HEADER TRANSFERASE 12-FEB-19 6QOQ TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 20 (6- TITLE 3 AMINOBENZOTHIAZOLE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 3 26-AUG-20 6QOQ 1 JRNL REVDAT 2 05-AUG-20 6QOQ 1 JRNL REVDAT 1 26-FEB-20 6QOQ 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 59495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.2762 - 4.6685 1.00 2750 159 0.1664 0.1799 REMARK 3 2 4.6685 - 3.7058 1.00 2618 155 0.1392 0.1515 REMARK 3 3 3.7058 - 3.2374 1.00 2615 140 0.1638 0.1972 REMARK 3 4 3.2374 - 2.9414 1.00 2592 139 0.1821 0.1797 REMARK 3 5 2.9414 - 2.7306 1.00 2588 136 0.1912 0.2250 REMARK 3 6 2.7306 - 2.5696 1.00 2588 135 0.1865 0.1897 REMARK 3 7 2.5696 - 2.4409 1.00 2539 163 0.1798 0.1969 REMARK 3 8 2.4409 - 2.3346 1.00 2542 143 0.1766 0.1976 REMARK 3 9 2.3346 - 2.2448 1.00 2542 146 0.1772 0.2066 REMARK 3 10 2.2448 - 2.1673 1.00 2533 158 0.1751 0.2217 REMARK 3 11 2.1673 - 2.0995 1.00 2577 131 0.1774 0.2291 REMARK 3 12 2.0995 - 2.0395 1.00 2560 113 0.1763 0.2189 REMARK 3 13 2.0395 - 1.9858 1.00 2577 137 0.1763 0.2204 REMARK 3 14 1.9858 - 1.9374 1.00 2557 113 0.1688 0.2157 REMARK 3 15 1.9374 - 1.8933 1.00 2519 129 0.1746 0.1968 REMARK 3 16 1.8933 - 1.8530 1.00 2545 155 0.1875 0.2267 REMARK 3 17 1.8530 - 1.8160 1.00 2504 150 0.1914 0.2332 REMARK 3 18 1.8160 - 1.7817 1.00 2546 137 0.2005 0.2149 REMARK 3 19 1.7817 - 1.7499 1.00 2533 133 0.2126 0.2604 REMARK 3 20 1.7499 - 1.7202 1.00 2551 112 0.2180 0.2156 REMARK 3 21 1.7202 - 1.6925 1.00 2561 115 0.2325 0.2689 REMARK 3 22 1.6925 - 1.6664 1.00 2523 136 0.2552 0.2899 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3400 REMARK 3 ANGLE : 1.007 4661 REMARK 3 CHIRALITY : 0.041 525 REMARK 3 PLANARITY : 0.006 606 REMARK 3 DIHEDRAL : 11.745 1240 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.6994 -9.7904 25.0908 REMARK 3 T TENSOR REMARK 3 T11: 0.3550 T22: 0.3671 REMARK 3 T33: 0.3206 T12: 0.0150 REMARK 3 T13: 0.0131 T23: -0.0688 REMARK 3 L TENSOR REMARK 3 L11: 0.0623 L22: 0.1572 REMARK 3 L33: 0.2774 L12: -0.0121 REMARK 3 L13: -0.0557 L23: -0.0519 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: -0.4616 S13: 0.2564 REMARK 3 S21: 0.3943 S22: -0.0332 S23: 0.1473 REMARK 3 S31: -0.1467 S32: -0.1941 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.4938 -20.1080 15.1188 REMARK 3 T TENSOR REMARK 3 T11: 0.2615 T22: 0.2835 REMARK 3 T33: 0.2514 T12: -0.0359 REMARK 3 T13: 0.0002 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 1.0599 L22: 0.4679 REMARK 3 L33: 0.4911 L12: -0.3178 REMARK 3 L13: -0.0934 L23: -0.4360 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: -0.2524 S13: -0.0371 REMARK 3 S21: -0.0120 S22: 0.0607 S23: 0.1620 REMARK 3 S31: 0.0263 S32: -0.2576 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.4678 -17.4322 6.4559 REMARK 3 T TENSOR REMARK 3 T11: 0.1910 T22: 0.2110 REMARK 3 T33: 0.2449 T12: -0.0053 REMARK 3 T13: -0.0127 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.9996 L22: 0.3048 REMARK 3 L33: 1.2606 L12: 0.5372 REMARK 3 L13: 0.3251 L23: 0.1920 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: 0.0284 S13: -0.0523 REMARK 3 S21: 0.1190 S22: 0.0742 S23: -0.0309 REMARK 3 S31: 0.1030 S32: -0.0877 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4450 -8.9423 12.1994 REMARK 3 T TENSOR REMARK 3 T11: 0.1992 T22: 0.1826 REMARK 3 T33: 0.2273 T12: 0.0072 REMARK 3 T13: -0.0105 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.5172 L22: -0.0192 REMARK 3 L33: 1.6001 L12: 0.1491 REMARK 3 L13: 0.6026 L23: 0.1264 REMARK 3 S TENSOR REMARK 3 S11: -0.0567 S12: 0.0660 S13: 0.0269 REMARK 3 S21: 0.0336 S22: 0.0440 S23: -0.0235 REMARK 3 S31: -0.0784 S32: 0.1023 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3839 -11.2237 11.5995 REMARK 3 T TENSOR REMARK 3 T11: 0.2041 T22: 0.1803 REMARK 3 T33: 0.2141 T12: 0.0056 REMARK 3 T13: -0.0090 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.1615 L22: -0.0209 REMARK 3 L33: 0.4126 L12: 0.1987 REMARK 3 L13: 0.3492 L23: 0.5253 REMARK 3 S TENSOR REMARK 3 S11: -0.0502 S12: -0.0105 S13: 0.1059 REMARK 3 S21: 0.0550 S22: 0.0510 S23: -0.0477 REMARK 3 S31: -0.0197 S32: 0.0266 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0865 -0.5754 24.9348 REMARK 3 T TENSOR REMARK 3 T11: 0.4005 T22: 0.2731 REMARK 3 T33: 0.3339 T12: 0.0109 REMARK 3 T13: 0.0626 T23: -0.1036 REMARK 3 L TENSOR REMARK 3 L11: 0.5995 L22: 0.4355 REMARK 3 L33: 1.0186 L12: -0.4071 REMARK 3 L13: 0.7092 L23: -0.5778 REMARK 3 S TENSOR REMARK 3 S11: -0.2214 S12: -0.3133 S13: 0.5818 REMARK 3 S21: 0.4518 S22: -0.0068 S23: 0.2028 REMARK 3 S31: -0.1784 S32: -0.0870 S33: -0.3763 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4102 -4.4567 41.2381 REMARK 3 T TENSOR REMARK 3 T11: 0.3232 T22: 0.2433 REMARK 3 T33: 0.2216 T12: 0.0371 REMARK 3 T13: -0.0478 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.5983 L22: 0.3799 REMARK 3 L33: 0.1519 L12: 0.2524 REMARK 3 L13: -0.1978 L23: 0.1213 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: -0.0268 S13: -0.0604 REMARK 3 S21: 0.3304 S22: 0.0886 S23: -0.2213 REMARK 3 S31: 0.0610 S32: 0.2379 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9994 -2.0796 24.1816 REMARK 3 T TENSOR REMARK 3 T11: 0.2574 T22: 0.2890 REMARK 3 T33: 0.2028 T12: -0.0489 REMARK 3 T13: 0.0463 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 0.7370 L22: 0.3283 REMARK 3 L33: 0.2339 L12: -0.4290 REMARK 3 L13: 0.4257 L23: 0.1791 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.1566 S13: -0.1225 REMARK 3 S21: -0.0930 S22: 0.0961 S23: -0.2765 REMARK 3 S31: -0.0318 S32: 0.1947 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2505 -22.1199 32.1093 REMARK 3 T TENSOR REMARK 3 T11: 0.3397 T22: 0.2991 REMARK 3 T33: 0.3317 T12: -0.0407 REMARK 3 T13: 0.0007 T23: -0.0409 REMARK 3 L TENSOR REMARK 3 L11: 0.2821 L22: 0.2492 REMARK 3 L33: 0.2399 L12: -0.0325 REMARK 3 L13: -0.0002 L23: -0.2175 REMARK 3 S TENSOR REMARK 3 S11: 0.2025 S12: -0.1008 S13: -0.1756 REMARK 3 S21: 0.0750 S22: -0.1519 S23: 0.4493 REMARK 3 S31: 0.1692 S32: -0.2701 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9428 -31.7302 24.4356 REMARK 3 T TENSOR REMARK 3 T11: 0.9073 T22: 1.0446 REMARK 3 T33: 0.8937 T12: -0.0428 REMARK 3 T13: -0.0278 T23: -0.2182 REMARK 3 L TENSOR REMARK 3 L11: 0.0723 L22: 0.4214 REMARK 3 L33: 0.3515 L12: 0.0039 REMARK 3 L13: -0.0234 L23: -0.3917 REMARK 3 S TENSOR REMARK 3 S11: 0.6308 S12: 0.2361 S13: 0.5078 REMARK 3 S21: -0.1927 S22: 0.2806 S23: 0.9026 REMARK 3 S31: -0.7987 S32: -1.0409 S33: 0.0300 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 30 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6451 -11.7930 41.9195 REMARK 3 T TENSOR REMARK 3 T11: 0.3168 T22: 0.3001 REMARK 3 T33: 0.2085 T12: -0.0103 REMARK 3 T13: 0.0318 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.3496 L22: 0.5916 REMARK 3 L33: 1.0008 L12: -0.1892 REMARK 3 L13: 0.4296 L23: 0.5014 REMARK 3 S TENSOR REMARK 3 S11: -0.0711 S12: -0.2883 S13: 0.1483 REMARK 3 S21: 0.4232 S22: 0.0414 S23: 0.3372 REMARK 3 S31: 0.1025 S32: -0.2886 S33: -0.0002 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6812 -20.0305 29.6266 REMARK 3 T TENSOR REMARK 3 T11: 0.2689 T22: 0.1849 REMARK 3 T33: 0.2189 T12: 0.0191 REMARK 3 T13: -0.0157 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.2578 L22: 0.4919 REMARK 3 L33: 1.3646 L12: 0.4163 REMARK 3 L13: 0.6742 L23: 0.8056 REMARK 3 S TENSOR REMARK 3 S11: 0.0708 S12: -0.0505 S13: -0.1362 REMARK 3 S21: 0.1478 S22: 0.0245 S23: -0.0385 REMARK 3 S31: 0.1224 S32: -0.0121 S33: -0.0003 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9592 -17.5992 26.8093 REMARK 3 T TENSOR REMARK 3 T11: 0.2070 T22: 0.1971 REMARK 3 T33: 0.2095 T12: 0.0196 REMARK 3 T13: -0.0076 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.3482 L22: 1.0248 REMARK 3 L33: 0.8314 L12: -0.0839 REMARK 3 L13: 0.4861 L23: 0.0362 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: -0.0209 S13: -0.0841 REMARK 3 S21: 0.1633 S22: 0.0534 S23: 0.0175 REMARK 3 S31: -0.0052 S32: 0.0064 S33: -0.0001 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4280 -24.4959 5.6450 REMARK 3 T TENSOR REMARK 3 T11: 0.1335 T22: 0.0349 REMARK 3 T33: 0.2532 T12: 0.0128 REMARK 3 T13: 0.1140 T23: -0.1136 REMARK 3 L TENSOR REMARK 3 L11: 5.2907 L22: 0.4900 REMARK 3 L33: 0.3038 L12: -0.0255 REMARK 3 L13: 1.2198 L23: 0.0521 REMARK 3 S TENSOR REMARK 3 S11: -0.3492 S12: 1.5264 S13: 0.5052 REMARK 3 S21: -0.2482 S22: -0.0951 S23: -0.2217 REMARK 3 S31: 0.0763 S32: 0.4158 S33: -0.1796 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 184 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.4833 -22.8269 -6.7577 REMARK 3 T TENSOR REMARK 3 T11: 0.2352 T22: 0.3366 REMARK 3 T33: 0.2354 T12: -0.0178 REMARK 3 T13: -0.0202 T23: -0.0721 REMARK 3 L TENSOR REMARK 3 L11: 0.2301 L22: 0.2365 REMARK 3 L33: 0.2472 L12: 0.1205 REMARK 3 L13: -0.0562 L23: 0.1530 REMARK 3 S TENSOR REMARK 3 S11: 0.0795 S12: 0.4927 S13: -0.2239 REMARK 3 S21: -0.2216 S22: -0.0095 S23: 0.1692 REMARK 3 S31: -0.2057 S32: -0.1603 S33: 0.0046 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0800 -17.2361 -3.6950 REMARK 3 T TENSOR REMARK 3 T11: 0.1490 T22: 0.4911 REMARK 3 T33: 0.2894 T12: -0.0288 REMARK 3 T13: 0.1182 T23: -0.1209 REMARK 3 L TENSOR REMARK 3 L11: 0.7391 L22: 0.6203 REMARK 3 L33: 0.3972 L12: -0.5144 REMARK 3 L13: 0.5298 L23: -0.2812 REMARK 3 S TENSOR REMARK 3 S11: -0.1778 S12: 0.4478 S13: -0.3636 REMARK 3 S21: -0.0322 S22: 0.0577 S23: -0.4058 REMARK 3 S31: -0.3529 S32: -0.3700 S33: -0.1682 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59568 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 86.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.82800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.02400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.23600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.24450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.23600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.02400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.24450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 VAL B 159 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 SER B 19 OG REMARK 470 LEU B 20 CG CD1 CD2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ILE B 25 CG1 CG2 CD1 REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 GLU B 77 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -118.33 60.24 REMARK 500 ASP A 115 125.63 -39.32 REMARK 500 SER B 19 -138.68 50.63 REMARK 500 TYR B 111 -112.29 46.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JAE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JAE B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOQ A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOQ B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOQ GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOQ SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOQ GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOQ SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JAE A 301 10 HET JAE B 301 10 HETNAM JAE 1,3-BENZOTHIAZOL-6-AMINE FORMUL 3 JAE 2(C7 H6 N2 S) FORMUL 5 HOH *263(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 SER A 19 1 7 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 ASP A 115 ALA A 123 1 9 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 ARG B 17 5 9 HELIX 13 AB4 GLN B 18 ALA B 27 1 10 HELIX 14 AB5 ARG B 38 THR B 41 5 4 HELIX 15 AB6 LYS B 62 CYS B 74 1 13 HELIX 16 AB7 THR B 91 SER B 99 1 9 HELIX 17 AB8 ASP B 115 THR B 124 1 10 HELIX 18 AB9 GLY B 141 ARG B 154 1 14 HELIX 19 AC1 PRO B 196 SER B 201 5 6 HELIX 20 AC2 ASP B 203 ARG B 223 1 21 HELIX 21 AC3 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 2.08 CISPEP 2 ARG A 186 PRO A 187 0 0.37 CISPEP 3 ARG B 186 PRO B 187 0 2.28 SITE 1 AC1 9 PRO A 83 PRO A 85 GLY A 109 ARG A 110 SITE 2 AC1 9 TYR A 111 LEU A 138 GLY A 140 GLY A 141 SITE 3 AC1 9 HOH A 510 SITE 1 AC2 8 PRO B 83 PRO B 85 GLY B 109 ARG B 110 SITE 2 AC2 8 TYR B 111 LEU B 138 GLY B 141 HOH B 495 CRYST1 74.048 78.489 86.472 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013505 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011564 0.00000