 31 B 604 LEU GLU VAL TYR HIS GLU LYS LYS ASN VAL ILE GLU GLU SEQRES 32 B 604 LYS ILE LYS ALA ARG PHE ILE ALA ASN LYS ASN THR VAL SEQRES 33 B 604 PHE ALA TRP LEU THR TRP ASN GLY PHE ILE ILE LEU GLY SEQRES 34 B 604 ASN ALA LEU GLU TYR LYS ASN ASN PHE VAL ILE ASP GLU SEQRES 35 B 604 GLU LEU GLN PRO VAL THR HIS ALA ALA GLY ASN GLN PRO SEQRES 36 B 604 ASP MET GLU ILE ILE TYR GLU ASP PHE ILE VAL LEU GLY SEQRES 37 B 604 GLU VAL THR THR SER LYS GLY ALA THR GLN PHE LYS MET SEQRES 38 B 604 GLU SER GLU PRO VAL THR ARG HIS TYR LEU ASN LYS LYS SEQRES 39 B 604 LYS GLU LEU GLU LYS GLN GLY VAL GLU LYS GLU LEU TYR SEQRES 40 B 604 CYS LEU PHE ILE ALA PRO GLU ILE ASN LYS ASN THR PHE SEQRES 41 B 604 GLU GLU PHE MET LYS TYR ASN ILE VAL GLN ASN THR ARG SEQRES 42 B 604 ILE ILE PRO LEU SER LEU LYS GLN PHE ASN MET LEU LEU SEQRES 43 B 604 MET VAL GLN LYS LYS LEU ILE GLU LYS GLY ARG ARG LEU SEQRES 44 B 604 SER SER TYR ASP ILE LYS ASN LEU MET VAL SER LEU TYR SEQRES 45 B 604 ARG THR THR ILE GLU CYS GLU ARG LYS TYR THR GLN ILE SEQRES 46 B 604 LYS ALA GLY LEU GLU GLU THR LEU ASN ASN TRP VAL VAL SEQRES 47 B 604 ASP LYS GLU VAL ARG PHE HET GOL A 701 6 HET GOL A 702 6 HET PO4 A 703 5 HET PO4 A 704 5 HET PO4 B 701 5 HET PO4 B 702 5 HET PO4 B 703 5 HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 PO4 5(O4 P 3-) FORMUL 10 HOH *9(H2 O) HELIX 1 AA1 SER A 15 GLU A 17 5 3 HELIX 2 AA2 LYS A 18 ASN A 28 1 11 HELIX 3 AA3 LYS A 35 ALA A 52 1 18 HELIX 4 AA4 THR A 69 TYR A 79 1 11 HELIX 5 AA5 THR A 93 ASN A 101 1 9 HELIX 6 AA6 ARG A 104 TRP A 116 1 13 HELIX 7 AA7 ASN A 136 GLY A 149 1 14 HELIX 8 AA8 LYS A 153 CYS A 160 1 8 HELIX 9 AA9 ASN A 165 ASN A 167 5 3 HELIX 10 AB1 GLN A 168 ILE A 186 1 19 HELIX 11 AB2 GLY A 188 GLY A 209 1 22 HELIX 12 AB3 HIS A 223 THR A 248 1 26 HELIX 13 AB4 LYS A 264 SER A 274 1 11 HELIX 14 AB5 ARG A 283 GLY A 292 1 10 HELIX 15 AB6 THR A 303 VAL A 326 1 24 HELIX 16 AB7 PHE A 329 ASN A 331 5 3 HELIX 17 AB8 VAL A 332 ASN A 344 1 13 HELIX 18 AB9 ASP A 351 PHE A 378 1 28 HELIX 19 AC1 ASP A 380 VAL A 393 1 14 HELIX 20 AC2 TYR A 394 GLU A 396 5 3 HELIX 21 AC3 LYS A 397 ALA A 407 1 11 HELIX 22 AC4 ASN A 412 GLY A 429 1 18 HELIX 23 AC5 LYS A 474 GLY A 501 1 28 HELIX 24 AC6 ASN A 516 GLN A 530 1 15 HELIX 25 AC7 LEU A 539 LYS A 555 1 17 HELIX 26 AC8 SER A 560 CYS A 578 1 19 HELIX 27 AC9 LYS A 581 GLU A 601 1 21 HELIX 28 AD1 SER B 15 GLU B 17 5 3 HELIX 29 AD2 LYS B 18 ALA B 27 1 10 HELIX 30 AD3 ASN B 28 GLU B 30 5 3 HELIX 31 AD4 GLY B 39 ALA B 52 1 14 HELIX 32 AD5 THR B 69 TYR B 79 1 11 HELIX 33 AD6 THR B 93 ASN B 101 1 9 HELIX 34 AD7 ARG B 104 TRP B 116 1 13 HELIX 35 AD8 ASN B 136 GLY B 149 1 14 HELIX 36 AD9 LYS B 153 CYS B 160 1 8 HELIX 37 AE1 ASN B 165 ASN B 167 5 3 HELIX 38 AE2 GLN B 168 ILE B 186 1 19 HELIX 39 AE3 GLY B 188 ILE B 207 1 20 HELIX 40 AE4 ILE B 227 THR B 248 1 22 HELIX 41 AE5 LYS B 264 SER B 275 1 12 HELIX 42 AE6 ARG B 283 GLY B 292 1 10 HELIX 43 AE7 THR B 303 GLU B 327 1 25 HELIX 44 AE8 PHE B 329 ASN B 331 5 3 HELIX 45 AE9 VAL B 332 ASN B 344 1 13 HELIX 46 AF1 SER B 345 LYS B 348 5 4 HELIX 47 AF2 ASP B 351 PHE B 378 1 28 HELIX 48 AF3 ASP B 380 VAL B 393 1 14 HELIX 49 AF4 TYR B 394 GLU B 396 5 3 HELIX 50 AF5 LYS B 397 PHE B 409 1 13 HELIX 51 AF6 ASN B 412 GLY B 429 1 18 HELIX 52 AF7 LYS B 474 GLY B 501 1 28 HELIX 53 AF8 ASN B 516 ASN B 531 1 16 HELIX 54 AF9 LEU B 539 GLY B 556 1 18 HELIX 55 AG1 SER B 560 CYS B 578 1 19 HELIX 56 AG2 LYS B 581 LYS B 600 1 20 SHEET 1 AA1 2 VAL A 82 VAL A 84 0 SHEET 2 AA1 2 LEU A 90 ILE A 92 -1 O ARG A 91 N PHE A 83 SHEET 1 AA2 3 LEU A 151 SER A 152 0 SHEET 2 AA2 3 GLN A 257 LEU A 260 -1 O LEU A 258 N LEU A 151 SHEET 3 AA2 3 PHE A 251 ARG A 254 -1 N VAL A 252 O VAL A 259 SHEET 1 AA3 5 GLU A 433 ASN A 436 0 SHEET 2 AA3 5 MET A 457 ILE A 460 -1 O GLU A 458 N LYS A 435 SHEET 3 AA3 5 PHE A 464 VAL A 470 -1 O GLY A 468 N MET A 457 SHEET 4 AA3 5 GLU A 505 ALA A 512 1 O TYR A 507 N LEU A 467 SHEET 5 AA3 5 ILE A 534 SER A 538 1 O ILE A 535 N CYS A 508 SHEET 1 AA4 2 VAL A 439 ILE A 440 0 SHEET 2 AA4 2 PRO A 446 THR A 448 -1 O VAL A 447 N VAL A 439 SHEET 1 AA5 2 VAL B 82 VAL B 84 0 SHEET 2 AA5 2 LEU B 90 ILE B 92 -1 O ARG B 91 N PHE B 83 SHEET 1 AA6 3 LEU B 151 SER B 152 0 SHEET 2 AA6 3 GLN B 257 LEU B 260 -1 O LEU B 258 N LEU B 151 SHEET 3 AA6 3 PHE B 251 ARG B 254 -1 N ARG B 254 O GLN B 257 SHEET 1 AA7 5 GLU B 433 ASN B 436 0 SHEET 2 AA7 5 MET B 457 ILE B 460 -1 O GLU B 458 N LYS B 435 SHEET 3 AA7 5 PHE B 464 VAL B 470 -1 O VAL B 466 N ILE B 459 SHEET 4 AA7 5 GLU B 505 ALA B 512 1 O TYR B 507 N LEU B 467 SHEET 5 AA7 5 ILE B 534 SER B 538 1 O ILE B 535 N CYS B 508 CISPEP 1 SER A 12 PRO A 13 0 0.53 CISPEP 2 TYR A 118 PRO A 119 0 0.69 CISPEP 3 LEU A 296 PRO A 297 0 -5.59 CISPEP 4 SER B 12 PRO B 13 0 -3.61 CISPEP 5 TYR B 118 PRO B 119 0 -0.25 CISPEP 6 LEU B 296 PRO B 297 0 -5.62 SITE 1 AC1 6 LYS A 106 LYS A 371 ASN A 436 PHE A 438 SITE 2 AC1 6 VAL A 439 ILE A 440 SITE 1 AC2 3 GLU A 263 LYS A 264 LYS A 363 SITE 1 AC3 5 ARG A 243 ASN A 412 THR A 415 THR A 448 SITE 2 AC3 5 HIS A 449 SITE 1 AC4 5 MET A 98 ARG A 104 LYS A 111 PRO A 294 SITE 2 AC4 5 LYS A 356 SITE 1 AC5 5 ARG B 104 ASP B 107 LYS B 111 PRO B 294 SITE 2 AC5 5 LYS B 356 SITE 1 AC6 4 ASP B 107 LEU B 110 LEU B 267 GLU B 302 SITE 1 AC7 4 ARG B 243 THR B 415 THR B 448 HIS B 449 CRYST1 76.430 92.250 113.800 90.00 105.61 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013084 0.000000 0.003656 0.00000 SCALE2 0.000000 0.010840 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009124 0.00000 TER 4775 GLU A 601 TER 9471 GLU B 601 HETATM 9472 C1 GOL A 701 -27.350 -14.569 -8.240 0.73 49.97 C HETATM 9473 O1 GOL A 701 -28.232 -14.705 -7.135 0.73 52.66 O HETATM 9474 C2 GOL A 701 -25.958 -15.089 -7.918 0.73 51.04 C HETATM 9475 O2 GOL A 701 -25.039 -14.016 -7.786 0.73 60.87 O HETATM 9476 C3 GOL A 701 -25.464 -16.005 -9.013 0.73 38.38 C HETATM 9477 O3 GOL A 701 -25.507 -17.322 -8.487 0.73 59.77 O HETATM 9478 C1 GOL A 702 -21.942 -0.936 -4.113 1.00 82.95 C HETATM 9479 O1 GOL A 702 -22.761 0.241 -4.153 1.00 88.17 O HETATM 9480 C2 GOL A 702 -21.120 -0.999 -2.834 1.00 84.26 C HETATM 9481 O2 GOL A 702 -20.769 -2.329 -2.458 1.00 90.74 O HETATM 9482 C3 GOL A 702 -19.842 -0.226 -3.048 1.00 80.37 C HETATM 9483 O3 GOL A 702 -18.853 -0.827 -2.227 1.00 85.29 O HETATM 9484 P PO4 A 703 -20.211 -22.946 -18.450 0.81 54.90 P HETATM 9485 O1 PO4 A 703 -18.955 -23.034 -19.248 0.81 55.18 O HETATM 9486 O2 PO4 A 703 -20.894 -21.661 -18.794 0.81 53.48 O HETATM 9487 O3 PO4 A 703 -21.113 -24.081 -18.808 0.81 60.25 O1- HETATM 9488 O4 PO4 A 703 -19.883 -22.976 -16.991 0.81 52.68 O HETATM 9489 P PO4 A 704 -13.651 -7.729 4.293 0.63 72.59 P HETATM 9490 O1 PO4 A 704 -13.715 -6.818 3.118 0.63 59.63 O HETATM 9491 O2 PO4 A 704 -12.829 -7.062 5.364 0.63 57.72 O HETATM 9492 O3 PO4 A 704 -13.020 -9.023 3.891 0.63 64.55 O1- HETATM 9493 O4 PO4 A 704 -15.050 -8.027 4.752 0.63 62.15 O HETATM 9494 P PO4 B 701 -36.394 -8.416 -50.515 0.79 65.81 P HETATM 9495 O1 PO4 B 701 -35.633 -9.452 -51.288 0.79 64.24 O1- HETATM 9496 O2 PO4 B 701 -35.609 -7.138 -50.436 0.79 54.18 O HETATM 9497 O3 PO4 B 701 -36.640 -8.938 -49.130 0.79 55.16 O HETATM 9498 O4 PO4 B 701 -37.702 -8.159 -51.203 0.79 60.33 O HETATM 9499 P PO4 B 702 -38.151 -4.971 -55.025 0.63 76.58 P HETATM 9500 O1 PO4 B 702 -38.512 -4.009 -56.123 0.63 60.00 O HETATM 9501 O2 PO4 B 702 -37.416 -4.260 -53.925 0.63 63.27 O HETATM 9502 O3 PO4 B 702 -37.276 -6.069 -55.564 0.63 55.81 O1- HETATM 9503 O4 PO4 B 702 -39.422 -5.552 -54.472 0.63 61.89 O HETATM 9504 P PO4 B 703 -42.507 -24.608 -72.841 0.67 78.11 P HETATM 9505 O1 PO4 B 703 -41.319 -25.144 -73.570 0.67 66.78 O HETATM 9506 O2 PO4 B 703 -42.245 -24.705 -71.374 0.67 61.31 O HETATM 9507 O3 PO4 B 703 -43.645 -25.462 -73.257 0.67 69.37 O1- HETATM 9508 O4 PO4 B 703 -42.840 -23.196 -73.210 0.67 61.81 O HETATM 9509 O HOH A 801 -47.345 -12.285 -15.083 1.00 50.13 O HETATM 9510 O HOH A 802 -32.327 -24.876 -5.665 1.00 74.91 O HETATM 9511 O HOH A 803 -10.614 -8.795 -30.308 1.00108.70 O HETATM 9512 O HOH A 804 -20.041 -8.489 -11.044 1.00 47.46 O HETATM 9513 O HOH A 805 -35.573 -13.273 -2.946 1.00 57.11 O HETATM 9514 O HOH A 806 -17.554 -14.633 -17.295 1.00 48.78 O HETATM 9515 O HOH B 801 -55.525 -25.989 -60.388 1.00 51.97 O HETATM 9516 O HOH B 802 -43.003 -9.296 -65.938 1.00 53.82 O HETATM 9517 O HOH B 803 -58.248 -13.826 -57.754 1.00 64.21 O CONECT 9472 9473 9474 CONECT 9473 9472 CONECT 9474 9472 9475 9476 CONECT 9475 9474 CONECT 9476 9474 9477 CONECT 9477 9476 CONECT 9478 9479 9480 CONECT 9479 9478 CONECT 9480 9478 9481 9482 CONECT 9481 9480 CONECT 9482 9480 9483 CONECT 9483 9482 CONECT 9484 9485 9486 9487 9488 CONECT 9485 9484 CONECT 9486 9484 CONECT 9487 9484 CONECT 9488 9484 CONECT 9489 9490 9491 9492 9493 CONECT 9490 9489 CONECT 9491 9489 CONECT 9492 9489 CONECT 9493 9489 CONECT 9494 9495 9496 9497 9498 CONECT 9495 9494 CONECT 9496 9494 CONECT 9497 9494 CONECT 9498 9494 CONECT 9499 9500 9501 9502 9503 CONECT 9500 9499 CONECT 9501 9499 CONECT 9502 9499 CONECT 9503 9499 CONECT 9504 9505 9506 9507 9508 CONECT 9505 9504 CONECT 9506 9504 CONECT 9507 9504 CONECT 9508 9504 MASTER 332 0 7 56 22 0 11 6 9498 2 37 94 END