HEADER TRANSFERASE 12-FEB-19 6QON TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 17 (2H-1,3- TITLE 3 BENZOXAZINE-2,4(3H)-DIONE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 15-MAY-24 6QON 1 REMARK REVDAT 3 26-AUG-20 6QON 1 JRNL REVDAT 2 05-AUG-20 6QON 1 JRNL REVDAT 1 26-FEB-20 6QON 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 47008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.3589 - 4.6532 1.00 2765 189 0.1653 0.2078 REMARK 3 2 4.6532 - 3.6936 1.00 2655 190 0.1369 0.1759 REMARK 3 3 3.6936 - 3.2268 1.00 2635 153 0.1697 0.1853 REMARK 3 4 3.2268 - 2.9318 1.00 2661 134 0.1862 0.2228 REMARK 3 5 2.9318 - 2.7216 1.00 2607 146 0.1935 0.2208 REMARK 3 6 2.7216 - 2.5612 1.00 2617 143 0.1913 0.2296 REMARK 3 7 2.5612 - 2.4329 1.00 2601 160 0.1787 0.2064 REMARK 3 8 2.4329 - 2.3270 1.00 2601 147 0.1801 0.2204 REMARK 3 9 2.3270 - 2.2374 1.00 2610 138 0.1746 0.1877 REMARK 3 10 2.2374 - 2.1602 1.00 2613 147 0.1721 0.2015 REMARK 3 11 2.1602 - 2.0926 1.00 2598 127 0.1811 0.2332 REMARK 3 12 2.0926 - 2.0328 1.00 2611 124 0.1894 0.2075 REMARK 3 13 2.0328 - 1.9793 1.00 2601 127 0.1923 0.2429 REMARK 3 14 1.9793 - 1.9310 1.00 2597 117 0.1953 0.2303 REMARK 3 15 1.9310 - 1.8871 1.00 2635 119 0.2122 0.2490 REMARK 3 16 1.8871 - 1.8470 1.00 2604 119 0.2367 0.2721 REMARK 3 17 1.8470 - 1.8100 1.00 2597 120 0.2960 0.3680 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3451 REMARK 3 ANGLE : 1.009 4735 REMARK 3 CHIRALITY : 0.044 534 REMARK 3 PLANARITY : 0.005 618 REMARK 3 DIHEDRAL : 11.676 1268 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.5988 -13.5109 22.2444 REMARK 3 T TENSOR REMARK 3 T11: 0.2832 T22: 0.4026 REMARK 3 T33: 0.2669 T12: -0.0017 REMARK 3 T13: 0.0250 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.1626 L22: 0.1339 REMARK 3 L33: 0.5374 L12: -0.1228 REMARK 3 L13: -0.0999 L23: -0.1388 REMARK 3 S TENSOR REMARK 3 S11: 0.0633 S12: -0.6693 S13: 0.0345 REMARK 3 S21: 0.2087 S22: -0.0632 S23: 0.0877 REMARK 3 S31: -0.0944 S32: -0.1521 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2344 -15.9450 12.9786 REMARK 3 T TENSOR REMARK 3 T11: 0.2123 T22: 0.2373 REMARK 3 T33: 0.2218 T12: -0.0015 REMARK 3 T13: 0.0162 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.5592 L22: 0.7252 REMARK 3 L33: 1.1495 L12: 0.5497 REMARK 3 L13: 0.6497 L23: 0.1138 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: -0.1398 S13: 0.0726 REMARK 3 S21: 0.1433 S22: 0.0460 S23: 0.0623 REMARK 3 S31: 0.0509 S32: -0.1968 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7001 -9.0259 8.7864 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.1856 REMARK 3 T33: 0.2385 T12: 0.0032 REMARK 3 T13: 0.0006 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.2943 L22: 0.0586 REMARK 3 L33: 1.3795 L12: 0.4180 REMARK 3 L13: 1.0462 L23: 0.1435 REMARK 3 S TENSOR REMARK 3 S11: -0.0884 S12: 0.1200 S13: 0.1283 REMARK 3 S21: 0.0358 S22: 0.0439 S23: -0.0878 REMARK 3 S31: -0.1167 S32: 0.1005 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4856 -9.0288 20.5138 REMARK 3 T TENSOR REMARK 3 T11: 0.2458 T22: 0.2602 REMARK 3 T33: 0.2354 T12: 0.0106 REMARK 3 T13: -0.0179 T23: -0.0582 REMARK 3 L TENSOR REMARK 3 L11: 1.1530 L22: 0.9068 REMARK 3 L33: 0.7958 L12: 0.1228 REMARK 3 L13: 0.2695 L23: -0.8213 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: -0.2638 S13: 0.1101 REMARK 3 S21: 0.1729 S22: -0.0685 S23: 0.0078 REMARK 3 S31: -0.0705 S32: 0.0132 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6593 -3.1616 31.6757 REMARK 3 T TENSOR REMARK 3 T11: 0.2407 T22: 0.2271 REMARK 3 T33: 0.2065 T12: 0.0007 REMARK 3 T13: -0.0008 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.7951 L22: 0.8060 REMARK 3 L33: 0.2879 L12: 0.0509 REMARK 3 L13: 0.1667 L23: 0.1668 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: 0.0531 S13: -0.0829 REMARK 3 S21: 0.1022 S22: 0.1057 S23: -0.3095 REMARK 3 S31: 0.0449 S32: 0.2051 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5184 -22.0778 32.3150 REMARK 3 T TENSOR REMARK 3 T11: 0.3124 T22: 0.3424 REMARK 3 T33: 0.3583 T12: -0.0183 REMARK 3 T13: -0.0136 T23: -0.0500 REMARK 3 L TENSOR REMARK 3 L11: 0.0033 L22: 0.1918 REMARK 3 L33: 0.3296 L12: 0.0138 REMARK 3 L13: 0.0093 L23: -0.1703 REMARK 3 S TENSOR REMARK 3 S11: 0.0988 S12: 0.0185 S13: -0.1627 REMARK 3 S21: 0.1003 S22: -0.2092 S23: 0.5510 REMARK 3 S31: 0.2130 S32: -0.4829 S33: 0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9442 -31.8000 24.6646 REMARK 3 T TENSOR REMARK 3 T11: 0.5923 T22: 0.5593 REMARK 3 T33: 0.7053 T12: -0.0449 REMARK 3 T13: -0.0459 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.0456 L22: 0.0454 REMARK 3 L33: 0.1090 L12: 0.0137 REMARK 3 L13: -0.0212 L23: 0.0593 REMARK 3 S TENSOR REMARK 3 S11: 0.5154 S12: 0.3884 S13: 0.1356 REMARK 3 S21: 0.2336 S22: -0.2345 S23: 1.1455 REMARK 3 S31: -0.0075 S32: -0.8703 S33: 0.0008 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 30 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9359 -18.0068 43.2856 REMARK 3 T TENSOR REMARK 3 T11: 0.4119 T22: 0.3923 REMARK 3 T33: 0.2923 T12: -0.0544 REMARK 3 T13: 0.0792 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.5618 L22: 0.0897 REMARK 3 L33: 0.2568 L12: 0.0887 REMARK 3 L13: -0.1571 L23: -0.1573 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: -0.3473 S13: -0.0619 REMARK 3 S21: 0.5973 S22: -0.1179 S23: 0.6298 REMARK 3 S31: 0.3549 S32: -0.4498 S33: -0.0181 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5930 -1.9967 39.9167 REMARK 3 T TENSOR REMARK 3 T11: 0.2976 T22: 0.2371 REMARK 3 T33: 0.2394 T12: 0.0070 REMARK 3 T13: -0.0638 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.1039 L22: 0.0862 REMARK 3 L33: 0.0416 L12: 0.0999 REMARK 3 L13: 0.0382 L23: 0.0559 REMARK 3 S TENSOR REMARK 3 S11: -0.0964 S12: -0.0182 S13: 0.1894 REMARK 3 S21: 0.1117 S22: 0.1200 S23: 0.2427 REMARK 3 S31: 0.1113 S32: -0.0772 S33: -0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6984 -20.0491 29.8965 REMARK 3 T TENSOR REMARK 3 T11: 0.2848 T22: 0.2022 REMARK 3 T33: 0.2327 T12: 0.0117 REMARK 3 T13: -0.0141 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.8623 L22: 0.5559 REMARK 3 L33: 1.0224 L12: 0.3242 REMARK 3 L13: 0.5012 L23: 0.7605 REMARK 3 S TENSOR REMARK 3 S11: 0.0638 S12: -0.0205 S13: -0.0900 REMARK 3 S21: 0.1266 S22: 0.0433 S23: -0.0806 REMARK 3 S31: 0.1149 S32: 0.0170 S33: -0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1245 -18.3045 33.0788 REMARK 3 T TENSOR REMARK 3 T11: 0.2697 T22: 0.2522 REMARK 3 T33: 0.2746 T12: 0.0295 REMARK 3 T13: -0.0298 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.1506 L22: 0.3514 REMARK 3 L33: 0.1405 L12: 0.0672 REMARK 3 L13: -0.0130 L23: 0.2192 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: 0.0023 S13: -0.0679 REMARK 3 S21: 0.2314 S22: 0.1427 S23: -0.0165 REMARK 3 S31: -0.0057 S32: 0.1241 S33: 0.0002 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1633 -20.3003 12.6615 REMARK 3 T TENSOR REMARK 3 T11: 0.2008 T22: 0.2053 REMARK 3 T33: 0.2278 T12: -0.0204 REMARK 3 T13: 0.0259 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.1012 L22: 0.5394 REMARK 3 L33: 0.5961 L12: -0.3907 REMARK 3 L13: 0.5506 L23: 0.0035 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.0533 S13: -0.0906 REMARK 3 S21: 0.0420 S22: 0.0619 S23: -0.0287 REMARK 3 S31: -0.0007 S32: 0.0344 S33: 0.0002 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 192 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3074 -19.0034 -5.5389 REMARK 3 T TENSOR REMARK 3 T11: 0.1987 T22: 0.4405 REMARK 3 T33: 0.2584 T12: -0.0298 REMARK 3 T13: 0.0744 T23: -0.1145 REMARK 3 L TENSOR REMARK 3 L11: 0.5472 L22: 0.8615 REMARK 3 L33: 0.2234 L12: -0.3939 REMARK 3 L13: 0.4782 L23: -0.5417 REMARK 3 S TENSOR REMARK 3 S11: -0.1785 S12: 0.3540 S13: -0.1340 REMARK 3 S21: -0.3466 S22: 0.1723 S23: -0.1760 REMARK 3 S31: -0.2520 S32: 0.0168 S33: -0.0066 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QON COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47076 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 86.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.89900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.01000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.41800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.45950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.41800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.01000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.45950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 GLU A 180 OE1 OE2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 ARG B 17 NE CZ NH1 NH2 REMARK 470 LEU B 20 CG CD1 CD2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 VAL B 44 CG1 CG2 REMARK 470 LYS B 46 CE NZ REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 LEU B 160 CG CD1 CD2 REMARK 470 LEU B 178 CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 84 C PRO A 85 N 0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 84 O - C - N ANGL. DEV. = 14.5 DEGREES REMARK 500 THR B 84 O - C - N ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 84 133.39 -176.96 REMARK 500 ASP A 115 126.70 -38.89 REMARK 500 SER B 19 -132.87 38.27 REMARK 500 THR B 84 136.33 -176.09 REMARK 500 TYR B 111 -131.91 52.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J9W A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J9W B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QON A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QON B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QON GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QON SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QON GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QON SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET J9W A 301 12 HET J9W B 301 12 HET SO4 B 302 5 HETNAM J9W 1,3-BENZOXAZINE-2,4-DIONE HETNAM SO4 SULFATE ION FORMUL 3 J9W 2(C8 H5 N O3) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *232(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 GLN A 18 1 6 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 ASP A 115 ALA A 123 1 9 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 ARG B 17 5 9 HELIX 13 AB4 GLN B 18 ALA B 27 1 10 HELIX 14 AB5 ARG B 38 THR B 41 5 4 HELIX 15 AB6 LYS B 62 CYS B 74 1 13 HELIX 16 AB7 THR B 91 SER B 99 1 9 HELIX 17 AB8 GLN B 116 ALA B 123 1 8 HELIX 18 AB9 GLY B 141 ARG B 154 1 14 HELIX 19 AC1 PRO B 196 SER B 201 5 6 HELIX 20 AC2 ASP B 203 ARG B 223 1 21 HELIX 21 AC3 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N ILE A 3 O ASP A 31 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 127 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O SER B 132 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 3.34 CISPEP 2 ARG B 186 PRO B 187 0 1.18 SITE 1 AC1 13 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 13 TYR A 111 SER A 132 ILE A 133 TYR A 136 SITE 3 AC1 13 VAL A 137 LEU A 138 GLY A 140 GLY A 141 SITE 4 AC1 13 HOH A 401 SITE 1 AC2 13 PRO B 83 THR B 84 PRO B 85 VAL B 131 SITE 2 AC2 13 SER B 132 ILE B 133 TYR B 136 VAL B 137 SITE 3 AC2 13 LEU B 138 GLY B 140 GLY B 141 ALA B 144 SITE 4 AC2 13 HOH B 402 SITE 1 AC3 3 ARG B 127 ARG B 129 HOH B 436 CRYST1 74.020 78.919 86.836 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011516 0.00000