HEADER TRANSFERASE 12-FEB-19 6QOA TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 5 (ISOXAZOLE-5- TITLE 3 CARBOXAMIDE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 GENE: TRMD, MAB_3226C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 24-JAN-24 6QOA 1 REMARK REVDAT 3 26-AUG-20 6QOA 1 JRNL REVDAT 2 05-AUG-20 6QOA 1 JRNL REVDAT 1 04-MAR-20 6QOA 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.2384 - 4.6439 1.00 2795 144 0.1605 0.1734 REMARK 3 2 4.6439 - 3.6862 1.00 2648 162 0.1353 0.1957 REMARK 3 3 3.6862 - 3.2203 1.00 2627 148 0.1773 0.2527 REMARK 3 4 3.2203 - 2.9258 1.00 2609 172 0.1952 0.2190 REMARK 3 5 2.9258 - 2.7161 1.00 2612 127 0.2038 0.2419 REMARK 3 6 2.7161 - 2.5560 1.00 2579 160 0.1936 0.2405 REMARK 3 7 2.5560 - 2.4280 1.00 2601 142 0.1843 0.2311 REMARK 3 8 2.4280 - 2.3223 1.00 2588 149 0.1891 0.2206 REMARK 3 9 2.3223 - 2.2329 1.00 2575 131 0.1775 0.2457 REMARK 3 10 2.2329 - 2.1558 1.00 2588 140 0.1960 0.2766 REMARK 3 11 2.1558 - 2.0884 1.00 2589 134 0.2057 0.2715 REMARK 3 12 2.0884 - 2.0287 1.00 2595 127 0.2122 0.2339 REMARK 3 13 2.0287 - 1.9753 1.00 2571 125 0.2197 0.3050 REMARK 3 14 1.9753 - 1.9271 1.00 2651 99 0.2592 0.3532 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3379 REMARK 3 ANGLE : 1.038 4632 REMARK 3 CHIRALITY : 0.040 525 REMARK 3 PLANARITY : 0.005 605 REMARK 3 DIHEDRAL : 12.325 1233 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9551 11.1526 -25.0935 REMARK 3 T TENSOR REMARK 3 T11: 0.4395 T22: 0.6900 REMARK 3 T33: 0.4281 T12: 0.0247 REMARK 3 T13: -0.0192 T23: -0.0865 REMARK 3 L TENSOR REMARK 3 L11: 0.2968 L22: 0.1930 REMARK 3 L33: 0.4596 L12: -0.1847 REMARK 3 L13: -0.1713 L23: -0.1101 REMARK 3 S TENSOR REMARK 3 S11: 0.2151 S12: 0.9612 S13: -0.1603 REMARK 3 S21: -0.2915 S22: -0.1823 S23: -0.0414 REMARK 3 S31: 0.0879 S32: -0.6306 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.9386 21.4258 -14.8400 REMARK 3 T TENSOR REMARK 3 T11: 0.3890 T22: 0.5360 REMARK 3 T33: 0.4278 T12: 0.1103 REMARK 3 T13: -0.0329 T23: 0.0987 REMARK 3 L TENSOR REMARK 3 L11: 0.6574 L22: 0.1990 REMARK 3 L33: 0.3693 L12: -0.2250 REMARK 3 L13: -0.2269 L23: -0.1318 REMARK 3 S TENSOR REMARK 3 S11: 0.2387 S12: 0.7459 S13: 0.2096 REMARK 3 S21: -0.1839 S22: -0.1968 S23: 0.4574 REMARK 3 S31: -0.4402 S32: -0.5558 S33: 0.0016 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.8100 18.0068 -6.4376 REMARK 3 T TENSOR REMARK 3 T11: 0.2739 T22: 0.3590 REMARK 3 T33: 0.3481 T12: -0.0047 REMARK 3 T13: 0.0181 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.3386 L22: 0.3396 REMARK 3 L33: 1.5725 L12: -0.9318 REMARK 3 L13: -1.1289 L23: 0.3792 REMARK 3 S TENSOR REMARK 3 S11: 0.0968 S12: -0.0256 S13: -0.0067 REMARK 3 S21: 0.1183 S22: 0.0488 S23: 0.2258 REMARK 3 S31: 0.0136 S32: -0.1495 S33: 0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4144 4.8322 -12.6005 REMARK 3 T TENSOR REMARK 3 T11: 0.3255 T22: 0.2911 REMARK 3 T33: 0.4008 T12: -0.0142 REMARK 3 T13: 0.0303 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 0.5348 L22: 0.1697 REMARK 3 L33: 0.4706 L12: 0.0070 REMARK 3 L13: -0.3471 L23: -0.2153 REMARK 3 S TENSOR REMARK 3 S11: -0.2014 S12: -0.1715 S13: -0.3395 REMARK 3 S21: -0.1268 S22: -0.0382 S23: 0.3789 REMARK 3 S31: 0.1340 S32: 0.2098 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0075 13.1331 -6.6526 REMARK 3 T TENSOR REMARK 3 T11: 0.2815 T22: 0.3416 REMARK 3 T33: 0.3216 T12: -0.0237 REMARK 3 T13: -0.0141 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.0081 L22: 0.3427 REMARK 3 L33: 0.8416 L12: -0.0435 REMARK 3 L13: -0.6233 L23: -0.3993 REMARK 3 S TENSOR REMARK 3 S11: -0.0565 S12: -0.0302 S13: -0.1257 REMARK 3 S21: -0.0954 S22: 0.1440 S23: -0.0958 REMARK 3 S31: 0.0405 S32: 0.0846 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0532 11.5953 -15.4162 REMARK 3 T TENSOR REMARK 3 T11: 0.3137 T22: 0.3275 REMARK 3 T33: 0.3216 T12: -0.0008 REMARK 3 T13: -0.0207 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.9403 L22: 0.3461 REMARK 3 L33: 0.7181 L12: 0.2090 REMARK 3 L13: -0.3082 L23: -0.5637 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: 0.0873 S13: 0.0781 REMARK 3 S21: -0.0706 S22: 0.1437 S23: 0.1046 REMARK 3 S31: 0.0393 S32: 0.0016 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1959 1.3144 -25.4274 REMARK 3 T TENSOR REMARK 3 T11: 0.3228 T22: 0.0933 REMARK 3 T33: 0.2329 T12: -0.0234 REMARK 3 T13: -0.0038 T23: -0.2660 REMARK 3 L TENSOR REMARK 3 L11: 0.1353 L22: 3.0188 REMARK 3 L33: 5.6447 L12: 0.5353 REMARK 3 L13: -0.2444 L23: -3.0606 REMARK 3 S TENSOR REMARK 3 S11: -0.3377 S12: 0.1993 S13: -0.5046 REMARK 3 S21: -0.3923 S22: -0.6565 S23: -0.3364 REMARK 3 S31: 0.3841 S32: 0.7224 S33: -1.4352 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4975 3.9217 -41.1428 REMARK 3 T TENSOR REMARK 3 T11: 0.4546 T22: 0.3483 REMARK 3 T33: 0.3775 T12: -0.0578 REMARK 3 T13: 0.1242 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.2520 L22: 0.0893 REMARK 3 L33: 0.0797 L12: 0.0004 REMARK 3 L13: 0.1759 L23: 0.0154 REMARK 3 S TENSOR REMARK 3 S11: 0.1328 S12: 0.1405 S13: 0.0899 REMARK 3 S21: -0.7574 S22: -0.0139 S23: -0.6356 REMARK 3 S31: 0.1063 S32: 0.2717 S33: 0.0003 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2162 2.1894 -23.2366 REMARK 3 T TENSOR REMARK 3 T11: 0.3321 T22: 0.3855 REMARK 3 T33: 0.3419 T12: 0.0210 REMARK 3 T13: 0.0107 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.7263 L22: 0.6393 REMARK 3 L33: 0.3061 L12: -0.4047 REMARK 3 L13: -0.0346 L23: -0.3362 REMARK 3 S TENSOR REMARK 3 S11: -0.0478 S12: -0.1919 S13: 0.1132 REMARK 3 S21: 0.0274 S22: 0.1065 S23: -0.2725 REMARK 3 S31: -0.0959 S32: 0.0458 S33: 0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5608 18.1885 -37.1518 REMARK 3 T TENSOR REMARK 3 T11: 0.4405 T22: 0.3412 REMARK 3 T33: 0.3007 T12: 0.0402 REMARK 3 T13: 0.0246 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 1.4213 L22: 1.3073 REMARK 3 L33: 1.1014 L12: -0.1491 REMARK 3 L13: -0.3993 L23: 0.2655 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: 0.2049 S13: 0.0738 REMARK 3 S21: -0.3302 S22: 0.0178 S23: 0.2091 REMARK 3 S31: -0.2464 S32: -0.1340 S33: -0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8527 19.8036 -28.2163 REMARK 3 T TENSOR REMARK 3 T11: 0.3577 T22: 0.2312 REMARK 3 T33: 0.3278 T12: -0.0324 REMARK 3 T13: 0.0526 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.2323 L22: 1.2546 REMARK 3 L33: 0.9305 L12: -0.5762 REMARK 3 L13: -0.4030 L23: 0.5383 REMARK 3 S TENSOR REMARK 3 S11: 0.0521 S12: -0.0482 S13: 0.2611 REMARK 3 S21: -0.1699 S22: 0.1074 S23: -0.1470 REMARK 3 S31: -0.1018 S32: 0.0786 S33: 0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3882 19.7233 -18.0029 REMARK 3 T TENSOR REMARK 3 T11: 0.3236 T22: 0.2807 REMARK 3 T33: 0.3535 T12: -0.0041 REMARK 3 T13: 0.0234 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 1.2721 L22: 0.2869 REMARK 3 L33: 1.2339 L12: -0.0895 REMARK 3 L13: -0.0977 L23: -0.6056 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: 0.0483 S13: 0.1774 REMARK 3 S21: -0.1606 S22: -0.1110 S23: -0.0581 REMARK 3 S31: -0.0235 S32: -0.0237 S33: -0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1686 19.7520 4.8128 REMARK 3 T TENSOR REMARK 3 T11: 0.2956 T22: 0.4968 REMARK 3 T33: 0.3300 T12: 0.0021 REMARK 3 T13: -0.0147 T23: -0.0958 REMARK 3 L TENSOR REMARK 3 L11: 0.9471 L22: 1.1284 REMARK 3 L33: -0.0803 L12: 0.6062 REMARK 3 L13: 0.1603 L23: -0.1198 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: -0.4901 S13: 0.2876 REMARK 3 S21: 0.2764 S22: 0.0549 S23: -0.1828 REMARK 3 S31: 0.0647 S32: 0.0238 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38662 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 80.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.76600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 6NVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.88150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.27100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.13600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.27100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.88150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.13600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 VAL A 159 REMARK 465 LEU A 160 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 14 CG CD OE1 NE2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ILE A 25 CG1 CG2 CD1 REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 LYS A 46 CE NZ REMARK 470 LYS A 206 CE NZ REMARK 470 ARG B 17 NE CZ NH1 NH2 REMARK 470 GLN B 18 CG CD OE1 NE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 ARG B 39 CZ NH1 NH2 REMARK 470 LYS B 46 CE NZ REMARK 470 GLU B 77 CD OE1 OE2 REMARK 470 HIS B 204 ND1 CD2 CE1 NE2 REMARK 470 LYS B 206 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 115 126.63 -36.80 REMARK 500 PRO A 157 98.51 -49.31 REMARK 500 ASP B 115 123.39 -38.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JBN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JBN B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOA A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOA B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOA GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOA SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOA GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOA SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JBN A 301 8 HET JBN B 301 8 HETNAM JBN 1,2-OXAZOLE-5-CARBOXAMIDE FORMUL 3 JBN 2(C4 H4 N2 O2) FORMUL 5 HOH *185(H2 O) HELIX 1 AA1 PHE A 9 GLN A 14 1 6 HELIX 2 AA2 SER A 19 ALA A 27 1 9 HELIX 3 AA3 ARG A 38 THR A 41 5 4 HELIX 4 AA4 LYS A 62 CYS A 74 1 13 HELIX 5 AA5 THR A 91 SER A 99 1 9 HELIX 6 AA6 ASP A 115 ALA A 123 1 9 HELIX 7 AA7 GLY A 141 ARG A 154 1 14 HELIX 8 AA8 PRO A 196 SER A 201 5 6 HELIX 9 AA9 ASP A 203 ARG A 223 1 21 HELIX 10 AB1 PRO A 224 LEU A 227 5 4 HELIX 11 AB2 PHE B 9 GLN B 14 1 6 HELIX 12 AB3 SER B 19 ALA B 27 1 9 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 ASP B 115 ALA B 123 1 9 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 196 SER B 201 1 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O GLU A 130 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N ILE B 3 O ASP B 31 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 1.83 CISPEP 2 ARG B 186 PRO B 187 0 3.29 SITE 1 AC1 8 THR A 84 PRO A 85 SER A 132 ILE A 133 SITE 2 AC1 8 GLY A 134 TYR A 136 LEU A 138 GLY A 140 SITE 1 AC2 8 THR B 84 PRO B 85 SER B 132 ILE B 133 SITE 2 AC2 8 GLY B 134 TYR B 136 LEU B 138 GLY B 140 CRYST1 73.763 80.272 84.542 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013557 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011828 0.00000