HEADER TRANSFERASE 12-FEB-19 6QOG TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 10 (2-AMINO-5- TITLE 3 BROMOBENZOTHIAZOLE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 15-MAY-24 6QOG 1 REMARK REVDAT 3 26-AUG-20 6QOG 1 JRNL REVDAT 2 05-AUG-20 6QOG 1 JRNL REVDAT 1 26-FEB-20 6QOG 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 73966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.7866 - 4.5833 1.00 2888 169 0.1768 0.2140 REMARK 3 2 4.5833 - 3.6381 1.00 2799 132 0.1514 0.1515 REMARK 3 3 3.6381 - 3.1783 1.00 2752 150 0.1765 0.1892 REMARK 3 4 3.1783 - 2.8877 1.00 2760 132 0.1875 0.2159 REMARK 3 5 2.8877 - 2.6808 1.00 2722 148 0.1979 0.2402 REMARK 3 6 2.6808 - 2.5227 1.00 2705 139 0.1864 0.1982 REMARK 3 7 2.5227 - 2.3964 1.00 2709 151 0.1789 0.1835 REMARK 3 8 2.3964 - 2.2921 1.00 2687 146 0.1777 0.1953 REMARK 3 9 2.2921 - 2.2038 1.00 2724 150 0.1767 0.2179 REMARK 3 10 2.2038 - 2.1278 1.00 2660 155 0.1814 0.1864 REMARK 3 11 2.1278 - 2.0612 1.00 2695 129 0.1814 0.2311 REMARK 3 12 2.0612 - 2.0023 1.00 2697 149 0.1752 0.2008 REMARK 3 13 2.0023 - 1.9496 1.00 2716 121 0.1724 0.1956 REMARK 3 14 1.9496 - 1.9020 1.00 2689 131 0.1705 0.2177 REMARK 3 15 1.9020 - 1.8588 1.00 2679 145 0.1817 0.2369 REMARK 3 16 1.8588 - 1.8192 1.00 2681 153 0.1796 0.1905 REMARK 3 17 1.8192 - 1.7828 1.00 2671 146 0.1855 0.2037 REMARK 3 18 1.7828 - 1.7492 1.00 2660 136 0.1840 0.2255 REMARK 3 19 1.7492 - 1.7180 1.00 2693 138 0.1905 0.2095 REMARK 3 20 1.7180 - 1.6888 1.00 2690 124 0.1981 0.2255 REMARK 3 21 1.6888 - 1.6616 1.00 2673 150 0.2003 0.2188 REMARK 3 22 1.6616 - 1.6360 1.00 2656 120 0.2054 0.2145 REMARK 3 23 1.6360 - 1.6120 1.00 2688 150 0.2198 0.2424 REMARK 3 24 1.6120 - 1.5893 1.00 2652 148 0.2252 0.2320 REMARK 3 25 1.5893 - 1.5678 1.00 2670 144 0.2377 0.2322 REMARK 3 26 1.5678 - 1.5474 1.00 2654 140 0.2502 0.2671 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3376 REMARK 3 ANGLE : 1.036 4628 REMARK 3 CHIRALITY : 0.041 527 REMARK 3 PLANARITY : 0.006 600 REMARK 3 DIHEDRAL : 11.652 1230 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2786 17.9071 -36.2968 REMARK 3 T TENSOR REMARK 3 T11: 0.2780 T22: 0.2668 REMARK 3 T33: 0.2013 T12: 0.0316 REMARK 3 T13: -0.0225 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.6763 L22: 0.8966 REMARK 3 L33: 1.3356 L12: 0.5655 REMARK 3 L13: -0.0144 L23: -0.0551 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: 0.1412 S13: 0.0511 REMARK 3 S21: -0.1410 S22: -0.1220 S23: 0.5012 REMARK 3 S31: -0.2390 S32: -0.3048 S33: -0.0006 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7795 19.6585 -30.6830 REMARK 3 T TENSOR REMARK 3 T11: 0.2560 T22: 0.1973 REMARK 3 T33: 0.2142 T12: -0.0164 REMARK 3 T13: 0.0249 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.9672 L22: 1.0986 REMARK 3 L33: 1.2972 L12: -0.4781 REMARK 3 L13: -0.5564 L23: 0.8835 REMARK 3 S TENSOR REMARK 3 S11: 0.0737 S12: 0.0503 S13: 0.1094 REMARK 3 S21: -0.1543 S22: 0.0394 S23: -0.0975 REMARK 3 S31: -0.0918 S32: 0.0606 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7523 19.4443 -18.1194 REMARK 3 T TENSOR REMARK 3 T11: 0.1859 T22: 0.1964 REMARK 3 T33: 0.2299 T12: -0.0054 REMARK 3 T13: -0.0016 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 0.9917 L22: 0.3406 REMARK 3 L33: 0.8379 L12: 0.0899 REMARK 3 L13: -0.2466 L23: -0.5636 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.0139 S13: 0.1410 REMARK 3 S21: -0.1272 S22: -0.0040 S23: -0.0829 REMARK 3 S31: -0.0292 S32: 0.0011 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3639 19.3929 4.6539 REMARK 3 T TENSOR REMARK 3 T11: 0.2220 T22: 0.3749 REMARK 3 T33: 0.2456 T12: 0.0257 REMARK 3 T13: -0.0387 T23: -0.0801 REMARK 3 L TENSOR REMARK 3 L11: 0.6766 L22: 1.0011 REMARK 3 L33: -0.2495 L12: 0.1338 REMARK 3 L13: -0.4967 L23: 0.1337 REMARK 3 S TENSOR REMARK 3 S11: -0.0835 S12: -0.3427 S13: 0.1769 REMARK 3 S21: 0.2096 S22: 0.1389 S23: -0.1577 REMARK 3 S31: 0.0853 S32: 0.0818 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9136 13.1008 -22.4091 REMARK 3 T TENSOR REMARK 3 T11: 0.2976 T22: 0.3037 REMARK 3 T33: 0.2337 T12: 0.0100 REMARK 3 T13: 0.0085 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.1360 L22: 0.1695 REMARK 3 L33: 0.5329 L12: 0.0332 REMARK 3 L13: 0.1433 L23: -0.2774 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: 0.1596 S13: -0.1486 REMARK 3 S21: -0.3666 S22: -0.1471 S23: 0.0509 REMARK 3 S31: 0.2068 S32: -0.1667 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.4364 14.5366 -19.5804 REMARK 3 T TENSOR REMARK 3 T11: 0.2446 T22: 0.3106 REMARK 3 T33: 0.2471 T12: 0.0022 REMARK 3 T13: -0.0534 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.6241 L22: 0.7715 REMARK 3 L33: 0.8325 L12: 0.5190 REMARK 3 L13: -0.0899 L23: -0.8294 REMARK 3 S TENSOR REMARK 3 S11: -0.0529 S12: 0.3196 S13: -0.2418 REMARK 3 S21: -0.1528 S22: 0.0658 S23: 0.2781 REMARK 3 S31: 0.0914 S32: -0.2067 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.1562 17.5456 -6.3446 REMARK 3 T TENSOR REMARK 3 T11: 0.1877 T22: 0.2177 REMARK 3 T33: 0.2418 T12: 0.0107 REMARK 3 T13: 0.0121 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.9147 L22: 0.2561 REMARK 3 L33: 1.1075 L12: -0.4986 REMARK 3 L13: -0.4468 L23: 0.1457 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: 0.0150 S13: 0.0396 REMARK 3 S21: -0.1632 S22: 0.0805 S23: -0.0308 REMARK 3 S31: -0.1067 S32: -0.0488 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1002 8.8736 -11.9647 REMARK 3 T TENSOR REMARK 3 T11: 0.1918 T22: 0.1924 REMARK 3 T33: 0.2325 T12: -0.0075 REMARK 3 T13: 0.0054 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.1714 L22: -0.1018 REMARK 3 L33: 1.2772 L12: -0.2641 REMARK 3 L13: -0.9148 L23: 0.0514 REMARK 3 S TENSOR REMARK 3 S11: -0.0281 S12: -0.0920 S13: -0.0509 REMARK 3 S21: -0.0649 S22: 0.0277 S23: -0.0402 REMARK 3 S31: 0.0441 S32: 0.0663 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2004 11.1917 -11.6034 REMARK 3 T TENSOR REMARK 3 T11: 0.2003 T22: 0.1905 REMARK 3 T33: 0.2206 T12: -0.0087 REMARK 3 T13: 0.0086 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.2727 L22: 0.0141 REMARK 3 L33: 0.4974 L12: -0.1846 REMARK 3 L13: -0.3070 L23: 0.0313 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: -0.0235 S13: -0.0312 REMARK 3 S21: -0.0043 S22: 0.0495 S23: -0.0275 REMARK 3 S31: 0.0199 S32: 0.0418 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4041 0.4052 -25.3265 REMARK 3 T TENSOR REMARK 3 T11: 0.3549 T22: -0.0422 REMARK 3 T33: 0.3970 T12: -0.0422 REMARK 3 T13: -0.1407 T23: -0.6078 REMARK 3 L TENSOR REMARK 3 L11: 0.3315 L22: 0.6603 REMARK 3 L33: 2.5279 L12: 0.0350 REMARK 3 L13: 0.3895 L23: -1.0772 REMARK 3 S TENSOR REMARK 3 S11: -0.1591 S12: 0.7227 S13: -0.5301 REMARK 3 S21: -0.7959 S22: -0.9040 S23: 0.3429 REMARK 3 S31: 0.4302 S32: 0.5908 S33: -0.7910 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5008 4.4205 -40.7108 REMARK 3 T TENSOR REMARK 3 T11: 0.2956 T22: 0.2387 REMARK 3 T33: 0.2227 T12: -0.0307 REMARK 3 T13: 0.0311 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.5224 L22: 0.3556 REMARK 3 L33: 0.2844 L12: -0.2548 REMARK 3 L13: 0.0706 L23: 0.1914 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: 0.0588 S13: 0.0105 REMARK 3 S21: -0.1671 S22: 0.0804 S23: -0.1504 REMARK 3 S31: -0.0887 S32: 0.2405 S33: -0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0834 2.0775 -24.2588 REMARK 3 T TENSOR REMARK 3 T11: 0.2566 T22: 0.2768 REMARK 3 T33: 0.2244 T12: 0.0320 REMARK 3 T13: -0.0346 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.7326 L22: 0.3475 REMARK 3 L33: 0.1249 L12: 0.4430 REMARK 3 L13: -0.2950 L23: 0.1523 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: -0.1870 S13: 0.0749 REMARK 3 S21: 0.0226 S22: 0.0747 S23: -0.2205 REMARK 3 S31: 0.0111 S32: 0.1876 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74045 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 86.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.82500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.87500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.35350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.25650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.35350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.87500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.25650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 LEU A 160 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 GLY B 228 REMARK 465 PHE B 229 REMARK 465 ASP B 230 REMARK 465 SER B 231 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 14 OE1 NE2 REMARK 470 ARG A 17 NE CZ NH1 NH2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 SER A 19 OG REMARK 470 LEU A 20 CG CD1 CD2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 ARG A 39 CZ NH1 NH2 REMARK 470 VAL A 44 CG1 CG2 REMARK 470 HIS A 45 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 46 CE NZ REMARK 470 GLU A 77 CD OE1 OE2 REMARK 470 HIS A 204 ND1 CD2 CE1 NE2 REMARK 470 LYS A 206 CE NZ REMARK 470 GLU B 11 OE1 OE2 REMARK 470 GLN B 14 CD OE1 NE2 REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 18 CG CD OE1 NE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 -133.90 54.13 REMARK 500 TYR A 111 -134.91 57.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JA8 A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOG A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOG B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOG GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOG SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOG GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOG SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JA8 A 301 11 HETNAM JA8 5-BROMANYL-1,3-BENZOTHIAZOL-2-AMINE FORMUL 3 JA8 C7 H5 BR N2 S FORMUL 4 HOH *318(H2 O) HELIX 1 AA1 PHE A 9 ARG A 17 5 9 HELIX 2 AA2 GLN A 18 ALA A 27 1 10 HELIX 3 AA3 ARG A 38 THR A 41 5 4 HELIX 4 AA4 LYS A 62 CYS A 74 1 13 HELIX 5 AA5 THR A 91 SER A 99 1 9 HELIX 6 AA6 GLN A 116 ALA A 123 1 8 HELIX 7 AA7 GLY A 141 ARG A 154 1 14 HELIX 8 AA8 PRO A 196 SER A 201 5 6 HELIX 9 AA9 ASP A 203 ARG A 223 1 21 HELIX 10 AB1 PRO A 224 GLY A 228 5 5 HELIX 11 AB2 PHE B 9 TYR B 12 5 4 HELIX 12 AB3 LEU B 13 LEU B 20 1 8 HELIX 13 AB4 PRO B 21 ALA B 27 1 7 HELIX 14 AB5 ARG B 38 THR B 41 5 4 HELIX 15 AB6 LYS B 62 CYS B 74 1 13 HELIX 16 AB7 THR B 91 SER B 99 1 9 HELIX 17 AB8 ASP B 115 ALA B 123 1 9 HELIX 18 AB9 GLY B 141 ARG B 154 1 14 HELIX 19 AC1 PRO B 196 SER B 201 5 6 HELIX 20 AC2 ASP B 203 ARG B 223 1 21 HELIX 21 AC3 PRO B 224 LEU B 227 5 4 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O GLU A 130 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 3.86 CISPEP 2 ARG B 186 PRO B 187 0 2.77 SITE 1 AC1 10 PRO A 83 PRO A 85 GLY A 109 TYR A 111 SITE 2 AC1 10 TYR A 136 LEU A 138 ASN A 139 GLY A 140 SITE 3 AC1 10 GLY A 141 HOH A 452 CRYST1 73.750 78.513 86.707 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013559 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011533 0.00000