HEADER TRANSFERASE 12-FEB-19 6QOJ TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 13 (4- TITLE 3 HYDROXYQUINAZOLINE) CAVEAT 6QOJ JBH A 301 HAS WRONG CHIRALITY AT ATOM C02 JBH B 301 HAS CAVEAT 2 6QOJ WRONG CHIRALITY AT ATOM C02 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 GENE: TRMD, MAB_3226C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 15-MAY-24 6QOJ 1 REMARK REVDAT 3 26-AUG-20 6QOJ 1 JRNL REVDAT 2 05-AUG-20 6QOJ 1 JRNL REVDAT 1 26-FEB-20 6QOJ 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7670 - 4.7542 1.00 2565 182 0.1579 0.1946 REMARK 3 2 4.7542 - 3.7741 1.00 2497 132 0.1486 0.1989 REMARK 3 3 3.7741 - 3.2972 1.00 2441 165 0.1980 0.2350 REMARK 3 4 3.2972 - 2.9958 1.00 2433 153 0.2234 0.2638 REMARK 3 5 2.9958 - 2.7811 1.00 2471 109 0.2493 0.2933 REMARK 3 6 2.7811 - 2.6171 1.00 2447 123 0.2538 0.3028 REMARK 3 7 2.6171 - 2.4861 1.00 2431 112 0.2344 0.2899 REMARK 3 8 2.4861 - 2.3779 1.00 2421 125 0.2363 0.2487 REMARK 3 9 2.3779 - 2.2863 1.00 2430 128 0.2419 0.2974 REMARK 3 10 2.2863 - 2.2074 1.00 2423 141 0.2466 0.3062 REMARK 3 11 2.2074 - 2.1384 1.00 2392 142 0.2527 0.3169 REMARK 3 12 2.1384 - 2.0773 1.00 2412 119 0.2806 0.3552 REMARK 3 13 2.0773 - 2.0226 1.00 2412 120 0.3078 0.3851 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3375 REMARK 3 ANGLE : 1.051 4620 REMARK 3 CHIRALITY : 0.040 523 REMARK 3 PLANARITY : 0.005 599 REMARK 3 DIHEDRAL : 13.393 1213 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2812 -18.3664 -36.0493 REMARK 3 T TENSOR REMARK 3 T11: 0.5025 T22: 0.4449 REMARK 3 T33: 0.4139 T12: 0.0445 REMARK 3 T13: -0.0793 T23: -0.1068 REMARK 3 L TENSOR REMARK 3 L11: 4.6982 L22: 4.6302 REMARK 3 L33: 4.1085 L12: -2.6996 REMARK 3 L13: 2.7446 L23: -2.6314 REMARK 3 S TENSOR REMARK 3 S11: 0.4094 S12: 0.6495 S13: -0.4950 REMARK 3 S21: -0.6084 S22: -0.0395 S23: -0.1169 REMARK 3 S31: 0.6007 S32: 0.2580 S33: -0.4189 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2807 -20.0361 -30.3269 REMARK 3 T TENSOR REMARK 3 T11: 0.5078 T22: 0.3878 REMARK 3 T33: 0.6947 T12: -0.0381 REMARK 3 T13: -0.1880 T23: 0.1074 REMARK 3 L TENSOR REMARK 3 L11: 3.2567 L22: 2.5911 REMARK 3 L33: 4.9795 L12: -0.4717 REMARK 3 L13: 0.4102 L23: -1.3742 REMARK 3 S TENSOR REMARK 3 S11: 0.1218 S12: 0.0431 S13: -0.6364 REMARK 3 S21: -0.4404 S22: 0.2312 S23: 0.6268 REMARK 3 S31: 0.4855 S32: -0.4399 S33: -0.3384 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4476 -20.1571 -18.4921 REMARK 3 T TENSOR REMARK 3 T11: 0.3433 T22: 0.2996 REMARK 3 T33: 0.4943 T12: 0.0211 REMARK 3 T13: -0.0559 T23: 0.0871 REMARK 3 L TENSOR REMARK 3 L11: 2.8271 L22: 1.1000 REMARK 3 L33: 3.9328 L12: 0.0980 REMARK 3 L13: 0.7223 L23: 1.3112 REMARK 3 S TENSOR REMARK 3 S11: 0.2487 S12: -0.2983 S13: -0.6504 REMARK 3 S21: 0.0563 S22: 0.3342 S23: 0.0188 REMARK 3 S31: 0.2832 S32: -0.2493 S33: -0.5361 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3575 -19.0669 5.0806 REMARK 3 T TENSOR REMARK 3 T11: 0.4159 T22: 0.9570 REMARK 3 T33: 0.4589 T12: 0.0096 REMARK 3 T13: 0.0347 T23: 0.2260 REMARK 3 L TENSOR REMARK 3 L11: 2.4462 L22: 0.4768 REMARK 3 L33: 0.5766 L12: 0.4627 REMARK 3 L13: -0.0622 L23: 0.5740 REMARK 3 S TENSOR REMARK 3 S11: -0.1121 S12: -1.6827 S13: -0.2544 REMARK 3 S21: 0.4311 S22: 0.2337 S23: 0.1701 REMARK 3 S31: -0.0377 S32: -0.0704 S33: -0.1816 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6455 -14.2690 -23.7604 REMARK 3 T TENSOR REMARK 3 T11: 0.4489 T22: 0.6588 REMARK 3 T33: 0.4932 T12: 0.0124 REMARK 3 T13: 0.0630 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 4.3859 L22: 1.5612 REMARK 3 L33: 7.8614 L12: -1.4518 REMARK 3 L13: 3.3109 L23: -1.4804 REMARK 3 S TENSOR REMARK 3 S11: 0.4778 S12: 1.0044 S13: -0.2050 REMARK 3 S21: -0.5959 S22: 0.2240 S23: 0.2260 REMARK 3 S31: 0.1180 S32: 0.6928 S33: -0.5325 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5562 -20.2560 -13.9058 REMARK 3 T TENSOR REMARK 3 T11: 0.3817 T22: 0.4476 REMARK 3 T33: 0.3937 T12: 0.0486 REMARK 3 T13: -0.0221 T23: -0.1097 REMARK 3 L TENSOR REMARK 3 L11: 5.7633 L22: 1.7713 REMARK 3 L33: 5.7225 L12: -1.6563 REMARK 3 L13: 3.0363 L23: -1.4943 REMARK 3 S TENSOR REMARK 3 S11: 0.4083 S12: 0.3829 S13: -0.8061 REMARK 3 S21: -0.5516 S22: 0.0870 S23: 0.1231 REMARK 3 S31: 0.8562 S32: 0.4803 S33: -0.3618 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5028 -11.2260 -8.8936 REMARK 3 T TENSOR REMARK 3 T11: 0.3401 T22: 0.4738 REMARK 3 T33: 0.4371 T12: -0.0270 REMARK 3 T13: 0.0377 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 1.3139 L22: 3.5808 REMARK 3 L33: 2.3995 L12: -0.4280 REMARK 3 L13: 0.7870 L23: -0.5186 REMARK 3 S TENSOR REMARK 3 S11: -0.0718 S12: -0.3650 S13: 0.6996 REMARK 3 S21: 0.3448 S22: 0.0260 S23: -0.7980 REMARK 3 S31: -0.3064 S32: 0.6310 S33: -0.0222 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0246 -9.0385 -11.9889 REMARK 3 T TENSOR REMARK 3 T11: 0.3728 T22: 0.2893 REMARK 3 T33: 0.2698 T12: 0.0040 REMARK 3 T13: 0.0655 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 6.8903 L22: 2.3341 REMARK 3 L33: 5.7647 L12: -2.0960 REMARK 3 L13: 2.8104 L23: -1.2659 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: -0.3245 S13: 0.1784 REMARK 3 S21: 0.1261 S22: 0.2294 S23: 0.0299 REMARK 3 S31: -0.5376 S32: -0.2704 S33: -0.0910 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2526 -9.5777 -13.9022 REMARK 3 T TENSOR REMARK 3 T11: 0.3573 T22: 0.3574 REMARK 3 T33: 0.3186 T12: 0.0255 REMARK 3 T13: 0.0975 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 5.5387 L22: 1.8616 REMARK 3 L33: 2.3664 L12: -0.5709 REMARK 3 L13: 2.9838 L23: -0.2988 REMARK 3 S TENSOR REMARK 3 S11: -0.1355 S12: -0.1183 S13: 0.1556 REMARK 3 S21: -0.0777 S22: 0.2979 S23: 0.1070 REMARK 3 S31: -0.3266 S32: -0.0878 S33: -0.1401 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 182 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0381 -4.4341 -40.5558 REMARK 3 T TENSOR REMARK 3 T11: 0.5874 T22: 0.6501 REMARK 3 T33: 0.6872 T12: -0.0912 REMARK 3 T13: -0.2247 T23: 0.2162 REMARK 3 L TENSOR REMARK 3 L11: 5.4044 L22: 5.9259 REMARK 3 L33: 4.1469 L12: -1.5972 REMARK 3 L13: 0.0863 L23: 1.3621 REMARK 3 S TENSOR REMARK 3 S11: 0.4371 S12: 0.8586 S13: -0.3518 REMARK 3 S21: -1.2037 S22: 0.0893 S23: 1.6316 REMARK 3 S31: 0.2213 S32: -0.6197 S33: -0.5687 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2589 -2.5621 -23.5058 REMARK 3 T TENSOR REMARK 3 T11: 0.5559 T22: 0.6524 REMARK 3 T33: 0.6377 T12: 0.1337 REMARK 3 T13: 0.0869 T23: 0.2038 REMARK 3 L TENSOR REMARK 3 L11: 4.7447 L22: 5.9592 REMARK 3 L33: 4.1886 L12: -3.9534 REMARK 3 L13: 3.6003 L23: -4.1195 REMARK 3 S TENSOR REMARK 3 S11: -0.0453 S12: -0.3329 S13: -0.1942 REMARK 3 S21: 0.1706 S22: 0.1499 S23: 0.7344 REMARK 3 S31: -0.1834 S32: -0.0842 S33: -0.0886 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33602 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 84.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.97400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.00500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.14200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.24900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.14200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.00500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.24900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PHE B 229 REMARK 465 ASP B 230 REMARK 465 SER B 231 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 17 NE CZ NH1 NH2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 ASP A 31 CG OD1 OD2 REMARK 470 ARG A 39 CD NE CZ NH1 NH2 REMARK 470 VAL A 44 CG1 CG2 REMARK 470 LYS A 46 CD CE NZ REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 VAL A 159 CG1 CG2 REMARK 470 LEU A 160 CG CD1 CD2 REMARK 470 HIS A 204 ND1 CD2 CE1 NE2 REMARK 470 LYS A 206 CE NZ REMARK 470 GLN B 18 CD OE1 NE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 ARG B 39 CD NE CZ NH1 NH2 REMARK 470 LYS B 46 CE NZ REMARK 470 SER B 177 OG REMARK 470 ARG B 216 CG CD NE CZ NH1 NH2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JBH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JBH B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOJ A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOJ B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOJ GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOJ SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOJ GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOJ SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JBH A 301 11 HET JBH B 301 11 HETNAM JBH 3,4-DIHYDROQUINAZOLIN-4-OL FORMUL 3 JBH 2(C8 H8 N2 O) FORMUL 5 HOH *67(H2 O) HELIX 1 AA1 PHE A 9 GLN A 14 1 6 HELIX 2 AA2 SER A 19 ALA A 27 1 9 HELIX 3 AA3 ARG A 38 THR A 41 5 4 HELIX 4 AA4 LYS A 62 CYS A 74 1 13 HELIX 5 AA5 THR A 91 SER A 99 1 9 HELIX 6 AA6 ASP A 115 ALA A 123 1 9 HELIX 7 AA7 GLY A 141 ARG A 154 1 14 HELIX 8 AA8 PRO A 196 LEU A 200 5 5 HELIX 9 AA9 ASP A 203 ARG A 223 1 21 HELIX 10 AB1 PRO A 224 GLY A 228 5 5 HELIX 11 AB2 PHE B 9 GLN B 14 1 6 HELIX 12 AB3 SER B 19 ALA B 27 1 9 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 ASP B 115 ALA B 123 1 9 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 196 SER B 201 5 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 LEU B 227 5 4 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O GLU A 130 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 1.27 CISPEP 2 ARG B 186 PRO B 187 0 0.29 SITE 1 AC1 9 PRO A 83 THR A 84 SER A 132 ILE A 133 SITE 2 AC1 9 GLY A 134 TYR A 136 LEU A 138 GLY A 140 SITE 3 AC1 9 GLY A 141 SITE 1 AC2 9 PRO B 83 THR B 84 SER B 132 ILE B 133 SITE 2 AC2 9 GLY B 134 TYR B 136 LEU B 138 GLY B 140 SITE 3 AC2 9 GLY B 141 CRYST1 74.010 80.498 84.284 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013512 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011865 0.00000