HEADER TRANSFERASE 19-FEB-19 6QQV TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 2 24-JAN-24 6QQV 1 REMARK REVDAT 1 18-SEP-19 6QQV 0 JRNL AUTH A.J.WHITEHOUSE,S.E.THOMAS,K.P.BROWN,A.FANOURAKIS,D.S.CHAN, JRNL AUTH 2 M.D.J.LIBARDO,V.MENDES,H.I.M.BOSHOFF,R.A.FLOTO,C.ABELL, JRNL AUTH 3 T.L.BLUNDELL,A.G.COYNE JRNL TITL DEVELOPMENT OF INHIBITORS AGAINSTMYCOBACTERIUM ABSCESSUSTRNA JRNL TITL 2 (M1G37) METHYLTRANSFERASE (TRMD) USING FRAGMENT-BASED JRNL TITL 3 APPROACHES. JRNL REF J.MED.CHEM. V. 62 7210 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31282680 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00809 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 54638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.290 REMARK 3 FREE R VALUE TEST SET COUNT : 2893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.7615 - 4.7222 1.00 2639 154 0.1696 0.2010 REMARK 3 2 4.7222 - 3.7484 1.00 2502 166 0.1496 0.1737 REMARK 3 3 3.7484 - 3.2746 1.00 2531 129 0.1687 0.1929 REMARK 3 4 3.2746 - 2.9752 1.00 2513 110 0.1838 0.1845 REMARK 3 5 2.9752 - 2.7620 1.00 2452 144 0.1930 0.2154 REMARK 3 6 2.7620 - 2.5991 1.00 2481 147 0.1895 0.2276 REMARK 3 7 2.5991 - 2.4690 1.00 2452 145 0.1794 0.2154 REMARK 3 8 2.4690 - 2.3615 1.00 2438 158 0.1792 0.2120 REMARK 3 9 2.3615 - 2.2706 1.00 2451 124 0.1782 0.2046 REMARK 3 10 2.2706 - 2.1922 1.00 2467 124 0.1822 0.1862 REMARK 3 11 2.1922 - 2.1237 1.00 2462 134 0.1854 0.2327 REMARK 3 12 2.1237 - 2.0630 1.00 2456 131 0.1795 0.2178 REMARK 3 13 2.0630 - 2.0087 1.00 2435 139 0.1785 0.1908 REMARK 3 14 2.0087 - 1.9596 1.00 2424 129 0.1779 0.2002 REMARK 3 15 1.9596 - 1.9151 1.00 2453 129 0.1708 0.1980 REMARK 3 16 1.9151 - 1.8743 1.00 2426 143 0.1723 0.2131 REMARK 3 17 1.8743 - 1.8368 1.00 2465 113 0.1868 0.2110 REMARK 3 18 1.8368 - 1.8022 1.00 2414 145 0.2011 0.2657 REMARK 3 19 1.8022 - 1.7700 1.00 2414 147 0.2222 0.2746 REMARK 3 20 1.7700 - 1.7400 1.00 2458 129 0.2409 0.2756 REMARK 3 21 1.7400 - 1.7119 1.00 2412 153 0.2572 0.2988 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3354 REMARK 3 ANGLE : 1.032 4606 REMARK 3 CHIRALITY : 0.041 517 REMARK 3 PLANARITY : 0.006 592 REMARK 3 DIHEDRAL : 12.403 1203 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.4406 -13.5127 22.0438 REMARK 3 T TENSOR REMARK 3 T11: 0.3170 T22: 0.4112 REMARK 3 T33: 0.2411 T12: -0.0128 REMARK 3 T13: -0.0011 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.2121 L22: 0.0790 REMARK 3 L33: 0.1273 L12: 0.0253 REMARK 3 L13: 0.0412 L23: -0.0837 REMARK 3 S TENSOR REMARK 3 S11: 0.0826 S12: -0.6568 S13: 0.0615 REMARK 3 S21: 0.5128 S22: -0.2553 S23: 0.2514 REMARK 3 S31: -0.1350 S32: -0.2953 S33: -0.0020 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.3588 -1.5033 31.2014 REMARK 3 T TENSOR REMARK 3 T11: 0.5998 T22: 0.7467 REMARK 3 T33: 0.7543 T12: 0.0943 REMARK 3 T13: 0.0846 T23: -0.1864 REMARK 3 L TENSOR REMARK 3 L11: -0.0119 L22: 0.0287 REMARK 3 L33: 0.0020 L12: -0.0351 REMARK 3 L13: 0.0028 L23: 0.0160 REMARK 3 S TENSOR REMARK 3 S11: 0.3048 S12: 0.1502 S13: 0.4788 REMARK 3 S21: 0.1362 S22: 0.1783 S23: 0.5247 REMARK 3 S31: 0.0686 S32: -0.2461 S33: 0.0022 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.7030 -19.9766 15.0283 REMARK 3 T TENSOR REMARK 3 T11: 0.2560 T22: 0.3098 REMARK 3 T33: 0.2705 T12: -0.0339 REMARK 3 T13: 0.0247 T23: 0.0519 REMARK 3 L TENSOR REMARK 3 L11: 0.4190 L22: 0.2130 REMARK 3 L33: 0.0990 L12: -0.2171 REMARK 3 L13: 0.1957 L23: -0.1835 REMARK 3 S TENSOR REMARK 3 S11: -0.0522 S12: -0.2114 S13: -0.0882 REMARK 3 S21: 0.1476 S22: 0.1295 S23: 0.2488 REMARK 3 S31: 0.0759 S32: -0.2512 S33: 0.0007 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6352 -17.3086 6.3905 REMARK 3 T TENSOR REMARK 3 T11: 0.1717 T22: 0.2251 REMARK 3 T33: 0.2602 T12: -0.0039 REMARK 3 T13: -0.0059 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.6172 L22: 0.1159 REMARK 3 L33: 0.7959 L12: 0.3042 REMARK 3 L13: 0.4385 L23: 0.1433 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: 0.0488 S13: -0.1162 REMARK 3 S21: 0.1246 S22: 0.0380 S23: 0.0337 REMARK 3 S31: 0.1040 S32: -0.1104 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0003 -4.3918 12.8457 REMARK 3 T TENSOR REMARK 3 T11: 0.2582 T22: 0.1991 REMARK 3 T33: 0.2741 T12: -0.0047 REMARK 3 T13: -0.0301 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 0.1805 L22: 0.0050 REMARK 3 L33: 0.1749 L12: -0.0221 REMARK 3 L13: 0.0387 L23: -0.0779 REMARK 3 S TENSOR REMARK 3 S11: -0.0727 S12: 0.0796 S13: 0.1964 REMARK 3 S21: -0.0855 S22: -0.0092 S23: -0.0285 REMARK 3 S31: -0.2093 S32: 0.1190 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9025 -11.9848 11.6673 REMARK 3 T TENSOR REMARK 3 T11: 0.2061 T22: 0.2056 REMARK 3 T33: 0.2162 T12: 0.0247 REMARK 3 T13: -0.0092 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.1170 L22: -0.1429 REMARK 3 L33: 0.2933 L12: 0.1939 REMARK 3 L13: 0.3438 L23: 0.2271 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: -0.0134 S13: 0.0027 REMARK 3 S21: 0.0376 S22: 0.0167 S23: -0.0290 REMARK 3 S31: 0.0141 S32: -0.0717 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7851 0.6041 26.8904 REMARK 3 T TENSOR REMARK 3 T11: 0.4949 T22: 0.3655 REMARK 3 T33: 0.3953 T12: -0.0265 REMARK 3 T13: 0.0614 T23: -0.1107 REMARK 3 L TENSOR REMARK 3 L11: 0.0311 L22: -0.0121 REMARK 3 L33: 0.0493 L12: 0.0173 REMARK 3 L13: 0.0424 L23: -0.0078 REMARK 3 S TENSOR REMARK 3 S11: 0.2491 S12: -0.0991 S13: 0.1325 REMARK 3 S21: -0.0067 S22: -0.4061 S23: 0.1413 REMARK 3 S31: -0.4286 S32: -0.0038 S33: -0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8462 -4.7139 39.3826 REMARK 3 T TENSOR REMARK 3 T11: 0.3297 T22: 0.2326 REMARK 3 T33: 0.2394 T12: 0.0344 REMARK 3 T13: -0.0602 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.3036 L22: 0.3340 REMARK 3 L33: 0.0900 L12: -0.0431 REMARK 3 L13: -0.0310 L23: 0.2165 REMARK 3 S TENSOR REMARK 3 S11: 0.0514 S12: -0.0032 S13: -0.0444 REMARK 3 S21: 0.3501 S22: 0.1227 S23: -0.2167 REMARK 3 S31: 0.1482 S32: 0.2435 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6900 -2.2720 24.1832 REMARK 3 T TENSOR REMARK 3 T11: 0.2480 T22: 0.2976 REMARK 3 T33: 0.2333 T12: -0.0536 REMARK 3 T13: 0.0328 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.3020 L22: 0.2017 REMARK 3 L33: 0.1872 L12: -0.1816 REMARK 3 L13: 0.1479 L23: -0.1718 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: 0.1375 S13: -0.1198 REMARK 3 S21: -0.1126 S22: 0.1592 S23: -0.1951 REMARK 3 S31: -0.1160 S32: 0.3722 S33: 0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3053 -22.5703 34.4655 REMARK 3 T TENSOR REMARK 3 T11: 0.3304 T22: 0.3431 REMARK 3 T33: 0.3458 T12: -0.0376 REMARK 3 T13: 0.0338 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 0.3094 L22: 0.1481 REMARK 3 L33: 0.1064 L12: -0.1714 REMARK 3 L13: 0.0906 L23: -0.1490 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: -0.3534 S13: -0.3723 REMARK 3 S21: 0.3501 S22: 0.0038 S23: 0.5514 REMARK 3 S31: 0.3578 S32: -0.3219 S33: -0.0004 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5266 -4.6132 41.9578 REMARK 3 T TENSOR REMARK 3 T11: 0.2656 T22: 0.2570 REMARK 3 T33: 0.2438 T12: 0.0301 REMARK 3 T13: 0.0030 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 0.1006 L22: 0.0381 REMARK 3 L33: 0.0635 L12: 0.0878 REMARK 3 L13: 0.1413 L23: 0.0362 REMARK 3 S TENSOR REMARK 3 S11: -0.0884 S12: -0.2606 S13: 0.3720 REMARK 3 S21: 0.0831 S22: -0.0864 S23: 0.3511 REMARK 3 S31: -0.0641 S32: -0.0604 S33: -0.0009 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4672 -19.2434 28.3785 REMARK 3 T TENSOR REMARK 3 T11: 0.2353 T22: 0.1676 REMARK 3 T33: 0.2043 T12: 0.0292 REMARK 3 T13: -0.0093 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.7470 L22: 0.8421 REMARK 3 L33: 1.0373 L12: 0.0964 REMARK 3 L13: 0.5157 L23: 0.3725 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.0521 S13: -0.1038 REMARK 3 S21: 0.1887 S22: 0.0164 S23: -0.0225 REMARK 3 S31: 0.1580 S32: 0.0153 S33: -0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2051 -25.5314 7.2082 REMARK 3 T TENSOR REMARK 3 T11: 0.2825 T22: 0.2993 REMARK 3 T33: 0.4437 T12: 0.0229 REMARK 3 T13: 0.0278 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.0117 L22: 0.0601 REMARK 3 L33: 0.0325 L12: -0.0869 REMARK 3 L13: -0.0052 L23: 0.0587 REMARK 3 S TENSOR REMARK 3 S11: -0.0440 S12: 0.1410 S13: -0.0505 REMARK 3 S21: -0.1637 S22: -0.0564 S23: -0.2037 REMARK 3 S31: 0.4874 S32: 0.1170 S33: -0.0001 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.2385 -22.5284 -6.4100 REMARK 3 T TENSOR REMARK 3 T11: 0.2454 T22: 0.3840 REMARK 3 T33: 0.3135 T12: -0.0419 REMARK 3 T13: -0.0015 T23: -0.0879 REMARK 3 L TENSOR REMARK 3 L11: 0.1081 L22: 0.0306 REMARK 3 L33: 0.1199 L12: 0.1027 REMARK 3 L13: 0.1327 L23: 0.1116 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: 0.3784 S13: -0.4359 REMARK 3 S21: -0.2145 S22: -0.0225 S23: 0.1281 REMARK 3 S31: -0.1176 S32: -0.1685 S33: 0.0001 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2237 -19.9226 -5.9002 REMARK 3 T TENSOR REMARK 3 T11: 0.1543 T22: 0.5536 REMARK 3 T33: 0.3850 T12: -0.0392 REMARK 3 T13: 0.1179 T23: -0.1602 REMARK 3 L TENSOR REMARK 3 L11: 0.2203 L22: 0.0713 REMARK 3 L33: 0.9969 L12: -0.1639 REMARK 3 L13: 0.5930 L23: -0.2601 REMARK 3 S TENSOR REMARK 3 S11: -0.2604 S12: 0.7990 S13: -0.3724 REMARK 3 S21: -0.3601 S22: 0.2564 S23: -0.3261 REMARK 3 S31: -0.3401 S32: 0.0912 S33: -0.1694 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0326 -9.6293 1.8704 REMARK 3 T TENSOR REMARK 3 T11: 0.2843 T22: 0.3431 REMARK 3 T33: 0.3962 T12: 0.0484 REMARK 3 T13: 0.0616 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.0567 L22: 0.0114 REMARK 3 L33: 0.0241 L12: -0.0236 REMARK 3 L13: 0.0410 L23: -0.0060 REMARK 3 S TENSOR REMARK 3 S11: 0.1590 S12: -0.3237 S13: 0.3410 REMARK 3 S21: 0.1648 S22: 0.0444 S23: -0.2399 REMARK 3 S31: -0.2629 S32: -0.2946 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QQV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54709 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 57.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.65800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6NVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.27800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.09100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.87450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.09100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.27800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.87450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 ARG B 17 REMARK 465 GLN B 18 REMARK 465 SER B 19 REMARK 465 LEU B 20 REMARK 465 PRO B 21 REMARK 465 GLY B 22 REMARK 465 LYS B 23 REMARK 465 ALA B 24 REMARK 465 ILE B 25 REMARK 465 ASP B 26 REMARK 465 ALA B 27 REMARK 465 HIS B 45 REMARK 465 LYS B 46 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 14 CG CD OE1 NE2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 ASN A 162 CG OD1 ND2 REMARK 470 SER A 177 OG REMARK 470 GLU A 180 CD OE1 OE2 REMARK 470 ARG A 216 CD NE CZ NH1 NH2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 GLN B 14 CG CD OE1 NE2 REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 ASP B 31 CG OD1 OD2 REMARK 470 ARG B 39 NE CZ NH1 NH2 REMARK 470 HIS B 42 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 43 CG OD1 OD2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 SER B 47 OG REMARK 470 VAL B 159 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 39 O HOH A 401 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -130.58 55.95 REMARK 500 ARG A 125 -0.41 -140.92 REMARK 500 PRO B 15 2.04 -57.37 REMARK 500 TYR B 111 -133.79 56.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JEW A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JEW B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QQV A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QQV B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QQV GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QQV SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QQV GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QQV SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JEW A 301 24 HET SO4 B 301 5 HET SO4 B 302 5 HET JEW B 303 24 HETNAM JEW 2-[[6-(5-AZANYL-1~{H}-PYRAZOL-3-YL)INDOL-1- HETNAM 2 JEW YL]METHYL]BENZENECARBONITRILE HETNAM SO4 SULFATE ION FORMUL 3 JEW 2(C19 H15 N5) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *275(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 SER A 19 1 7 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 GLN A 116 ALA A 123 1 8 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 GLN B 14 5 6 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 GLN B 116 ALA B 123 1 8 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 196 SER B 201 5 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 3.46 CISPEP 2 ARG B 186 PRO B 187 0 1.94 SITE 1 AC1 17 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 17 ARG A 110 TYR A 111 GLU A 112 GLY A 113 SITE 3 AC1 17 SER A 132 ILE A 133 GLY A 134 TYR A 136 SITE 4 AC1 17 LEU A 138 ASN A 139 GLY A 140 GLY A 141 SITE 5 AC1 17 HOH A 514 SITE 1 AC2 9 ALA A 123 ARG A 125 MET A 126 THR A 185 SITE 2 AC2 9 ARG A 186 ASP B 50 SER B 51 TYR B 53 SITE 3 AC2 9 HOH B 404 SITE 1 AC3 3 ARG B 127 ARG B 129 HOH B 407 SITE 1 AC4 17 PRO B 83 THR B 84 PRO B 85 GLY B 109 SITE 2 AC4 17 ARG B 110 TYR B 111 GLU B 112 GLY B 113 SITE 3 AC4 17 SER B 132 ILE B 133 GLY B 134 TYR B 136 SITE 4 AC4 17 VAL B 137 LEU B 138 GLY B 140 GLY B 141 SITE 5 AC4 17 HOH B 472 CRYST1 74.556 77.749 86.182 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013413 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011603 0.00000