HEADER TRANSFERASE 12-FEB-19 6QO2 TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 1 (1H-INDOLE-5- TITLE 3 CARBOXAMIDE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 24-JAN-24 6QO2 1 REMARK REVDAT 3 26-AUG-20 6QO2 1 JRNL REVDAT 2 05-AUG-20 6QO2 1 JRNL REVDAT 1 04-MAR-20 6QO2 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 58314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.6140 - 4.6237 1.00 2834 155 0.1704 0.1833 REMARK 3 2 4.6237 - 3.6702 1.00 2723 152 0.1402 0.1552 REMARK 3 3 3.6702 - 3.2063 1.00 2695 150 0.1667 0.2008 REMARK 3 4 3.2063 - 2.9132 1.00 2676 135 0.1858 0.2262 REMARK 3 5 2.9132 - 2.7044 1.00 2671 148 0.1887 0.2194 REMARK 3 6 2.7044 - 2.5449 1.00 2642 138 0.1772 0.1912 REMARK 3 7 2.5449 - 2.4175 1.00 2676 117 0.1704 0.1935 REMARK 3 8 2.4175 - 2.3122 1.00 2630 147 0.1648 0.2062 REMARK 3 9 2.3122 - 2.2232 0.99 2625 139 0.1677 0.2217 REMARK 3 10 2.2232 - 2.1465 0.99 2617 158 0.1695 0.1904 REMARK 3 11 2.1465 - 2.0794 0.99 2602 139 0.1720 0.2111 REMARK 3 12 2.0794 - 2.0199 0.99 2619 148 0.1756 0.2042 REMARK 3 13 2.0199 - 1.9668 0.99 2600 142 0.1742 0.2193 REMARK 3 14 1.9668 - 1.9188 0.99 2582 145 0.1725 0.1954 REMARK 3 15 1.9188 - 1.8752 0.99 2600 131 0.1781 0.2134 REMARK 3 16 1.8752 - 1.8352 0.99 2606 143 0.1905 0.1891 REMARK 3 17 1.8352 - 1.7985 0.99 2568 141 0.1956 0.2380 REMARK 3 18 1.7985 - 1.7646 0.99 2567 156 0.2165 0.2861 REMARK 3 19 1.7646 - 1.7331 0.99 2582 147 0.2274 0.3209 REMARK 3 20 1.7331 - 1.7037 0.99 2618 117 0.2322 0.2533 REMARK 3 21 1.7037 - 1.6762 0.98 2614 119 0.2330 0.2885 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3375 REMARK 3 ANGLE : 1.004 4624 REMARK 3 CHIRALITY : 0.041 521 REMARK 3 PLANARITY : 0.006 600 REMARK 3 DIHEDRAL : 11.933 1222 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.6743 13.4226 -22.4380 REMARK 3 T TENSOR REMARK 3 T11: 0.3090 T22: 0.3792 REMARK 3 T33: 0.2606 T12: -0.0300 REMARK 3 T13: 0.0166 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: -0.0181 L22: 0.0785 REMARK 3 L33: 0.1292 L12: 0.0105 REMARK 3 L13: -0.0062 L23: -0.0370 REMARK 3 S TENSOR REMARK 3 S11: -0.1083 S12: 0.6358 S13: 0.0200 REMARK 3 S21: -0.4239 S22: 0.0072 S23: -0.0239 REMARK 3 S31: 0.2377 S32: -0.2136 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.0892 1.2893 -31.0465 REMARK 3 T TENSOR REMARK 3 T11: 0.6793 T22: 0.5082 REMARK 3 T33: 0.6134 T12: -0.1559 REMARK 3 T13: -0.0764 T23: -0.1000 REMARK 3 L TENSOR REMARK 3 L11: 0.0059 L22: 0.0099 REMARK 3 L33: 0.0086 L12: -0.0062 REMARK 3 L13: -0.0120 L23: 0.0134 REMARK 3 S TENSOR REMARK 3 S11: 0.1264 S12: -0.1691 S13: 0.0739 REMARK 3 S21: -0.1363 S22: -0.0271 S23: 0.1021 REMARK 3 S31: -0.0292 S32: -0.0586 S33: -0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.5144 20.0177 -15.0732 REMARK 3 T TENSOR REMARK 3 T11: 0.2791 T22: 0.3106 REMARK 3 T33: 0.2669 T12: 0.0298 REMARK 3 T13: -0.0086 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.3759 L22: 0.1946 REMARK 3 L33: 0.1840 L12: 0.2750 REMARK 3 L13: -0.2101 L23: -0.2083 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: 0.4041 S13: 0.1465 REMARK 3 S21: -0.1566 S22: 0.0750 S23: 0.0574 REMARK 3 S31: -0.0433 S32: -0.2898 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6032 17.3120 -6.2001 REMARK 3 T TENSOR REMARK 3 T11: 0.2224 T22: 0.2407 REMARK 3 T33: 0.2647 T12: 0.0061 REMARK 3 T13: 0.0074 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.4795 L22: 0.0340 REMARK 3 L33: 0.5945 L12: -0.1493 REMARK 3 L13: -0.2449 L23: 0.0263 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: 0.0065 S13: 0.0685 REMARK 3 S21: -0.1004 S22: 0.0413 S23: -0.0516 REMARK 3 S31: -0.0763 S32: -0.0710 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8405 8.8504 -12.1494 REMARK 3 T TENSOR REMARK 3 T11: 0.2216 T22: 0.2064 REMARK 3 T33: 0.2453 T12: -0.0124 REMARK 3 T13: 0.0197 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.7922 L22: 0.0008 REMARK 3 L33: 0.7837 L12: 0.1185 REMARK 3 L13: -0.1298 L23: 0.1468 REMARK 3 S TENSOR REMARK 3 S11: -0.0666 S12: -0.0361 S13: -0.0428 REMARK 3 S21: -0.0243 S22: 0.0609 S23: -0.0195 REMARK 3 S31: 0.0481 S32: 0.0367 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.4221 9.0136 -2.6289 REMARK 3 T TENSOR REMARK 3 T11: 0.2047 T22: 0.2380 REMARK 3 T33: 0.2357 T12: -0.0045 REMARK 3 T13: 0.0036 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.0006 L22: 0.0095 REMARK 3 L33: 0.0381 L12: -0.0128 REMARK 3 L13: -0.0425 L23: 0.0276 REMARK 3 S TENSOR REMARK 3 S11: -0.0637 S12: -0.1992 S13: -0.0451 REMARK 3 S21: -0.0558 S22: 0.0250 S23: 0.0319 REMARK 3 S31: 0.0293 S32: 0.0269 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7377 9.0814 -20.1705 REMARK 3 T TENSOR REMARK 3 T11: 0.2431 T22: 0.2395 REMARK 3 T33: 0.2301 T12: -0.0223 REMARK 3 T13: 0.0046 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 0.7154 L22: 0.0834 REMARK 3 L33: 0.2987 L12: 0.1128 REMARK 3 L13: -0.3546 L23: -0.1921 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: 0.1457 S13: -0.0085 REMARK 3 S21: 0.0197 S22: -0.0622 S23: 0.1166 REMARK 3 S31: 0.0600 S32: -0.0793 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3941 4.7537 -40.8082 REMARK 3 T TENSOR REMARK 3 T11: 0.3411 T22: 0.2795 REMARK 3 T33: 0.2525 T12: -0.0448 REMARK 3 T13: 0.0379 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.1890 L22: 0.1666 REMARK 3 L33: 0.0890 L12: -0.1155 REMARK 3 L13: 0.0531 L23: 0.1003 REMARK 3 S TENSOR REMARK 3 S11: 0.0644 S12: -0.0197 S13: 0.0661 REMARK 3 S21: -0.2652 S22: 0.0591 S23: -0.1911 REMARK 3 S31: -0.1074 S32: 0.2597 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6649 2.2309 -24.1040 REMARK 3 T TENSOR REMARK 3 T11: 0.2836 T22: 0.3136 REMARK 3 T33: 0.2434 T12: 0.0361 REMARK 3 T13: -0.0474 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 0.3066 L22: 0.0785 REMARK 3 L33: 0.0497 L12: 0.1551 REMARK 3 L13: -0.2168 L23: 0.0485 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.0964 S13: 0.1771 REMARK 3 S21: 0.1475 S22: 0.1242 S23: -0.4137 REMARK 3 S31: 0.1308 S32: 0.2023 S33: 0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5254 17.7055 -36.5199 REMARK 3 T TENSOR REMARK 3 T11: 0.2772 T22: 0.2854 REMARK 3 T33: 0.2462 T12: 0.0220 REMARK 3 T13: -0.0218 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.2814 L22: 0.6626 REMARK 3 L33: 0.7485 L12: 0.4997 REMARK 3 L13: 0.1511 L23: -0.3647 REMARK 3 S TENSOR REMARK 3 S11: -0.0395 S12: 0.1429 S13: 0.0785 REMARK 3 S21: -0.1503 S22: -0.0534 S23: 0.4370 REMARK 3 S31: -0.1546 S32: -0.2236 S33: -0.0010 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9555 19.6983 -27.0528 REMARK 3 T TENSOR REMARK 3 T11: 0.2577 T22: 0.2056 REMARK 3 T33: 0.2271 T12: -0.0240 REMARK 3 T13: 0.0136 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.5862 L22: 0.3471 REMARK 3 L33: 0.9974 L12: 0.0036 REMARK 3 L13: -0.3259 L23: 0.3909 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: 0.0489 S13: 0.0943 REMARK 3 S21: -0.1959 S22: 0.0570 S23: -0.0269 REMARK 3 S31: -0.0759 S32: -0.0041 S33: 0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8904 18.8125 4.9407 REMARK 3 T TENSOR REMARK 3 T11: 0.2431 T22: 0.3549 REMARK 3 T33: 0.2818 T12: 0.0168 REMARK 3 T13: -0.0215 T23: -0.0628 REMARK 3 L TENSOR REMARK 3 L11: 0.3353 L22: 0.4417 REMARK 3 L33: -0.1382 L12: 0.2863 REMARK 3 L13: -0.1844 L23: 0.0457 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: -0.3804 S13: 0.2067 REMARK 3 S21: 0.1660 S22: 0.0602 S23: -0.0782 REMARK 3 S31: 0.0296 S32: 0.0472 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100508. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58378 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 87.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.85000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 6NVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.20800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.55650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.94650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.55650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.20800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.94650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 SER B 19 REMARK 465 LEU B 20 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 LEU A 29 CD1 CD2 REMARK 470 ARG A 39 CZ NH1 NH2 REMARK 470 GLN A 97 OE1 NE2 REMARK 470 GLU A 180 CD OE1 OE2 REMARK 470 ARG A 216 CD NE CZ NH1 NH2 REMARK 470 ARG B 17 NE CZ NH1 NH2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ILE B 25 CG1 CG2 CD1 REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 ARG B 39 CD NE CZ NH1 NH2 REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 46 CE NZ REMARK 470 GLU B 77 CD OE1 OE2 REMARK 470 VAL B 159 CG1 CG2 REMARK 470 LEU B 178 CG CD1 CD2 REMARK 470 GLU B 180 CD OE1 OE2 REMARK 470 HIS B 204 ND1 CD2 CE1 NE2 REMARK 470 LYS B 206 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -130.24 52.30 REMARK 500 PRO A 157 107.86 -51.76 REMARK 500 ARG B 110 -169.43 -129.04 REMARK 500 TYR B 111 -140.08 49.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JAW A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JAW B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QO2 A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QO2 B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QO2 GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QO2 SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QO2 GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QO2 SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JAW A 301 12 HET JAW B 301 12 HETNAM JAW 1~{H}-INDOLE-5-CARBOXAMIDE FORMUL 3 JAW 2(C9 H8 N2 O) FORMUL 5 HOH *275(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 SER A 19 1 7 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 ASP A 115 ALA A 123 1 9 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 GLY A 228 5 5 HELIX 12 AB3 PHE B 9 GLN B 18 5 10 HELIX 13 AB4 GLY B 22 ALA B 27 1 6 HELIX 14 AB5 ARG B 38 THR B 41 5 4 HELIX 15 AB6 LYS B 62 CYS B 74 1 13 HELIX 16 AB7 THR B 91 SER B 99 1 9 HELIX 17 AB8 GLN B 116 ALA B 123 1 8 HELIX 18 AB9 GLY B 141 ARG B 154 1 14 HELIX 19 AC1 PRO B 196 SER B 201 5 6 HELIX 20 AC2 ASP B 203 ARG B 223 1 21 HELIX 21 AC3 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N ILE A 3 O ASP A 31 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 3.72 CISPEP 2 ARG B 186 PRO B 187 0 2.44 SITE 1 AC1 9 PRO A 83 PRO A 85 SER A 132 ILE A 133 SITE 2 AC1 9 GLY A 134 TYR A 136 LEU A 138 GLY A 140 SITE 3 AC1 9 GLY A 141 SITE 1 AC2 10 PRO B 83 PRO B 85 SER B 132 ILE B 133 SITE 2 AC2 10 GLY B 134 TYR B 136 LEU B 138 GLY B 140 SITE 3 AC2 10 GLY B 141 HOH B 401 CRYST1 74.416 77.893 87.113 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013438 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011479 0.00000