HEADER TRANSFERASE 12-FEB-19 6QOR TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 21 (2-AMINO-3- TITLE 3 NITROPHENOL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 GENE: TRMD, MAB_3226C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 15-MAY-24 6QOR 1 REMARK REVDAT 3 26-AUG-20 6QOR 1 JRNL REVDAT 2 05-AUG-20 6QOR 1 JRNL REVDAT 1 26-FEB-20 6QOR 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 59233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7687 - 4.6073 1.00 2868 159 0.1718 0.2258 REMARK 3 2 4.6073 - 3.6575 1.00 2744 149 0.1460 0.1603 REMARK 3 3 3.6575 - 3.1953 1.00 2725 154 0.1685 0.1952 REMARK 3 4 3.1953 - 2.9032 1.00 2692 137 0.1824 0.2153 REMARK 3 5 2.9032 - 2.6951 1.00 2696 148 0.1841 0.2103 REMARK 3 6 2.6951 - 2.5362 1.00 2700 140 0.1799 0.2000 REMARK 3 7 2.5362 - 2.4092 1.00 2678 116 0.1736 0.2189 REMARK 3 8 2.4092 - 2.3043 1.00 2671 154 0.1693 0.2323 REMARK 3 9 2.3043 - 2.2156 1.00 2676 136 0.1667 0.2174 REMARK 3 10 2.2156 - 2.1392 1.00 2637 161 0.1719 0.1957 REMARK 3 11 2.1392 - 2.0723 1.00 2665 142 0.1685 0.1853 REMARK 3 12 2.0723 - 2.0131 1.00 2663 139 0.1744 0.2056 REMARK 3 13 2.0131 - 1.9601 1.00 2648 147 0.1707 0.2044 REMARK 3 14 1.9601 - 1.9122 1.00 2646 140 0.1698 0.2118 REMARK 3 15 1.9122 - 1.8688 1.00 2647 153 0.1789 0.2248 REMARK 3 16 1.8688 - 1.8290 1.00 2630 140 0.1940 0.2475 REMARK 3 17 1.8290 - 1.7924 1.00 2635 142 0.2079 0.2708 REMARK 3 18 1.7924 - 1.7586 1.00 2636 164 0.2129 0.2676 REMARK 3 19 1.7586 - 1.7272 1.00 2679 143 0.2116 0.2257 REMARK 3 20 1.7272 - 1.6979 1.00 2647 114 0.2274 0.2486 REMARK 3 21 1.6979 - 1.6705 1.00 2641 131 0.2452 0.2745 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3383 REMARK 3 ANGLE : 1.061 4638 REMARK 3 CHIRALITY : 0.042 521 REMARK 3 PLANARITY : 0.007 604 REMARK 3 DIHEDRAL : 12.044 1239 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8230 -13.6308 22.9097 REMARK 3 T TENSOR REMARK 3 T11: 0.3336 T22: 0.3590 REMARK 3 T33: 0.2371 T12: 0.0221 REMARK 3 T13: -0.0347 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.0115 L22: 0.0355 REMARK 3 L33: 0.0475 L12: -0.0276 REMARK 3 L13: 0.0386 L23: -0.0298 REMARK 3 S TENSOR REMARK 3 S11: -0.1245 S12: -0.5674 S13: 0.0897 REMARK 3 S21: 0.6179 S22: 0.0668 S23: -0.1127 REMARK 3 S31: -0.1656 S32: -0.1973 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.8673 -14.4234 19.5300 REMARK 3 T TENSOR REMARK 3 T11: 0.2957 T22: 0.2996 REMARK 3 T33: 0.2425 T12: 0.0010 REMARK 3 T13: 0.0338 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.2507 L22: 0.2233 REMARK 3 L33: 0.2431 L12: -0.1980 REMARK 3 L13: 0.1542 L23: -0.2827 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: -0.2119 S13: 0.0498 REMARK 3 S21: 0.2575 S22: -0.0043 S23: 0.1833 REMARK 3 S31: -0.0116 S32: -0.2839 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.9932 -16.9400 6.1836 REMARK 3 T TENSOR REMARK 3 T11: 0.2045 T22: 0.2219 REMARK 3 T33: 0.2237 T12: 0.0098 REMARK 3 T13: -0.0100 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.3366 L22: 0.0196 REMARK 3 L33: 0.3242 L12: 0.1253 REMARK 3 L13: 0.0785 L23: 0.0429 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: -0.0346 S13: -0.0963 REMARK 3 S21: 0.0725 S22: 0.0648 S23: 0.0523 REMARK 3 S31: 0.0517 S32: -0.0414 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3392 -4.0464 12.6481 REMARK 3 T TENSOR REMARK 3 T11: 0.2548 T22: 0.2129 REMARK 3 T33: 0.2718 T12: -0.0090 REMARK 3 T13: -0.0307 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 0.0889 L22: 0.0366 REMARK 3 L33: 0.1007 L12: -0.0411 REMARK 3 L13: 0.0449 L23: -0.0783 REMARK 3 S TENSOR REMARK 3 S11: -0.1478 S12: 0.0665 S13: 0.1401 REMARK 3 S21: -0.2986 S22: 0.0865 S23: -0.1639 REMARK 3 S31: -0.3101 S32: 0.2670 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7169 -13.8487 11.3314 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: 0.2276 REMARK 3 T33: 0.2456 T12: 0.0431 REMARK 3 T13: -0.0127 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.2310 L22: 0.0093 REMARK 3 L33: 0.0724 L12: 0.0522 REMARK 3 L13: -0.0531 L23: -0.0170 REMARK 3 S TENSOR REMARK 3 S11: -0.1283 S12: -0.0564 S13: -0.1379 REMARK 3 S21: 0.2667 S22: 0.0500 S23: 0.0438 REMARK 3 S31: 0.1341 S32: -0.0139 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8103 -10.8824 11.4745 REMARK 3 T TENSOR REMARK 3 T11: 0.2028 T22: 0.1954 REMARK 3 T33: 0.2013 T12: 0.0173 REMARK 3 T13: -0.0056 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.5033 L22: 0.0742 REMARK 3 L33: -0.0017 L12: 0.0033 REMARK 3 L13: -0.0880 L23: -0.0301 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: -0.0432 S13: 0.0168 REMARK 3 S21: 0.0301 S22: 0.0441 S23: -0.0378 REMARK 3 S31: 0.0139 S32: 0.0142 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0620 1.4654 26.4612 REMARK 3 T TENSOR REMARK 3 T11: 0.4245 T22: 0.3243 REMARK 3 T33: 0.3904 T12: 0.0693 REMARK 3 T13: 0.0136 T23: -0.1780 REMARK 3 L TENSOR REMARK 3 L11: 0.1318 L22: 0.2940 REMARK 3 L33: 0.4044 L12: -0.0129 REMARK 3 L13: -0.0265 L23: -0.3404 REMARK 3 S TENSOR REMARK 3 S11: -0.0934 S12: -0.1662 S13: 0.3119 REMARK 3 S21: 0.1643 S22: -0.2037 S23: 0.1746 REMARK 3 S31: -0.4317 S32: -0.1125 S33: -0.4992 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0650 -5.1199 40.5136 REMARK 3 T TENSOR REMARK 3 T11: 0.2711 T22: 0.2255 REMARK 3 T33: 0.2338 T12: 0.0385 REMARK 3 T13: -0.0364 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 0.1058 L22: 0.1283 REMARK 3 L33: 0.0119 L12: 0.0726 REMARK 3 L13: -0.0270 L23: 0.0127 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: 0.0876 S13: -0.0859 REMARK 3 S21: 0.2151 S22: 0.0931 S23: -0.2816 REMARK 3 S31: 0.0338 S32: 0.2103 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7982 -2.4708 24.4329 REMARK 3 T TENSOR REMARK 3 T11: 0.2572 T22: 0.2826 REMARK 3 T33: 0.2528 T12: -0.0203 REMARK 3 T13: 0.0406 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 0.1740 L22: 0.0696 REMARK 3 L33: 0.0249 L12: -0.0791 REMARK 3 L13: 0.0815 L23: 0.0701 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: 0.0787 S13: -0.1266 REMARK 3 S21: -0.0490 S22: 0.1339 S23: -0.3317 REMARK 3 S31: -0.0094 S32: 0.1635 S33: -0.0003 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0068 -16.5173 37.5642 REMARK 3 T TENSOR REMARK 3 T11: 0.2638 T22: 0.2844 REMARK 3 T33: 0.2307 T12: -0.0255 REMARK 3 T13: 0.0304 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.6413 L22: 0.1990 REMARK 3 L33: 0.2880 L12: -0.1998 REMARK 3 L13: 0.1502 L23: -0.1101 REMARK 3 S TENSOR REMARK 3 S11: 0.0286 S12: -0.2264 S13: 0.0524 REMARK 3 S21: 0.2082 S22: -0.0546 S23: 0.3117 REMARK 3 S31: 0.0863 S32: -0.1976 S33: 0.0003 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9030 -19.2246 15.8717 REMARK 3 T TENSOR REMARK 3 T11: 0.2048 T22: 0.1918 REMARK 3 T33: 0.2170 T12: 0.0070 REMARK 3 T13: 0.0068 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.7707 L22: 0.4246 REMARK 3 L33: 0.2248 L12: -0.0202 REMARK 3 L13: 0.3104 L23: 0.1759 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: 0.0656 S13: -0.0880 REMARK 3 S21: 0.0792 S22: 0.0502 S23: -0.0402 REMARK 3 S31: 0.0374 S32: 0.0263 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59308 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 87.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.74100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.45750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.63900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.54400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.63900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.45750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.54400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 GLY B 22 REMARK 465 LYS B 23 REMARK 465 ALA B 24 REMARK 465 ILE B 25 REMARK 465 ASP B 26 REMARK 465 ALA B 27 REMARK 465 GLY B 28 REMARK 465 LEU B 29 REMARK 465 VAL B 159 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 GLU A 180 CD OE1 OE2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 18 CG CD OE1 NE2 REMARK 470 LEU B 20 CG CD1 CD2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 LYS B 46 CE NZ REMARK 470 GLU B 180 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR B 84 C PRO B 85 N 0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 84 O - C - N ANGL. DEV. = 13.9 DEGREES REMARK 500 THR B 84 O - C - N ANGL. DEV. = 13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 84 136.73 -175.75 REMARK 500 TYR A 111 -135.18 48.44 REMARK 500 ASP A 135 60.78 -100.31 REMARK 500 SER B 19 46.63 -70.71 REMARK 500 THR B 84 136.41 -172.88 REMARK 500 TYR B 111 -132.99 50.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 564 DISTANCE = 7.43 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JBK A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JBK B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOR A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOR B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOR GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOR SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOR GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOR SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JBK A 301 11 HET JBK B 301 11 HET SO4 B 302 5 HETNAM JBK 2-AZANYL-3-NITRO-PHENOL HETNAM SO4 SULFATE ION FORMUL 3 JBK 2(C6 H6 N2 O3) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *329(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 SER A 19 1 7 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 ASP A 115 ALA A 123 1 9 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 LEU B 13 5 5 HELIX 13 AB4 GLN B 14 SER B 19 1 6 HELIX 14 AB5 ARG B 38 THR B 41 5 4 HELIX 15 AB6 LYS B 62 CYS B 74 1 13 HELIX 16 AB7 THR B 91 SER B 99 1 9 HELIX 17 AB8 GLN B 116 THR B 124 1 9 HELIX 18 AB9 GLY B 141 ARG B 154 1 14 HELIX 19 AC1 PRO B 196 SER B 201 5 6 HELIX 20 AC2 ASP B 203 ARG B 223 1 21 HELIX 21 AC3 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O GLU A 130 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 ASP B 31 ASP B 36 0 SHEET 2 AA4 6 LYS B 2 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 2.95 CISPEP 2 ARG B 186 PRO B 187 0 3.19 SITE 1 AC1 11 THR A 84 PRO A 85 VAL A 131 SER A 132 SITE 2 AC1 11 ILE A 133 GLY A 134 TYR A 136 VAL A 137 SITE 3 AC1 11 LEU A 138 ALA A 144 HOH A 416 SITE 1 AC2 11 THR B 84 PRO B 85 VAL B 131 SER B 132 SITE 2 AC2 11 ILE B 133 GLY B 134 TYR B 136 VAL B 137 SITE 3 AC2 11 LEU B 138 ALA B 144 HOH B 406 SITE 1 AC3 9 ALA A 123 ARG A 125 MET A 126 THR A 185 SITE 2 AC3 9 ARG A 186 ASP B 50 SER B 51 TYR B 53 SITE 3 AC3 9 HOH B 418 CRYST1 74.915 77.088 87.278 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013348 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011458 0.00000