HEADER TRANSFERASE 12-FEB-19 6QO6 TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 4 (5- TITLE 3 METHOXYBENZIMIDAZOLE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 24-JAN-24 6QO6 1 REMARK REVDAT 3 26-AUG-20 6QO6 1 JRNL REVDAT 2 05-AUG-20 6QO6 1 JRNL REVDAT 1 04-MAR-20 6QO6 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 52072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.2453 - 4.5711 1.00 2945 151 0.1754 0.1838 REMARK 3 2 4.5711 - 3.6284 1.00 2803 165 0.1485 0.1757 REMARK 3 3 3.6284 - 3.1698 1.00 2771 157 0.1845 0.2303 REMARK 3 4 3.1698 - 2.8800 1.00 2782 144 0.1997 0.2028 REMARK 3 5 2.8800 - 2.6736 1.00 2737 161 0.1987 0.2524 REMARK 3 6 2.6736 - 2.5160 1.00 2740 144 0.1897 0.2371 REMARK 3 7 2.5160 - 2.3900 1.00 2752 129 0.1891 0.1997 REMARK 3 8 2.3900 - 2.2859 1.00 2747 133 0.1794 0.2198 REMARK 3 9 2.2859 - 2.1979 1.00 2753 130 0.1798 0.2283 REMARK 3 10 2.1979 - 2.1221 1.00 2723 142 0.1819 0.2175 REMARK 3 11 2.1221 - 2.0557 1.00 2733 143 0.1823 0.2167 REMARK 3 12 2.0557 - 1.9969 1.00 2695 163 0.1898 0.2006 REMARK 3 13 1.9969 - 1.9444 1.00 2742 133 0.1800 0.2259 REMARK 3 14 1.9444 - 1.8969 1.00 2695 143 0.1949 0.2281 REMARK 3 15 1.8969 - 1.8538 1.00 2744 138 0.2126 0.2865 REMARK 3 16 1.8538 - 1.8144 1.00 2705 147 0.2304 0.2502 REMARK 3 17 1.8144 - 1.7781 1.00 2727 126 0.2446 0.3192 REMARK 3 18 1.7781 - 1.7445 1.00 2704 125 0.2622 0.2870 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3329 REMARK 3 ANGLE : 1.008 4559 REMARK 3 CHIRALITY : 0.043 515 REMARK 3 PLANARITY : 0.006 591 REMARK 3 DIHEDRAL : 12.651 1200 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.4466 13.7570 -21.7451 REMARK 3 T TENSOR REMARK 3 T11: 0.3108 T22: 0.4987 REMARK 3 T33: 0.3232 T12: -0.0144 REMARK 3 T13: 0.0137 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 1.5865 L22: 3.4078 REMARK 3 L33: 2.3450 L12: 0.0657 REMARK 3 L13: -0.7475 L23: 0.0870 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: 0.8159 S13: -0.2664 REMARK 3 S21: -0.6331 S22: 0.0302 S23: -0.2045 REMARK 3 S31: 0.1339 S32: -0.3871 S33: -0.0042 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.9216 19.7370 -11.7598 REMARK 3 T TENSOR REMARK 3 T11: 0.2625 T22: 0.3198 REMARK 3 T33: 0.2796 T12: 0.0359 REMARK 3 T13: 0.0126 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.8992 L22: 2.2692 REMARK 3 L33: 2.4385 L12: -0.0525 REMARK 3 L13: -0.5644 L23: 1.2072 REMARK 3 S TENSOR REMARK 3 S11: 0.0874 S12: 0.2415 S13: 0.1880 REMARK 3 S21: -0.2142 S22: 0.0864 S23: -0.0427 REMARK 3 S31: -0.2756 S32: -0.1720 S33: -0.1102 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8545 9.6206 -11.4231 REMARK 3 T TENSOR REMARK 3 T11: 0.2340 T22: 0.2162 REMARK 3 T33: 0.2732 T12: -0.0181 REMARK 3 T13: -0.0003 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.8083 L22: 0.0743 REMARK 3 L33: 1.9301 L12: -0.6008 REMARK 3 L13: -1.2115 L23: 0.1511 REMARK 3 S TENSOR REMARK 3 S11: -0.0858 S12: 0.0222 S13: -0.2360 REMARK 3 S21: -0.0562 S22: 0.0356 S23: 0.0120 REMARK 3 S31: 0.1157 S32: 0.0401 S33: 0.0203 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1286 0.6859 -25.1538 REMARK 3 T TENSOR REMARK 3 T11: 0.3699 T22: 0.2181 REMARK 3 T33: 0.4365 T12: -0.0189 REMARK 3 T13: -0.0351 T23: -0.2467 REMARK 3 L TENSOR REMARK 3 L11: 5.2888 L22: 1.2315 REMARK 3 L33: 2.8954 L12: 1.6717 REMARK 3 L13: -0.0186 L23: -1.3979 REMARK 3 S TENSOR REMARK 3 S11: -0.0867 S12: 0.2555 S13: -0.7062 REMARK 3 S21: -0.4672 S22: -0.4370 S23: 0.4291 REMARK 3 S31: 0.3307 S32: 0.0084 S33: -0.6923 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8189 4.4861 -41.1367 REMARK 3 T TENSOR REMARK 3 T11: 0.3735 T22: 0.2971 REMARK 3 T33: 0.2769 T12: -0.0632 REMARK 3 T13: 0.0560 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.1894 L22: 1.3590 REMARK 3 L33: 1.2485 L12: -0.5554 REMARK 3 L13: -0.0610 L23: -0.2085 REMARK 3 S TENSOR REMARK 3 S11: 0.1396 S12: 0.1395 S13: 0.1375 REMARK 3 S21: -0.2448 S22: -0.0199 S23: -0.2554 REMARK 3 S31: -0.1303 S32: 0.2412 S33: 0.0025 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0495 2.2148 -23.8162 REMARK 3 T TENSOR REMARK 3 T11: 0.2773 T22: 0.3041 REMARK 3 T33: 0.2620 T12: 0.0357 REMARK 3 T13: -0.0331 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.6519 L22: 2.2696 REMARK 3 L33: 0.8509 L12: -0.4091 REMARK 3 L13: -0.4375 L23: 1.0483 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: -0.2448 S13: 0.1149 REMARK 3 S21: -0.0915 S22: 0.1220 S23: -0.3489 REMARK 3 S31: -0.1229 S32: 0.1902 S33: 0.0145 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6111 21.9039 -32.3624 REMARK 3 T TENSOR REMARK 3 T11: 0.3772 T22: 0.3638 REMARK 3 T33: 0.3433 T12: 0.0338 REMARK 3 T13: 0.0148 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 2.8070 L22: 3.1390 REMARK 3 L33: 2.8613 L12: -0.0101 REMARK 3 L13: -0.8172 L23: 1.6231 REMARK 3 S TENSOR REMARK 3 S11: 0.2757 S12: -0.0487 S13: 0.3507 REMARK 3 S21: -0.0294 S22: -0.5550 S23: 0.7409 REMARK 3 S31: -0.4902 S32: -0.6994 S33: -0.0018 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7401 32.0667 -24.3634 REMARK 3 T TENSOR REMARK 3 T11: 0.7023 T22: 0.5796 REMARK 3 T33: 0.7120 T12: 0.0948 REMARK 3 T13: 0.2186 T23: -0.0756 REMARK 3 L TENSOR REMARK 3 L11: 0.2624 L22: 0.0944 REMARK 3 L33: 1.2712 L12: -0.0437 REMARK 3 L13: -0.5475 L23: -0.0080 REMARK 3 S TENSOR REMARK 3 S11: 0.2395 S12: 0.0646 S13: 0.0478 REMARK 3 S21: -0.1181 S22: -0.0750 S23: 0.3183 REMARK 3 S31: -0.2507 S32: -0.7481 S33: -0.1394 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 30 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8774 18.3119 -42.7560 REMARK 3 T TENSOR REMARK 3 T11: 0.4332 T22: 0.4399 REMARK 3 T33: 0.3169 T12: 0.0534 REMARK 3 T13: -0.0411 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 2.5032 L22: 3.3333 REMARK 3 L33: 3.8336 L12: -0.2692 REMARK 3 L13: -0.5411 L23: 1.4610 REMARK 3 S TENSOR REMARK 3 S11: 0.1509 S12: 0.5832 S13: 0.1394 REMARK 3 S21: -0.7924 S22: -0.1880 S23: 0.1544 REMARK 3 S31: -0.5161 S32: -0.5565 S33: -0.0540 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8937 16.5117 -31.6117 REMARK 3 T TENSOR REMARK 3 T11: 0.3357 T22: 0.2494 REMARK 3 T33: 0.2625 T12: -0.0149 REMARK 3 T13: 0.0350 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.0444 L22: 0.9169 REMARK 3 L33: 1.3084 L12: -0.3541 REMARK 3 L13: -0.6892 L23: 1.1623 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: 0.1188 S13: 0.1311 REMARK 3 S21: -0.2359 S22: 0.0471 S23: -0.1139 REMARK 3 S31: -0.1960 S32: 0.0626 S33: -0.0715 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1909 17.1393 -32.2369 REMARK 3 T TENSOR REMARK 3 T11: 0.3280 T22: 0.2631 REMARK 3 T33: 0.2326 T12: -0.0131 REMARK 3 T13: 0.0175 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 2.7651 L22: 0.5238 REMARK 3 L33: 2.6483 L12: -1.1797 REMARK 3 L13: -0.7635 L23: 0.0442 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.0958 S13: -0.1384 REMARK 3 S21: -0.1297 S22: -0.0826 S23: 0.3869 REMARK 3 S31: 0.0056 S32: -0.1218 S33: -0.0621 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1372 18.5514 -32.9533 REMARK 3 T TENSOR REMARK 3 T11: 0.3314 T22: 0.2957 REMARK 3 T33: 0.3112 T12: -0.0538 REMARK 3 T13: 0.0668 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.1698 L22: 0.9493 REMARK 3 L33: 2.0311 L12: -0.4874 REMARK 3 L13: -1.1267 L23: 1.3135 REMARK 3 S TENSOR REMARK 3 S11: 0.1141 S12: -0.0116 S13: 0.1356 REMARK 3 S21: -0.4716 S22: 0.0417 S23: -0.2683 REMARK 3 S31: -0.2323 S32: 0.3415 S33: -0.1303 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6112 17.0577 -22.0233 REMARK 3 T TENSOR REMARK 3 T11: 0.2727 T22: 0.2629 REMARK 3 T33: 0.2635 T12: -0.0024 REMARK 3 T13: 0.0227 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 1.7142 L22: 2.1563 REMARK 3 L33: 1.7174 L12: 0.1401 REMARK 3 L13: -0.3005 L23: -0.1329 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: -0.0464 S13: 0.0761 REMARK 3 S21: -0.2256 S22: 0.0247 S23: 0.1064 REMARK 3 S31: 0.0213 S32: 0.0005 S33: -0.0435 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7107 27.4534 -9.4865 REMARK 3 T TENSOR REMARK 3 T11: 0.4090 T22: 0.2571 REMARK 3 T33: 0.4767 T12: -0.0055 REMARK 3 T13: -0.0995 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 0.9089 L22: 1.9974 REMARK 3 L33: 4.6103 L12: 1.3531 REMARK 3 L13: -2.0323 L23: -2.9651 REMARK 3 S TENSOR REMARK 3 S11: -0.1205 S12: -0.2063 S13: 0.3911 REMARK 3 S21: 0.0939 S22: -0.1940 S23: -0.3420 REMARK 3 S31: -0.7746 S32: 0.0955 S33: -0.1725 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 182 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.9151 22.6353 6.2155 REMARK 3 T TENSOR REMARK 3 T11: 0.2640 T22: 0.3906 REMARK 3 T33: 0.2953 T12: 0.0267 REMARK 3 T13: 0.0238 T23: -0.0818 REMARK 3 L TENSOR REMARK 3 L11: 2.1227 L22: 0.5724 REMARK 3 L33: 1.5757 L12: -0.3206 REMARK 3 L13: -0.4264 L23: -0.2159 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.4387 S13: 0.3811 REMARK 3 S21: 0.2717 S22: 0.1077 S23: 0.1770 REMARK 3 S31: 0.1025 S32: -0.0513 S33: -0.0487 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3286 16.9101 3.7418 REMARK 3 T TENSOR REMARK 3 T11: 0.2249 T22: 0.4801 REMARK 3 T33: 0.3114 T12: 0.0230 REMARK 3 T13: -0.0633 T23: -0.0926 REMARK 3 L TENSOR REMARK 3 L11: 2.3125 L22: 0.7779 REMARK 3 L33: 1.5708 L12: -0.1379 REMARK 3 L13: -0.9801 L23: 0.2903 REMARK 3 S TENSOR REMARK 3 S11: -0.0669 S12: -0.6489 S13: 0.3484 REMARK 3 S21: 0.1278 S22: 0.1126 S23: -0.4558 REMARK 3 S31: 0.0973 S32: -0.1178 S33: -0.0534 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100511. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 292 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52140 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 78.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.92100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 6NVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.03850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.16200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.38600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.16200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.03850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.38600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 24 REMARK 465 ILE A 25 REMARK 465 ASP A 26 REMARK 465 ALA A 27 REMARK 465 GLY A 28 REMARK 465 LEU A 29 REMARK 465 LEU A 160 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ARG B 17 NE CZ NH1 NH2 REMARK 470 SER B 19 OG REMARK 470 LEU B 20 CG CD1 CD2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ILE B 25 CG1 CG2 CD1 REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 ARG B 39 NE CZ NH1 NH2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 46 CE NZ REMARK 470 GLU B 77 CD OE1 OE2 REMARK 470 GLU B 93 CD OE1 OE2 REMARK 470 LEU B 160 CG CD1 CD2 REMARK 470 GLU B 180 CD OE1 OE2 REMARK 470 LYS B 206 CE NZ REMARK 470 ARG B 216 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 -25.40 -157.95 REMARK 500 PRO A 21 -119.21 -65.98 REMARK 500 ASP A 115 126.45 -39.77 REMARK 500 PRO A 157 -63.18 -24.42 REMARK 500 SER B 19 -147.56 60.70 REMARK 500 TYR B 111 -127.53 55.84 REMARK 500 ASP B 135 74.83 -100.77 REMARK 500 VAL B 159 44.92 -85.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5OB A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5OB B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QO6 A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QO6 B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QO6 GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QO6 SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QO6 GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QO6 SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET 5OB A 301 11 HET 5OB B 301 11 HETNAM 5OB 5-METHOXYBENZIMIDAZOLE FORMUL 3 5OB 2(C8 H8 N2 O) FORMUL 5 HOH *251(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 GLN A 18 1 6 HELIX 3 AA3 ARG A 38 THR A 41 5 4 HELIX 4 AA4 LYS A 62 CYS A 74 1 13 HELIX 5 AA5 THR A 91 SER A 99 1 9 HELIX 6 AA6 ASP A 115 ALA A 123 1 9 HELIX 7 AA7 GLY A 141 ARG A 154 1 14 HELIX 8 AA8 PRO A 196 SER A 201 5 6 HELIX 9 AA9 ASP A 203 ARG A 223 1 21 HELIX 10 AB1 PRO A 224 LEU A 227 5 4 HELIX 11 AB2 PHE B 9 ARG B 17 5 9 HELIX 12 AB3 GLN B 18 ALA B 27 1 10 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 GLN B 116 THR B 124 1 9 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 196 SER B 201 5 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 ASP A 31 ASP A 36 0 SHEET 2 AA1 6 LYS A 2 THR A 7 1 N ILE A 3 O ASP A 31 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 1.36 CISPEP 2 ARG B 186 PRO B 187 0 2.35 SITE 1 AC1 12 PRO A 83 THR A 84 PRO A 85 TYR A 111 SITE 2 AC1 12 SER A 132 ILE A 133 GLY A 134 TYR A 136 SITE 3 AC1 12 LEU A 138 GLY A 140 GLY A 141 ALA A 144 SITE 1 AC2 10 PRO B 83 THR B 84 PRO B 85 SER B 132 SITE 2 AC2 10 ILE B 133 GLY B 134 TYR B 136 LEU B 138 SITE 3 AC2 10 GLY B 140 GLY B 141 CRYST1 74.077 78.772 86.324 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013499 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012695 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011584 0.00000