HEADER TRANSFERASE 12-FEB-19 6QOS TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 22 (ETHYL 1H- TITLE 3 PYRAZOLE-4-CARBOXYLATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 15-MAY-24 6QOS 1 REMARK REVDAT 3 26-AUG-20 6QOS 1 JRNL REVDAT 2 05-AUG-20 6QOS 1 JRNL REVDAT 1 26-FEB-20 6QOS 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.570 REMARK 3 FREE R VALUE TEST SET COUNT : 1839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.7163 - 4.8246 1.00 2547 165 0.1652 0.1844 REMARK 3 2 4.8246 - 3.8297 1.00 2401 192 0.1482 0.1755 REMARK 3 3 3.8297 - 3.3456 1.00 2416 146 0.1855 0.2294 REMARK 3 4 3.3456 - 3.0398 1.00 2413 128 0.2086 0.2793 REMARK 3 5 3.0398 - 2.8219 1.00 2375 157 0.2371 0.2842 REMARK 3 6 2.8219 - 2.6555 1.00 2411 124 0.2393 0.2960 REMARK 3 7 2.6555 - 2.5225 1.00 2363 157 0.2134 0.3233 REMARK 3 8 2.5225 - 2.4127 1.00 2337 157 0.2138 0.2929 REMARK 3 9 2.4127 - 2.3198 1.00 2410 111 0.2136 0.2586 REMARK 3 10 2.3198 - 2.2398 1.00 2402 119 0.2150 0.2763 REMARK 3 11 2.2398 - 2.1697 1.00 2359 129 0.2316 0.2975 REMARK 3 12 2.1697 - 2.1077 1.00 2364 140 0.2422 0.2632 REMARK 3 13 2.1077 - 2.0522 1.00 2392 114 0.2696 0.3069 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3374 REMARK 3 ANGLE : 1.033 4620 REMARK 3 CHIRALITY : 0.045 523 REMARK 3 PLANARITY : 0.005 602 REMARK 3 DIHEDRAL : 12.132 1225 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.8521 -14.5896 23.6896 REMARK 3 T TENSOR REMARK 3 T11: 0.3615 T22: 0.5996 REMARK 3 T33: 0.4752 T12: 0.0228 REMARK 3 T13: 0.0251 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.9820 L22: 0.7547 REMARK 3 L33: 3.7868 L12: 0.7440 REMARK 3 L13: 1.9770 L23: 1.6151 REMARK 3 S TENSOR REMARK 3 S11: 0.2478 S12: -0.4896 S13: -0.0975 REMARK 3 S21: 0.2383 S22: -0.0081 S23: -0.5205 REMARK 3 S31: 0.2302 S32: -0.3039 S33: -0.3008 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.0660 -11.5355 23.5900 REMARK 3 T TENSOR REMARK 3 T11: 0.3863 T22: 0.6371 REMARK 3 T33: 0.3668 T12: -0.0443 REMARK 3 T13: 0.0888 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 4.3450 L22: 4.5486 REMARK 3 L33: 8.3781 L12: 3.2113 REMARK 3 L13: 5.0830 L23: 4.8589 REMARK 3 S TENSOR REMARK 3 S11: 0.3317 S12: -1.2776 S13: 0.2232 REMARK 3 S21: 0.6306 S22: -0.5340 S23: 0.4714 REMARK 3 S31: 0.2222 S32: -1.3274 S33: 0.1465 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5536 -24.4782 6.4749 REMARK 3 T TENSOR REMARK 3 T11: 0.2919 T22: 0.3876 REMARK 3 T33: 0.4336 T12: -0.0460 REMARK 3 T13: -0.0365 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 5.6458 L22: 3.0754 REMARK 3 L33: 5.2501 L12: 1.1938 REMARK 3 L13: 0.7137 L23: 1.3665 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: 0.3515 S13: -0.8862 REMARK 3 S21: 0.0693 S22: 0.1688 S23: -0.1696 REMARK 3 S31: 0.5757 S32: -0.0230 S33: -0.2262 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2290 -5.2916 11.8762 REMARK 3 T TENSOR REMARK 3 T11: 0.3334 T22: 0.3126 REMARK 3 T33: 0.3727 T12: -0.0033 REMARK 3 T13: 0.0373 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 4.3687 L22: 1.7295 REMARK 3 L33: 3.6629 L12: 0.8300 REMARK 3 L13: 1.5873 L23: 0.7709 REMARK 3 S TENSOR REMARK 3 S11: -0.2399 S12: 0.1283 S13: 0.4354 REMARK 3 S21: 0.0030 S22: 0.1396 S23: 0.2490 REMARK 3 S31: -0.2973 S32: 0.1520 S33: 0.0110 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3204 -12.0434 6.8427 REMARK 3 T TENSOR REMARK 3 T11: 0.2634 T22: 0.3313 REMARK 3 T33: 0.3383 T12: -0.0019 REMARK 3 T13: 0.0492 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 3.8203 L22: 0.4227 REMARK 3 L33: 3.6190 L12: 1.0755 REMARK 3 L13: 2.0805 L23: 0.4521 REMARK 3 S TENSOR REMARK 3 S11: -0.1124 S12: 0.3449 S13: -0.0607 REMARK 3 S21: -0.0542 S22: 0.2341 S23: 0.0515 REMARK 3 S31: -0.1125 S32: 0.1052 S33: -0.0973 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8636 -9.9262 20.4525 REMARK 3 T TENSOR REMARK 3 T11: 0.2925 T22: 0.2829 REMARK 3 T33: 0.2739 T12: 0.0235 REMARK 3 T13: 0.0341 T23: -0.0565 REMARK 3 L TENSOR REMARK 3 L11: 3.9098 L22: 1.1913 REMARK 3 L33: 1.5475 L12: 0.6182 REMARK 3 L13: 1.5312 L23: -0.6323 REMARK 3 S TENSOR REMARK 3 S11: -0.0897 S12: -0.2788 S13: 0.1008 REMARK 3 S21: 0.2169 S22: 0.2196 S23: 0.0000 REMARK 3 S31: -0.1731 S32: 0.0304 S33: -0.1513 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0729 -4.1062 41.0901 REMARK 3 T TENSOR REMARK 3 T11: 0.4977 T22: 0.4412 REMARK 3 T33: 0.4545 T12: 0.0842 REMARK 3 T13: -0.1234 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.9937 L22: 4.9818 REMARK 3 L33: 2.8496 L12: 0.9552 REMARK 3 L13: 0.1467 L23: -0.3725 REMARK 3 S TENSOR REMARK 3 S11: 0.2487 S12: -0.2572 S13: -0.7113 REMARK 3 S21: 1.0031 S22: 0.0280 S23: -0.7466 REMARK 3 S31: 0.4365 S32: 0.3974 S33: -0.3677 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3911 -2.2843 23.7093 REMARK 3 T TENSOR REMARK 3 T11: 0.3211 T22: 0.3846 REMARK 3 T33: 0.4071 T12: -0.0204 REMARK 3 T13: 0.0112 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 2.9771 L22: 5.1303 REMARK 3 L33: 2.9554 L12: 0.7837 REMARK 3 L13: 0.4940 L23: 3.1882 REMARK 3 S TENSOR REMARK 3 S11: -0.0746 S12: 0.1318 S13: -0.1863 REMARK 3 S21: -0.0552 S22: 0.1143 S23: -0.4493 REMARK 3 S31: 0.1375 S32: 0.2513 S33: -0.1004 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2070 -23.7654 31.6805 REMARK 3 T TENSOR REMARK 3 T11: 0.5170 T22: 0.4175 REMARK 3 T33: 0.4378 T12: -0.0225 REMARK 3 T13: -0.0306 T23: 0.1425 REMARK 3 L TENSOR REMARK 3 L11: 2.7573 L22: 3.2291 REMARK 3 L33: 2.7695 L12: 1.9560 REMARK 3 L13: 1.0099 L23: 2.5931 REMARK 3 S TENSOR REMARK 3 S11: 0.1535 S12: -0.3013 S13: -0.6091 REMARK 3 S21: 0.0362 S22: -0.0392 S23: 0.5810 REMARK 3 S31: 0.5621 S32: -0.4153 S33: -0.0757 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6198 -27.3363 33.5586 REMARK 3 T TENSOR REMARK 3 T11: 0.6108 T22: 0.4288 REMARK 3 T33: 0.5574 T12: -0.0816 REMARK 3 T13: 0.0102 T23: 0.1664 REMARK 3 L TENSOR REMARK 3 L11: 3.8619 L22: 5.4956 REMARK 3 L33: 8.0459 L12: 1.9780 REMARK 3 L13: 3.1259 L23: 5.5073 REMARK 3 S TENSOR REMARK 3 S11: 0.2005 S12: -0.6696 S13: -0.5716 REMARK 3 S21: 0.9040 S22: -0.4050 S23: 0.5781 REMARK 3 S31: 0.5366 S32: -0.7584 S33: -0.1144 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5933 -13.7780 40.1135 REMARK 3 T TENSOR REMARK 3 T11: 0.5618 T22: 0.4339 REMARK 3 T33: 0.3493 T12: 0.0344 REMARK 3 T13: -0.0313 T23: 0.0775 REMARK 3 L TENSOR REMARK 3 L11: 3.1708 L22: 1.6182 REMARK 3 L33: 1.6650 L12: 0.2689 REMARK 3 L13: 0.4054 L23: 1.6434 REMARK 3 S TENSOR REMARK 3 S11: -0.0382 S12: -0.5884 S13: -0.3747 REMARK 3 S21: 0.5191 S22: 0.1117 S23: 0.1060 REMARK 3 S31: 0.4635 S32: 0.2202 S33: 0.0042 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6803 -21.8803 18.7929 REMARK 3 T TENSOR REMARK 3 T11: 0.3680 T22: 0.3176 REMARK 3 T33: 0.4210 T12: 0.0269 REMARK 3 T13: 0.0024 T23: -0.0480 REMARK 3 L TENSOR REMARK 3 L11: 2.8415 L22: 8.5412 REMARK 3 L33: 2.1218 L12: 3.8229 REMARK 3 L13: 1.9545 L23: 2.5297 REMARK 3 S TENSOR REMARK 3 S11: -0.0542 S12: 0.2215 S13: -0.6697 REMARK 3 S21: -0.2907 S22: 0.3601 S23: -0.7862 REMARK 3 S31: -0.1474 S32: 0.2132 S33: -0.3936 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1241 -17.1169 31.7065 REMARK 3 T TENSOR REMARK 3 T11: 0.4110 T22: 0.3929 REMARK 3 T33: 0.3602 T12: -0.0132 REMARK 3 T13: -0.0797 T23: 0.0445 REMARK 3 L TENSOR REMARK 3 L11: 1.8284 L22: 2.8369 REMARK 3 L33: 2.5684 L12: 1.0904 REMARK 3 L13: 0.0314 L23: 1.2751 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: -0.0478 S13: 0.0319 REMARK 3 S21: 0.3262 S22: -0.0770 S23: -0.2468 REMARK 3 S31: 0.0843 S32: 0.0263 S33: 0.1135 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5020 -18.6339 32.9466 REMARK 3 T TENSOR REMARK 3 T11: 0.4186 T22: 0.3423 REMARK 3 T33: 0.4989 T12: 0.0579 REMARK 3 T13: -0.1156 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.4776 L22: 2.5400 REMARK 3 L33: 4.3448 L12: 0.6974 REMARK 3 L13: 1.9759 L23: 2.2423 REMARK 3 S TENSOR REMARK 3 S11: 0.0984 S12: -0.1033 S13: -0.6401 REMARK 3 S21: 0.5250 S22: 0.2905 S23: -0.4694 REMARK 3 S31: 0.2370 S32: 0.4619 S33: -0.4071 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4662 -19.8559 18.0414 REMARK 3 T TENSOR REMARK 3 T11: 0.2659 T22: 0.2654 REMARK 3 T33: 0.3562 T12: -0.0060 REMARK 3 T13: -0.0160 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 1.9662 L22: 1.0367 REMARK 3 L33: 3.0971 L12: -0.4052 REMARK 3 L13: 0.0253 L23: -1.3540 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: 0.0196 S13: -0.2893 REMARK 3 S21: 0.0782 S22: 0.1349 S23: 0.0523 REMARK 3 S31: 0.1482 S32: 0.0247 S33: -0.1444 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.0617 -23.3169 -6.6177 REMARK 3 T TENSOR REMARK 3 T11: 0.3657 T22: 0.7103 REMARK 3 T33: 0.4082 T12: -0.0681 REMARK 3 T13: -0.0577 T23: -0.1797 REMARK 3 L TENSOR REMARK 3 L11: 3.0008 L22: 0.9186 REMARK 3 L33: 3.3113 L12: 0.7255 REMARK 3 L13: -1.3921 L23: -1.6465 REMARK 3 S TENSOR REMARK 3 S11: -0.0936 S12: 1.3693 S13: -0.7560 REMARK 3 S21: -0.2972 S22: 0.3519 S23: 0.1428 REMARK 3 S31: 0.0508 S32: -0.3359 S33: -0.1989 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9015 -19.6511 -6.6417 REMARK 3 T TENSOR REMARK 3 T11: 0.4149 T22: 0.9445 REMARK 3 T33: 0.5125 T12: 0.0031 REMARK 3 T13: 0.0800 T23: -0.2178 REMARK 3 L TENSOR REMARK 3 L11: 1.1091 L22: 1.9214 REMARK 3 L33: 3.8542 L12: 0.5027 REMARK 3 L13: 2.1078 L23: 1.4203 REMARK 3 S TENSOR REMARK 3 S11: -0.2991 S12: 1.3358 S13: -0.5580 REMARK 3 S21: -0.6003 S22: 0.0823 S23: -0.2943 REMARK 3 S31: -0.0338 S32: 0.3486 S33: 0.2220 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4809 -10.0933 1.4322 REMARK 3 T TENSOR REMARK 3 T11: 0.4078 T22: 0.4982 REMARK 3 T33: 0.5698 T12: -0.0003 REMARK 3 T13: 0.0745 T23: -0.1082 REMARK 3 L TENSOR REMARK 3 L11: 7.3056 L22: 2.2446 REMARK 3 L33: 6.0177 L12: 2.5776 REMARK 3 L13: -0.8192 L23: -3.1041 REMARK 3 S TENSOR REMARK 3 S11: 0.2181 S12: -0.6782 S13: 1.3509 REMARK 3 S21: -0.1820 S22: -0.2358 S23: -0.8238 REMARK 3 S31: -0.1172 S32: -0.1429 S33: 0.0189 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33098 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 84.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.67400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.45650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.37700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.67850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.37700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.45650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.67850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 LEU A 160 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 17 CZ NH1 NH2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 SER A 177 OG REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 GLN B 14 CG CD OE1 NE2 REMARK 470 ARG B 17 NH1 NH2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ARG B 39 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 VAL B 159 CG1 CG2 REMARK 470 HIS B 204 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 221 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 115 123.18 -34.85 REMARK 500 PHE B 9 66.42 -119.31 REMARK 500 THR B 84 143.05 -171.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOJ A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOJ B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOS A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOS B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOS GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOS SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOS GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOS SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET GOJ A 301 10 HET SO4 B 301 5 HET GOJ B 302 10 HETNAM GOJ ETHYL 1~{H}-PYRAZOLE-4-CARBOXYLATE HETNAM SO4 SULFATE ION FORMUL 3 GOJ 2(C6 H8 N2 O2) FORMUL 4 SO4 O4 S 2- FORMUL 6 HOH *140(H2 O) HELIX 1 AA1 SER A 19 ALA A 27 1 9 HELIX 2 AA2 ARG A 38 THR A 41 5 4 HELIX 3 AA3 LYS A 62 CYS A 74 1 13 HELIX 4 AA4 THR A 91 SER A 99 1 9 HELIX 5 AA5 ASP A 115 ALA A 123 1 9 HELIX 6 AA6 GLY A 141 ARG A 154 1 14 HELIX 7 AA7 PRO A 196 SER A 201 5 6 HELIX 8 AA8 ASP A 203 ARG A 223 1 21 HELIX 9 AA9 PRO A 224 LEU A 227 5 4 HELIX 10 AB1 PHE B 9 GLN B 14 1 6 HELIX 11 AB2 SER B 19 ALA B 27 1 9 HELIX 12 AB3 ARG B 38 THR B 41 5 4 HELIX 13 AB4 LYS B 62 CYS B 74 1 13 HELIX 14 AB5 THR B 91 SER B 99 1 9 HELIX 15 AB6 ASP B 115 ALA B 123 1 9 HELIX 16 AB7 GLY B 141 ARG B 154 1 14 HELIX 17 AB8 PRO B 197 GLY B 202 1 6 HELIX 18 AB9 ASP B 203 ARG B 223 1 21 HELIX 19 AC1 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O GLU A 130 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N ILE B 3 O ASP B 31 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O SER B 132 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 0.40 CISPEP 2 ARG B 186 PRO B 187 0 1.99 SITE 1 AC1 10 PRO A 83 PRO A 85 GLY A 109 SER A 132 SITE 2 AC1 10 ILE A 133 GLY A 134 TYR A 136 LEU A 138 SITE 3 AC1 10 GLY A 140 GLY A 141 SITE 1 AC2 2 ARG B 129 HOH B 424 SITE 1 AC3 9 PRO B 85 GLY B 109 SER B 132 ILE B 133 SITE 2 AC3 9 GLY B 134 TYR B 136 LEU B 138 GLY B 140 SITE 3 AC3 9 GLY B 141 CRYST1 74.913 81.357 84.754 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013349 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012292 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011799 0.00000