HEADER HYDROLASE 14-FEB-19 6QPP TITLE RHIZOMUCOR MIEHEI LIPASE PROPEPTIDE COMPLEX, NATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRIACYLGLYCEROL LIPASE; COMPND 5 EC: 3.1.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOMUCOR MIEHEI; SOURCE 3 ORGANISM_TAXID: 4839; SOURCE 4 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS LIPASE, PROPEPTIDE, INTRAMOLECULAR CHAPERONE, INHIBITION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.MOROZ,E.BLAGOVA,V.REISER,R.SAIKIA,S.DALAL,C.I.JORGENSEN, AUTHOR 2 L.BAUNSGAARD,B.ANDERSEN,A.SVENDSEN,K.S.WILSON REVDAT 6 13-NOV-24 6QPP 1 REMARK REVDAT 5 24-JAN-24 6QPP 1 HETSYN REVDAT 4 29-JUL-20 6QPP 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 04-SEP-19 6QPP 1 JRNL REVDAT 2 10-JUL-19 6QPP 1 REMARK REVDAT 1 13-MAR-19 6QPP 0 JRNL AUTH O.V.MOROZ,E.BLAGOVA,V.REISER,R.SAIKIA,S.DALAL,C.I.JORGENSEN, JRNL AUTH 2 V.K.BHATIA,L.BAUNSGAARD,B.ANDERSEN,A.SVENDSEN,K.S.WILSON JRNL TITL NOVEL INHIBITORY FUNCTION OF THERHIZOMUCOR MIEHEILIPASE JRNL TITL 2 PROPEPTIDE AND THREE-DIMENSIONAL STRUCTURES OF ITS COMPLEXES JRNL TITL 3 WITH THE ENZYME. JRNL REF ACS OMEGA V. 4 9964 2019 JRNL REFN ESSN 2470-1343 JRNL PMID 31460089 JRNL DOI 10.1021/ACSOMEGA.9B00612 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 52758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2735 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3896 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.1560 REMARK 3 BIN FREE R VALUE SET COUNT : 203 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2384 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.91000 REMARK 3 B22 (A**2) : -0.91000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.227 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2465 ; 0.017 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2138 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3376 ; 1.850 ; 1.672 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5011 ; 1.184 ; 1.638 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 6.824 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;30.217 ;22.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 360 ;10.763 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;16.692 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2760 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 454 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1241 ; 2.268 ; 1.214 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1240 ; 2.224 ; 1.213 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1546 ; 2.765 ; 1.830 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1547 ; 2.770 ; 1.831 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1224 ; 3.100 ; 1.477 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1224 ; 3.099 ; 1.477 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1831 ; 3.762 ; 2.128 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2721 ; 3.595 ;15.212 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2710 ; 3.582 ;15.143 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4603 ; 4.044 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 111 ;20.975 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4585 ;11.257 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6QPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55513 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3TGL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8K, SODIUM CACODYLATE, AMMONIUM REMARK 280 SULPHATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.02000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.51000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.02000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.51000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 ARG A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 TYR A 9 REMARK 465 LEU A 10 REMARK 465 GLY A 11 REMARK 465 PHE A 12 REMARK 465 LEU A 13 REMARK 465 ILE A 14 REMARK 465 VAL A 15 REMARK 465 PHE A 16 REMARK 465 PHE A 17 REMARK 465 THR A 18 REMARK 465 ALA A 19 REMARK 465 PHE A 20 REMARK 465 LEU A 21 REMARK 465 VAL A 22 REMARK 465 GLU A 23 REMARK 465 ALA A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 ILE A 27 REMARK 465 LYS A 28 REMARK 465 ARG A 29 REMARK 465 GLN A 30 REMARK 465 SER A 31 REMARK 465 ASN A 32 REMARK 465 SER A 33 REMARK 465 THR A 34 REMARK 465 VAL A 35 REMARK 465 ASP A 36 REMARK 465 SER A 50 REMARK 465 SER A 51 REMARK 465 SER A 52 REMARK 465 PRO A 53 REMARK 465 SER A 54 REMARK 465 ASP A 88 REMARK 465 SER A 89 REMARK 465 VAL A 90 REMARK 465 VAL A 91 REMARK 465 GLN A 92 REMARK 465 ALA A 93 REMARK 465 MET A 94 REMARK 465 SER A 95 REMARK 465 ILE A 96 REMARK 465 ASP A 97 REMARK 465 GLY A 98 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 135 CD1 REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 GLU A 256 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 747 O HOH A 747 2555 1.65 REMARK 500 NH2 ARG A 180 O HOH A 747 2555 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 99 N GLY A 99 CA 0.145 REMARK 500 SER A 353 CB SER A 353 OG -0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 290 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 296 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 296 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 CYS A 329 CB - CA - C ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 82 33.38 -147.94 REMARK 500 SER A 238 -131.13 66.43 REMARK 500 ASN A 262 14.95 -145.23 REMARK 500 GLU A 295 -124.87 50.34 REMARK 500 CYS A 338 -124.21 -109.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 124 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 756 DISTANCE = 6.05 ANGSTROMS DBREF 6QPP A 1 363 UNP P19515 LIP_RHIMI 1 363 SEQRES 1 A 363 MET VAL LEU LYS GLN ARG ALA ASN TYR LEU GLY PHE LEU SEQRES 2 A 363 ILE VAL PHE PHE THR ALA PHE LEU VAL GLU ALA VAL PRO SEQRES 3 A 363 ILE LYS ARG GLN SER ASN SER THR VAL ASP SER LEU PRO SEQRES 4 A 363 PRO LEU ILE PRO SER ARG THR SER ALA PRO SER SER SER SEQRES 5 A 363 PRO SER THR THR ASP PRO GLU ALA PRO ALA MET SER ARG SEQRES 6 A 363 ASN GLY PRO LEU PRO SER ASP VAL GLU THR LYS TYR GLY SEQRES 7 A 363 MET ALA LEU ASN ALA THR SER TYR PRO ASP SER VAL VAL SEQRES 8 A 363 GLN ALA MET SER ILE ASP GLY GLY ILE ARG ALA ALA THR SEQRES 9 A 363 SER GLN GLU ILE ASN GLU LEU THR TYR TYR THR THR LEU SEQRES 10 A 363 SER ALA ASN SER TYR CYS ARG THR VAL ILE PRO GLY ALA SEQRES 11 A 363 THR TRP ASP CYS ILE HIS CYS ASP ALA THR GLU ASP LEU SEQRES 12 A 363 LYS ILE ILE LYS THR TRP SER THR LEU ILE TYR ASP THR SEQRES 13 A 363 ASN ALA MET VAL ALA ARG GLY ASP SER GLU LYS THR ILE SEQRES 14 A 363 TYR ILE VAL PHE ARG GLY SER SER SER ILE ARG ASN TRP SEQRES 15 A 363 ILE ALA ASP LEU THR PHE VAL PRO VAL SER TYR PRO PRO SEQRES 16 A 363 VAL SER GLY THR LYS VAL HIS LYS GLY PHE LEU ASP SER SEQRES 17 A 363 TYR GLY GLU VAL GLN ASN GLU LEU VAL ALA THR VAL LEU SEQRES 18 A 363 ASP GLN PHE LYS GLN TYR PRO SER TYR LYS VAL ALA VAL SEQRES 19 A 363 THR GLY HIS SER LEU GLY GLY ALA THR ALA LEU LEU CYS SEQRES 20 A 363 ALA LEU ASP LEU TYR GLN ARG GLU GLU GLY LEU SER SER SEQRES 21 A 363 SER ASN LEU PHE LEU TYR THR GLN GLY GLN PRO ARG VAL SEQRES 22 A 363 GLY ASP PRO ALA PHE ALA ASN TYR VAL VAL SER THR GLY SEQRES 23 A 363 ILE PRO TYR ARG ARG THR VAL ASN GLU ARG ASP ILE VAL SEQRES 24 A 363 PRO HIS LEU PRO PRO ALA ALA PHE GLY PHE LEU HIS ALA SEQRES 25 A 363 GLY GLU GLU TYR TRP ILE THR ASP ASN SER PRO GLU THR SEQRES 26 A 363 VAL GLN VAL CYS THR SER ASP LEU GLU THR SER ASP CYS SEQRES 27 A 363 SER ASN SER ILE VAL PRO PHE THR SER VAL LEU ASP HIS SEQRES 28 A 363 LEU SER TYR PHE GLY ILE ASN THR GLY LEU CYS THR HET NAG A 501 14 HET EDO A 502 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG C8 H15 N O6 FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *156(H2 O) HELIX 1 AA1 ILE A 42 THR A 46 5 5 HELIX 2 AA2 GLU A 59 ASN A 66 1 8 HELIX 3 AA3 THR A 104 SER A 121 1 18 HELIX 4 AA4 HIS A 136 GLU A 141 5 6 HELIX 5 AA5 SER A 178 LEU A 186 1 9 HELIX 6 AA6 LYS A 203 TYR A 227 1 25 HELIX 7 AA7 SER A 238 GLU A 255 1 18 HELIX 8 AA8 ASP A 275 THR A 285 1 11 HELIX 9 AA9 ILE A 298 LEU A 302 5 5 HELIX 10 AB1 PRO A 304 GLY A 308 5 5 HELIX 11 AB2 CYS A 338 VAL A 343 5 6 HELIX 12 AB3 VAL A 348 HIS A 351 5 4 SHEET 1 AA1 2 THR A 75 LYS A 76 0 SHEET 2 AA1 2 MET A 79 ALA A 80 -1 O MET A 79 N LYS A 76 SHEET 1 AA2 9 ILE A 100 ALA A 102 0 SHEET 2 AA2 9 THR A 325 CYS A 329 -1 O VAL A 328 N ARG A 101 SHEET 3 AA2 9 GLU A 314 ASP A 320 -1 N TRP A 317 O GLN A 327 SHEET 4 AA2 9 TYR A 289 ASN A 294 1 N VAL A 293 O ILE A 318 SHEET 5 AA2 9 LEU A 263 GLN A 268 1 N THR A 267 O THR A 292 SHEET 6 AA2 9 LYS A 231 HIS A 237 1 N VAL A 234 O TYR A 266 SHEET 7 AA2 9 THR A 168 PHE A 173 1 N ILE A 169 O LYS A 231 SHEET 8 AA2 9 ASN A 157 GLY A 163 -1 N GLY A 163 O THR A 168 SHEET 9 AA2 9 LYS A 144 SER A 150 -1 N LYS A 144 O ARG A 162 SHEET 1 AA3 2 PRO A 190 SER A 192 0 SHEET 2 AA3 2 LYS A 200 HIS A 202 -1 O VAL A 201 N VAL A 191 SHEET 1 AA4 2 SER A 353 TYR A 354 0 SHEET 2 AA4 2 ILE A 357 ASN A 358 -1 O ILE A 357 N TYR A 354 SSBOND 1 CYS A 123 CYS A 362 1555 1555 2.06 SSBOND 2 CYS A 134 CYS A 137 1555 1555 2.13 SSBOND 3 CYS A 329 CYS A 338 1555 1555 2.06 LINK ND2 ASN A 82 C1 NAG A 501 1555 1555 1.42 CISPEP 1 ILE A 127 PRO A 128 0 15.08 CISPEP 2 LEU A 302 PRO A 303 0 -21.02 CISPEP 3 SER A 322 PRO A 323 0 -5.10 CISPEP 4 VAL A 343 PRO A 344 0 2.37 CRYST1 98.040 61.020 62.650 90.00 111.97 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010200 0.000000 0.004115 0.00000 SCALE2 0.000000 0.016388 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017212 0.00000