HEADER TRANSFERASE 19-FEB-19 6QQW TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 2 24-JAN-24 6QQW 1 REMARK REVDAT 1 18-SEP-19 6QQW 0 JRNL AUTH A.J.WHITEHOUSE,S.E.THOMAS,K.P.BROWN,A.FANOURAKIS,D.S.CHAN, JRNL AUTH 2 M.D.J.LIBARDO,V.MENDES,H.I.M.BOSHOFF,R.A.FLOTO,C.ABELL, JRNL AUTH 3 T.L.BLUNDELL,A.G.COYNE JRNL TITL DEVELOPMENT OF INHIBITORS AGAINSTMYCOBACTERIUM ABSCESSUSTRNA JRNL TITL 2 (M1G37) METHYLTRANSFERASE (TRMD) USING FRAGMENT-BASED JRNL TITL 3 APPROACHES. JRNL REF J.MED.CHEM. V. 62 7210 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31282680 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00809 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 2254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.3399 - 4.5315 1.00 3003 154 0.1570 0.1809 REMARK 3 2 4.5315 - 3.5984 1.00 2868 158 0.1486 0.1780 REMARK 3 3 3.5984 - 3.1440 1.00 2848 147 0.1785 0.2246 REMARK 3 4 3.1440 - 2.8568 1.00 2833 142 0.1937 0.2253 REMARK 3 5 2.8568 - 2.6521 1.00 2833 135 0.1965 0.2277 REMARK 3 6 2.6521 - 2.4959 1.00 2811 148 0.1871 0.2163 REMARK 3 7 2.4959 - 2.3709 1.00 2812 137 0.1757 0.2171 REMARK 3 8 2.3709 - 2.2677 1.00 2804 138 0.1755 0.2095 REMARK 3 9 2.2677 - 2.1804 1.00 2790 159 0.1827 0.2236 REMARK 3 10 2.1804 - 2.1052 1.00 2788 134 0.1893 0.2313 REMARK 3 11 2.1052 - 2.0394 1.00 2798 130 0.1967 0.2671 REMARK 3 12 2.0394 - 1.9811 1.00 2793 122 0.2086 0.2902 REMARK 3 13 1.9811 - 1.9290 1.00 2777 155 0.2083 0.2321 REMARK 3 14 1.9290 - 1.8819 1.00 2789 133 0.2318 0.2724 REMARK 3 15 1.8819 - 1.8391 1.00 2770 123 0.2736 0.3224 REMARK 3 16 1.8391 - 1.8000 1.00 2786 139 0.3090 0.3339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3305 REMARK 3 ANGLE : 0.996 4534 REMARK 3 CHIRALITY : 0.042 509 REMARK 3 PLANARITY : 0.005 585 REMARK 3 DIHEDRAL : 12.149 1193 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0974 13.2526 -22.4087 REMARK 3 T TENSOR REMARK 3 T11: 0.3954 T22: 0.4531 REMARK 3 T33: 0.2953 T12: -0.0197 REMARK 3 T13: 0.0082 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.2236 L22: 0.1876 REMARK 3 L33: 0.0977 L12: -0.1129 REMARK 3 L13: 0.0614 L23: -0.1335 REMARK 3 S TENSOR REMARK 3 S11: 0.0539 S12: 0.6997 S13: -0.1020 REMARK 3 S21: -0.5202 S22: -0.2396 S23: 0.2574 REMARK 3 S31: 0.1654 S32: -0.4838 S33: -0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.7345 14.4952 -19.6044 REMARK 3 T TENSOR REMARK 3 T11: 0.3679 T22: 0.4002 REMARK 3 T33: 0.3477 T12: -0.0165 REMARK 3 T13: -0.0669 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.4036 L22: 0.3860 REMARK 3 L33: 0.1796 L12: 0.6405 REMARK 3 L13: -0.0924 L23: -0.2149 REMARK 3 S TENSOR REMARK 3 S11: -0.1506 S12: 0.2468 S13: -0.1811 REMARK 3 S21: -0.2584 S22: 0.2108 S23: 0.4497 REMARK 3 S31: -0.0131 S32: -0.1999 S33: 0.0140 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.5555 17.4448 -6.3147 REMARK 3 T TENSOR REMARK 3 T11: 0.2487 T22: 0.2935 REMARK 3 T33: 0.3294 T12: -0.0090 REMARK 3 T13: 0.0058 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.9567 L22: 0.2646 REMARK 3 L33: 1.4444 L12: -0.1115 REMARK 3 L13: -0.6136 L23: -0.0247 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: 0.0092 S13: 0.0950 REMARK 3 S21: -0.0898 S22: 0.1037 S23: 0.0741 REMARK 3 S31: -0.0977 S32: -0.1106 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5695 10.4075 -9.7818 REMARK 3 T TENSOR REMARK 3 T11: 0.2919 T22: 0.2573 REMARK 3 T33: 0.2891 T12: -0.0151 REMARK 3 T13: 0.0019 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.9037 L22: 0.0791 REMARK 3 L33: 1.1931 L12: -0.0207 REMARK 3 L13: -0.6086 L23: -0.0908 REMARK 3 S TENSOR REMARK 3 S11: -0.0709 S12: -0.0710 S13: -0.0858 REMARK 3 S21: -0.0552 S22: 0.0400 S23: -0.0590 REMARK 3 S31: 0.1194 S32: 0.0535 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7639 5.3931 -23.0272 REMARK 3 T TENSOR REMARK 3 T11: 0.3191 T22: 0.3426 REMARK 3 T33: 0.2940 T12: -0.0344 REMARK 3 T13: -0.0085 T23: -0.0736 REMARK 3 L TENSOR REMARK 3 L11: 0.3588 L22: 0.3693 REMARK 3 L33: 0.6152 L12: 0.0434 REMARK 3 L13: -0.0372 L23: -0.5529 REMARK 3 S TENSOR REMARK 3 S11: 0.1130 S12: 0.5406 S13: -0.0397 REMARK 3 S21: -0.1379 S22: -0.0925 S23: -0.0270 REMARK 3 S31: 0.1154 S32: -0.0766 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3766 4.5912 -40.8735 REMARK 3 T TENSOR REMARK 3 T11: 0.4146 T22: 0.3235 REMARK 3 T33: 0.3172 T12: -0.0524 REMARK 3 T13: 0.0682 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.5746 L22: 0.3384 REMARK 3 L33: 0.0647 L12: -0.0682 REMARK 3 L13: 0.1917 L23: 0.0257 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: 0.0147 S13: 0.0644 REMARK 3 S21: -0.5530 S22: 0.2780 S23: -0.1227 REMARK 3 S31: -0.0591 S32: 0.1830 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7702 1.9563 -24.1332 REMARK 3 T TENSOR REMARK 3 T11: 0.2962 T22: 0.4068 REMARK 3 T33: 0.3081 T12: 0.0444 REMARK 3 T13: -0.0414 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 0.3285 L22: 0.2157 REMARK 3 L33: 0.3805 L12: 0.1193 REMARK 3 L13: -0.2647 L23: -0.2296 REMARK 3 S TENSOR REMARK 3 S11: -0.1103 S12: -0.1026 S13: 0.1076 REMARK 3 S21: 0.1471 S22: 0.1897 S23: -0.1444 REMARK 3 S31: 0.0985 S32: 0.3183 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2982 22.6658 -34.4335 REMARK 3 T TENSOR REMARK 3 T11: 0.4531 T22: 0.4425 REMARK 3 T33: 0.3879 T12: 0.0221 REMARK 3 T13: -0.0141 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.7590 L22: 0.3431 REMARK 3 L33: 0.5047 L12: -0.0867 REMARK 3 L13: -0.0957 L23: -0.1964 REMARK 3 S TENSOR REMARK 3 S11: 0.2350 S12: 0.2336 S13: 0.2033 REMARK 3 S21: -0.0598 S22: -0.1572 S23: 0.5545 REMARK 3 S31: -0.2692 S32: -0.6408 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8379 3.5555 -40.8803 REMARK 3 T TENSOR REMARK 3 T11: 0.3544 T22: 0.3140 REMARK 3 T33: 0.3365 T12: -0.0398 REMARK 3 T13: 0.0314 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 0.1126 L22: 0.0878 REMARK 3 L33: 0.0368 L12: -0.0496 REMARK 3 L13: -0.0366 L23: -0.0313 REMARK 3 S TENSOR REMARK 3 S11: -0.1665 S12: 0.1222 S13: -0.4994 REMARK 3 S21: 0.1252 S22: -0.0178 S23: 0.4842 REMARK 3 S31: 0.0589 S32: 0.0910 S33: -0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7645 20.1619 -29.6223 REMARK 3 T TENSOR REMARK 3 T11: 0.3727 T22: 0.2612 REMARK 3 T33: 0.2810 T12: -0.0478 REMARK 3 T13: 0.0128 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.1529 L22: 0.5982 REMARK 3 L33: 0.7977 L12: -0.2659 REMARK 3 L13: -0.5955 L23: 0.5214 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: 0.0640 S13: 0.1483 REMARK 3 S21: -0.2261 S22: 0.0640 S23: -0.0590 REMARK 3 S31: -0.1356 S32: 0.0059 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4381 18.0710 -32.6588 REMARK 3 T TENSOR REMARK 3 T11: 0.3398 T22: 0.3056 REMARK 3 T33: 0.3199 T12: -0.0802 REMARK 3 T13: 0.0423 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.0756 L22: 0.3186 REMARK 3 L33: 0.1146 L12: -0.1020 REMARK 3 L13: -0.0658 L23: -0.0908 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: -0.1048 S13: -0.0557 REMARK 3 S21: -0.2971 S22: 0.0602 S23: -0.0980 REMARK 3 S31: -0.0875 S32: 0.2776 S33: 0.0002 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3807 19.2470 -17.4041 REMARK 3 T TENSOR REMARK 3 T11: 0.2465 T22: 0.2697 REMARK 3 T33: 0.3072 T12: 0.0064 REMARK 3 T13: -0.0116 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.5408 L22: 0.4430 REMARK 3 L33: 0.5889 L12: 0.0337 REMARK 3 L13: -0.1566 L23: -0.5804 REMARK 3 S TENSOR REMARK 3 S11: -0.0214 S12: 0.0394 S13: 0.1181 REMARK 3 S21: -0.1150 S22: 0.0229 S23: -0.1009 REMARK 3 S31: -0.0511 S32: -0.1230 S33: -0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 184 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7418 22.5824 6.7438 REMARK 3 T TENSOR REMARK 3 T11: 0.3020 T22: 0.3899 REMARK 3 T33: 0.3477 T12: 0.0270 REMARK 3 T13: 0.0233 T23: -0.1158 REMARK 3 L TENSOR REMARK 3 L11: 0.2452 L22: 0.0362 REMARK 3 L33: 0.3069 L12: 0.0277 REMARK 3 L13: -0.0109 L23: 0.1337 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: -0.4865 S13: 0.5663 REMARK 3 S21: 0.2382 S22: 0.1739 S23: 0.2809 REMARK 3 S31: 0.1473 S32: -0.0939 S33: 0.0146 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6389 19.8209 6.0369 REMARK 3 T TENSOR REMARK 3 T11: 0.2766 T22: 0.6175 REMARK 3 T33: 0.3801 T12: 0.0466 REMARK 3 T13: -0.0639 T23: -0.1227 REMARK 3 L TENSOR REMARK 3 L11: 0.3565 L22: 0.1161 REMARK 3 L33: 0.2801 L12: -0.0474 REMARK 3 L13: -0.4156 L23: 0.0952 REMARK 3 S TENSOR REMARK 3 S11: -0.1621 S12: -0.7130 S13: 0.4287 REMARK 3 S21: 0.5109 S22: 0.2973 S23: -0.4730 REMARK 3 S31: 0.2524 S32: 0.1017 S33: -0.0047 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1427 9.6959 -1.6460 REMARK 3 T TENSOR REMARK 3 T11: 0.3256 T22: 0.3658 REMARK 3 T33: 0.4906 T12: -0.0452 REMARK 3 T13: -0.0325 T23: -0.0702 REMARK 3 L TENSOR REMARK 3 L11: 0.1391 L22: 0.0253 REMARK 3 L33: 0.0265 L12: 0.0273 REMARK 3 L13: -0.0690 L23: -0.0087 REMARK 3 S TENSOR REMARK 3 S11: -0.0884 S12: 0.3007 S13: -0.6364 REMARK 3 S21: -0.0550 S22: 0.2221 S23: -0.5627 REMARK 3 S31: 0.2040 S32: -0.4227 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47424 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 32.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 1.71300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 6NVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.26000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.98500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.26000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.98500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 ARG B 17 REMARK 465 GLN B 18 REMARK 465 SER B 19 REMARK 465 LEU B 20 REMARK 465 PRO B 21 REMARK 465 GLY B 22 REMARK 465 LYS B 23 REMARK 465 ALA B 24 REMARK 465 ILE B 25 REMARK 465 ASP B 26 REMARK 465 ALA B 27 REMARK 465 HIS B 42 REMARK 465 ASP B 43 REMARK 465 VAL B 44 REMARK 465 HIS B 45 REMARK 465 LYS B 46 REMARK 465 VAL B 159 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 14 CG CD OE1 NE2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 SER A 177 OG REMARK 470 LYS B 2 CE NZ REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 ASP B 31 CG OD1 OD2 REMARK 470 ARG B 39 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 77 OE1 OE2 REMARK 470 SER B 177 OG REMARK 470 ARG B 216 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -132.33 54.51 REMARK 500 PRO B 15 -5.99 -58.54 REMARK 500 TYR B 111 -132.56 52.44 REMARK 500 PRO B 157 106.70 -43.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JDQ A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JDQ B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QQW A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QQW B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QQW GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QQW SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QQW GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QQW SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JDQ A 301 22 HET JDQ B 301 22 HET SO4 B 302 5 HETNAM JDQ 3-[1-(PHENYLMETHYL)INDOL-6-YL]-1~{H}-PYRAZOL-5-AMINE HETNAM SO4 SULFATE ION FORMUL 3 JDQ 2(C18 H16 N4) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *200(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 LEU A 20 1 8 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 GLN A 116 ALA A 123 1 8 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 GLN B 14 5 6 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 GLN B 116 THR B 124 1 9 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 197 GLY B 202 1 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 2.07 CISPEP 2 ARG B 186 PRO B 187 0 0.04 SITE 1 AC1 16 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 16 ARG A 110 TYR A 111 GLU A 112 SER A 132 SITE 3 AC1 16 ILE A 133 GLY A 134 TYR A 136 VAL A 137 SITE 4 AC1 16 LEU A 138 ASN A 139 GLY A 140 GLY A 141 SITE 1 AC2 15 PRO B 83 THR B 84 PRO B 85 GLY B 109 SITE 2 AC2 15 ARG B 110 TYR B 111 GLU B 112 SER B 132 SITE 3 AC2 15 ILE B 133 GLY B 134 TYR B 136 VAL B 137 SITE 4 AC2 15 LEU B 138 GLY B 140 GLY B 141 SITE 1 AC3 2 ARG B 129 HOH B 405 CRYST1 74.520 77.970 86.500 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013419 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011561 0.00000