HEADER TRANSFERASE 12-FEB-19 6QO4 TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 3 (2-(5-ISOXAZOLYL) TITLE 3 PHENOL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 24-JAN-24 6QO4 1 REMARK REVDAT 3 26-AUG-20 6QO4 1 JRNL REVDAT 2 05-AUG-20 6QO4 1 JRNL REVDAT 1 04-MAR-20 6QO4 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 49599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.2549 - 4.5698 1.00 2990 141 0.1671 0.1727 REMARK 3 2 4.5698 - 3.6273 1.00 2846 144 0.1457 0.1777 REMARK 3 3 3.6273 - 3.1688 1.00 2800 147 0.1844 0.2251 REMARK 3 4 3.1688 - 2.8791 1.00 2795 150 0.2022 0.2512 REMARK 3 5 2.8791 - 2.6728 1.00 2790 130 0.2046 0.2500 REMARK 3 6 2.6728 - 2.5152 1.00 2785 140 0.1889 0.2533 REMARK 3 7 2.5152 - 2.3892 1.00 2722 153 0.1831 0.2030 REMARK 3 8 2.3892 - 2.2852 1.00 2778 157 0.1784 0.2294 REMARK 3 9 2.2852 - 2.1972 1.00 2746 132 0.1823 0.1965 REMARK 3 10 2.1972 - 2.1214 1.00 2747 139 0.1870 0.2263 REMARK 3 11 2.1214 - 2.0551 1.00 2755 138 0.1872 0.2163 REMARK 3 12 2.0551 - 1.9963 1.00 2743 163 0.1954 0.2524 REMARK 3 13 1.9963 - 1.9438 1.00 2775 109 0.1877 0.2164 REMARK 3 14 1.9438 - 1.8963 1.00 2734 122 0.2026 0.2767 REMARK 3 15 1.8963 - 1.8532 1.00 2761 125 0.2163 0.2789 REMARK 3 16 1.8532 - 1.8138 1.00 2756 141 0.2447 0.2833 REMARK 3 17 1.8138 - 1.7775 1.00 2694 151 0.2891 0.3070 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3358 REMARK 3 ANGLE : 1.072 4596 REMARK 3 CHIRALITY : 0.043 515 REMARK 3 PLANARITY : 0.006 599 REMARK 3 DIHEDRAL : 11.724 1215 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.3004 -14.1536 22.7027 REMARK 3 T TENSOR REMARK 3 T11: 0.3525 T22: 0.5748 REMARK 3 T33: 0.3024 T12: -0.0007 REMARK 3 T13: -0.0285 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.1487 L22: -0.0236 REMARK 3 L33: 0.8769 L12: -0.1456 REMARK 3 L13: 0.9002 L23: -0.1786 REMARK 3 S TENSOR REMARK 3 S11: 0.1296 S12: -0.6908 S13: 0.0085 REMARK 3 S21: 0.1313 S22: -0.0647 S23: -0.3406 REMARK 3 S31: -0.0501 S32: -0.6328 S33: -0.0013 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.8911 -0.5449 30.5984 REMARK 3 T TENSOR REMARK 3 T11: 0.9895 T22: 0.7911 REMARK 3 T33: 0.9103 T12: 0.2461 REMARK 3 T13: 0.2563 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.2592 L22: 0.1092 REMARK 3 L33: 0.5825 L12: 0.0648 REMARK 3 L13: 0.3084 L23: 0.0031 REMARK 3 S TENSOR REMARK 3 S11: -0.4605 S12: 0.8639 S13: -0.0950 REMARK 3 S21: 0.3221 S22: -0.6699 S23: 0.5527 REMARK 3 S31: 0.3882 S32: -0.7898 S33: -0.0147 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.0663 -21.7395 13.7978 REMARK 3 T TENSOR REMARK 3 T11: 0.3309 T22: 0.4226 REMARK 3 T33: 0.3027 T12: -0.0867 REMARK 3 T13: 0.0180 T23: 0.0680 REMARK 3 L TENSOR REMARK 3 L11: 1.9326 L22: 1.0976 REMARK 3 L33: 1.1209 L12: 0.0786 REMARK 3 L13: 0.3125 L23: -0.9854 REMARK 3 S TENSOR REMARK 3 S11: 0.1450 S12: -0.5132 S13: -0.3126 REMARK 3 S21: 0.1725 S22: 0.0942 S23: 0.2061 REMARK 3 S31: 0.4033 S32: -0.3304 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.5417 -16.6957 6.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.2271 T22: 0.2833 REMARK 3 T33: 0.2867 T12: -0.0059 REMARK 3 T13: 0.0168 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.4477 L22: 1.0927 REMARK 3 L33: 2.0636 L12: 0.7642 REMARK 3 L13: 1.8294 L23: 0.5686 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: -0.1116 S13: -0.0850 REMARK 3 S21: 0.0321 S22: 0.0952 S23: -0.0216 REMARK 3 S31: 0.0470 S32: -0.1843 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0171 -4.3599 12.6483 REMARK 3 T TENSOR REMARK 3 T11: 0.2827 T22: 0.2159 REMARK 3 T33: 0.3278 T12: -0.0116 REMARK 3 T13: -0.0503 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 1.8919 L22: 0.1226 REMARK 3 L33: 1.5344 L12: 0.2257 REMARK 3 L13: 0.7311 L23: -0.3422 REMARK 3 S TENSOR REMARK 3 S11: -0.2617 S12: 0.1046 S13: 0.4164 REMARK 3 S21: -0.1434 S22: -0.0398 S23: 0.0790 REMARK 3 S31: -0.3197 S32: 0.2520 S33: -0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5397 -13.9824 10.9792 REMARK 3 T TENSOR REMARK 3 T11: 0.2572 T22: 0.2808 REMARK 3 T33: 0.2640 T12: 0.0400 REMARK 3 T13: 0.0053 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 2.4884 L22: 0.6697 REMARK 3 L33: 1.7003 L12: 0.7883 REMARK 3 L13: 1.5231 L23: -0.0822 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: -0.1253 S13: -0.0484 REMARK 3 S21: 0.3303 S22: 0.0799 S23: 0.0175 REMARK 3 S31: 0.1577 S32: -0.0514 S33: 0.0004 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.4646 -9.1319 2.6456 REMARK 3 T TENSOR REMARK 3 T11: 0.2422 T22: 0.2450 REMARK 3 T33: 0.2848 T12: 0.0127 REMARK 3 T13: 0.0148 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.0552 L22: -0.2383 REMARK 3 L33: 0.5185 L12: -0.0223 REMARK 3 L13: 0.3758 L23: 0.0021 REMARK 3 S TENSOR REMARK 3 S11: -0.0928 S12: 0.2864 S13: 0.3463 REMARK 3 S21: 0.0866 S22: -0.0218 S23: -0.0545 REMARK 3 S31: -0.1439 S32: 0.1108 S33: -0.0004 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4300 -9.6310 20.0423 REMARK 3 T TENSOR REMARK 3 T11: 0.2894 T22: 0.2839 REMARK 3 T33: 0.2515 T12: 0.0159 REMARK 3 T13: 0.0073 T23: -0.0574 REMARK 3 L TENSOR REMARK 3 L11: 2.1497 L22: 0.6668 REMARK 3 L33: 0.1392 L12: 1.1938 REMARK 3 L13: 0.4913 L23: -0.6305 REMARK 3 S TENSOR REMARK 3 S11: 0.0540 S12: -0.2572 S13: 0.0508 REMARK 3 S21: 0.1460 S22: 0.0144 S23: 0.0618 REMARK 3 S31: -0.0246 S32: -0.0749 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7866 -4.6406 41.3158 REMARK 3 T TENSOR REMARK 3 T11: 0.3739 T22: 0.2941 REMARK 3 T33: 0.3022 T12: 0.0530 REMARK 3 T13: -0.0798 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 0.7275 L22: 0.4592 REMARK 3 L33: 0.7900 L12: 0.5934 REMARK 3 L13: -0.4968 L23: -0.1485 REMARK 3 S TENSOR REMARK 3 S11: 0.1239 S12: -0.0960 S13: -0.0946 REMARK 3 S21: 0.3049 S22: -0.0054 S23: -0.2011 REMARK 3 S31: 0.1359 S32: 0.2287 S33: -0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1364 -2.3010 24.1639 REMARK 3 T TENSOR REMARK 3 T11: 0.2782 T22: 0.3103 REMARK 3 T33: 0.2947 T12: -0.0270 REMARK 3 T13: 0.0301 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 1.2548 L22: 0.0743 REMARK 3 L33: 0.6506 L12: 0.2977 REMARK 3 L13: 0.2597 L23: -0.2023 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: 0.1931 S13: -0.1456 REMARK 3 S21: -0.1035 S22: 0.0825 S23: -0.3574 REMARK 3 S31: 0.0716 S32: 0.1634 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0323 -22.0708 32.3248 REMARK 3 T TENSOR REMARK 3 T11: 0.4012 T22: 0.3757 REMARK 3 T33: 0.3569 T12: -0.0335 REMARK 3 T13: -0.0379 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 0.7196 L22: 0.1545 REMARK 3 L33: 0.4337 L12: -0.4559 REMARK 3 L13: -0.2905 L23: 0.0998 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: 0.1407 S13: -0.2427 REMARK 3 S21: 0.1637 S22: -0.0977 S23: 0.4950 REMARK 3 S31: 0.4579 S32: -0.4276 S33: -0.0002 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0765 -26.5163 32.7359 REMARK 3 T TENSOR REMARK 3 T11: 0.4125 T22: 0.3375 REMARK 3 T33: 0.4360 T12: -0.1222 REMARK 3 T13: -0.0204 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.0552 L22: 0.5214 REMARK 3 L33: 0.9282 L12: -0.9665 REMARK 3 L13: -0.3718 L23: 0.0862 REMARK 3 S TENSOR REMARK 3 S11: 0.1738 S12: -0.2757 S13: -0.2698 REMARK 3 S21: 0.6815 S22: -0.7268 S23: 0.9698 REMARK 3 S31: 0.9481 S32: -0.8658 S33: -0.0229 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3404 -5.6176 43.3435 REMARK 3 T TENSOR REMARK 3 T11: 0.3565 T22: 0.3619 REMARK 3 T33: 0.3213 T12: 0.0108 REMARK 3 T13: -0.0456 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.6450 L22: 0.7747 REMARK 3 L33: 0.2314 L12: 0.4133 REMARK 3 L13: -0.0570 L23: 0.0963 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: -0.1973 S13: 0.2149 REMARK 3 S21: 0.1652 S22: 0.0390 S23: 0.3217 REMARK 3 S31: 0.0846 S32: -0.1001 S33: -0.0011 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6066 -21.5338 28.6946 REMARK 3 T TENSOR REMARK 3 T11: 0.3288 T22: 0.2282 REMARK 3 T33: 0.2863 T12: -0.0010 REMARK 3 T13: -0.0649 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.1126 L22: 1.4468 REMARK 3 L33: 0.6020 L12: -0.2327 REMARK 3 L13: -0.1491 L23: 1.5775 REMARK 3 S TENSOR REMARK 3 S11: 0.0717 S12: 0.0083 S13: -0.2018 REMARK 3 S21: 0.1890 S22: 0.0673 S23: -0.1706 REMARK 3 S31: 0.1777 S32: 0.1468 S33: -0.0002 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6936 -17.0285 31.5945 REMARK 3 T TENSOR REMARK 3 T11: 0.3777 T22: 0.3047 REMARK 3 T33: 0.2641 T12: -0.0096 REMARK 3 T13: -0.0479 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.4456 L22: 0.2345 REMARK 3 L33: 2.0201 L12: 0.6057 REMARK 3 L13: 1.3078 L23: 0.8756 REMARK 3 S TENSOR REMARK 3 S11: -0.1718 S12: -0.1406 S13: -0.1527 REMARK 3 S21: -0.1773 S22: 0.1413 S23: 0.1843 REMARK 3 S31: -0.1351 S32: -0.0756 S33: -0.0011 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1618 -18.5733 33.0136 REMARK 3 T TENSOR REMARK 3 T11: 0.3461 T22: 0.2767 REMARK 3 T33: 0.2943 T12: 0.0485 REMARK 3 T13: -0.0620 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 0.0889 L22: 0.6073 REMARK 3 L33: 0.0851 L12: 0.4759 REMARK 3 L13: 0.1921 L23: 0.1424 REMARK 3 S TENSOR REMARK 3 S11: 0.0814 S12: -0.0801 S13: -0.0061 REMARK 3 S21: 0.3462 S22: 0.0954 S23: -0.0359 REMARK 3 S31: 0.0663 S32: 0.0837 S33: 0.0001 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2323 -19.2001 17.2464 REMARK 3 T TENSOR REMARK 3 T11: 0.2163 T22: 0.2389 REMARK 3 T33: 0.2721 T12: -0.0096 REMARK 3 T13: 0.0019 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.8133 L22: 1.2552 REMARK 3 L33: 1.1143 L12: -0.6097 REMARK 3 L13: 0.0922 L23: -1.8173 REMARK 3 S TENSOR REMARK 3 S11: 0.0766 S12: 0.0846 S13: -0.1630 REMARK 3 S21: 0.2224 S22: 0.0555 S23: -0.0677 REMARK 3 S31: 0.0421 S32: -0.0818 S33: -0.0001 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 184 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.7561 -19.0799 -5.1478 REMARK 3 T TENSOR REMARK 3 T11: 0.2527 T22: 0.3952 REMARK 3 T33: 0.2439 T12: -0.0084 REMARK 3 T13: 0.0225 T23: -0.0653 REMARK 3 L TENSOR REMARK 3 L11: 1.6980 L22: 1.2305 REMARK 3 L33: -0.4994 L12: -0.6185 REMARK 3 L13: 0.0057 L23: -0.1936 REMARK 3 S TENSOR REMARK 3 S11: 0.0782 S12: 0.3274 S13: -0.2794 REMARK 3 S21: -0.1315 S22: 0.0007 S23: -0.1082 REMARK 3 S31: -0.0053 S32: 0.0264 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49667 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 78.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.88100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 6NVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.24350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.13600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.45100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.13600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.24350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.45100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 LEU A 160 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 VAL B 159 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 GLU A 180 CD OE1 OE2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 VAL B 16 CG1 CG2 REMARK 470 ARG B 17 NE CZ NH1 NH2 REMARK 470 GLN B 18 CG CD OE1 NE2 REMARK 470 LEU B 20 CG CD1 CD2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 ASP B 31 CG OD1 OD2 REMARK 470 ARG B 39 CZ NH1 NH2 REMARK 470 VAL B 44 CB CG1 CG2 REMARK 470 LYS B 46 CE NZ REMARK 470 GLU B 77 OE1 OE2 REMARK 470 LYS B 206 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 108.33 -52.00 REMARK 500 ASP A 115 124.85 -39.04 REMARK 500 GLN B 18 76.46 20.61 REMARK 500 SER B 19 -157.39 -173.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 97T A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 97T B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QO4 A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QO4 B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QO4 GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QO4 SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QO4 GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QO4 SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET 97T A 301 12 HET 97T B 301 12 HETNAM 97T 2-(1,2-OXAZOL-5-YL)PHENOL FORMUL 3 97T 2(C9 H7 N O2) FORMUL 5 HOH *226(H2 O) HELIX 1 AA1 PHE A 9 GLN A 18 1 10 HELIX 2 AA2 PRO A 21 ALA A 27 1 7 HELIX 3 AA3 ARG A 38 THR A 41 5 4 HELIX 4 AA4 LYS A 62 CYS A 74 1 13 HELIX 5 AA5 THR A 91 SER A 99 1 9 HELIX 6 AA6 ASP A 115 ALA A 123 1 9 HELIX 7 AA7 GLY A 141 ARG A 154 1 14 HELIX 8 AA8 PRO A 196 SER A 201 5 6 HELIX 9 AA9 ASP A 203 ARG A 223 1 21 HELIX 10 AB1 PRO A 224 LEU A 227 5 4 HELIX 11 AB2 PHE B 9 ARG B 17 5 9 HELIX 12 AB3 SER B 19 ALA B 27 1 9 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 GLN B 116 ALA B 123 1 8 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 196 SER B 201 1 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 ASP A 31 ASP A 36 0 SHEET 2 AA1 6 LYS A 2 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 0.73 CISPEP 2 ARG B 186 PRO B 187 0 1.18 SITE 1 AC1 12 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 12 TYR A 111 SER A 132 ILE A 133 GLY A 134 SITE 3 AC1 12 TYR A 136 LEU A 138 GLY A 140 GLY A 141 SITE 1 AC2 11 PRO B 83 THR B 84 PRO B 85 TYR B 111 SITE 2 AC2 11 SER B 132 ILE B 133 GLY B 134 TYR B 136 SITE 3 AC2 11 LEU B 138 GLY B 140 GLY B 141 CRYST1 74.487 78.902 86.272 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013425 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011591 0.00000