HEADER TRANSFERASE 19-FEB-19 6QR0 TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 2 24-JAN-24 6QR0 1 REMARK REVDAT 1 18-SEP-19 6QR0 0 JRNL AUTH A.J.WHITEHOUSE,S.E.THOMAS,K.P.BROWN,A.FANOURAKIS,D.S.CHAN, JRNL AUTH 2 M.D.J.LIBARDO,V.MENDES,H.I.M.BOSHOFF,R.A.FLOTO,C.ABELL, JRNL AUTH 3 T.L.BLUNDELL,A.G.COYNE JRNL TITL DEVELOPMENT OF INHIBITORS AGAINST MYCOBACTERIUM ABSCESSUS JRNL TITL 2 TRNA (M1G37) METHYLTRANSFERASE (TRMD) USING FRAGMENT-BASED JRNL TITL 3 APPROACHES. JRNL REF J.MED.CHEM. V. 62 7210 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31282680 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00809 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 68509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 3368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.8489 - 4.5856 1.00 2925 139 0.1615 0.1623 REMARK 3 2 4.5856 - 3.6399 1.00 2757 177 0.1431 0.1833 REMARK 3 3 3.6399 - 3.1799 1.00 2761 154 0.1667 0.1991 REMARK 3 4 3.1799 - 2.8891 1.00 2722 155 0.1866 0.2141 REMARK 3 5 2.8891 - 2.6821 1.00 2737 141 0.1921 0.2062 REMARK 3 6 2.6821 - 2.5239 1.00 2746 128 0.1847 0.2506 REMARK 3 7 2.5239 - 2.3975 1.00 2707 136 0.1699 0.1641 REMARK 3 8 2.3975 - 2.2932 1.00 2716 148 0.1662 0.1681 REMARK 3 9 2.2932 - 2.2049 1.00 2682 156 0.1629 0.2101 REMARK 3 10 2.2049 - 2.1288 1.00 2707 133 0.1758 0.1946 REMARK 3 11 2.1288 - 2.0622 1.00 2733 129 0.1738 0.2439 REMARK 3 12 2.0622 - 2.0033 1.00 2714 125 0.1779 0.1851 REMARK 3 13 2.0033 - 1.9505 1.00 2699 121 0.1742 0.2148 REMARK 3 14 1.9505 - 1.9029 1.00 2700 147 0.1857 0.2120 REMARK 3 15 1.9029 - 1.8597 1.00 2689 128 0.1834 0.2488 REMARK 3 16 1.8597 - 1.8201 1.00 2703 128 0.1910 0.2279 REMARK 3 17 1.8201 - 1.7837 1.00 2710 130 0.1923 0.2157 REMARK 3 18 1.7837 - 1.7500 1.00 2673 139 0.2080 0.2318 REMARK 3 19 1.7500 - 1.7188 1.00 2678 150 0.2250 0.2490 REMARK 3 20 1.7188 - 1.6896 1.00 2674 141 0.2357 0.2658 REMARK 3 21 1.6896 - 1.6624 1.00 2685 127 0.2434 0.2738 REMARK 3 22 1.6624 - 1.6368 1.00 2686 143 0.2574 0.2556 REMARK 3 23 1.6368 - 1.6127 1.00 2674 153 0.2800 0.2601 REMARK 3 24 1.6127 - 1.5900 1.00 2663 140 0.2894 0.3148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3338 REMARK 3 ANGLE : 1.052 4577 REMARK 3 CHIRALITY : 0.043 513 REMARK 3 PLANARITY : 0.006 590 REMARK 3 DIHEDRAL : 12.878 1201 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0635 13.0007 -22.5212 REMARK 3 T TENSOR REMARK 3 T11: 0.3446 T22: 0.3308 REMARK 3 T33: 0.2561 T12: 0.0083 REMARK 3 T13: 0.0003 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.0665 L22: 0.0390 REMARK 3 L33: 0.0694 L12: -0.0311 REMARK 3 L13: 0.0495 L23: -0.0544 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: 0.3923 S13: -0.0896 REMARK 3 S21: -0.4239 S22: -0.1879 S23: 0.0489 REMARK 3 S31: 0.1293 S32: -0.2078 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5121 18.6122 -14.2544 REMARK 3 T TENSOR REMARK 3 T11: 0.2645 T22: 0.2811 REMARK 3 T33: 0.3004 T12: 0.0098 REMARK 3 T13: -0.0191 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.5749 L22: 0.1970 REMARK 3 L33: 0.4253 L12: -0.0117 REMARK 3 L13: -0.2327 L23: -0.2524 REMARK 3 S TENSOR REMARK 3 S11: 0.0674 S12: 0.1543 S13: 0.0761 REMARK 3 S21: -0.2253 S22: 0.1099 S23: 0.0157 REMARK 3 S31: -0.2270 S32: -0.0454 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0737 10.0430 -11.1683 REMARK 3 T TENSOR REMARK 3 T11: 0.2277 T22: 0.2216 REMARK 3 T33: 0.2324 T12: -0.0147 REMARK 3 T13: -0.0061 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.6858 L22: 0.1800 REMARK 3 L33: 0.4900 L12: -0.0377 REMARK 3 L13: -0.1005 L23: -0.0343 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: -0.0128 S13: 0.0245 REMARK 3 S21: -0.0270 S22: 0.0524 S23: 0.0225 REMARK 3 S31: 0.0604 S32: -0.0184 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8709 -0.5944 -27.0096 REMARK 3 T TENSOR REMARK 3 T11: 0.5368 T22: 0.4232 REMARK 3 T33: 0.3720 T12: -0.0217 REMARK 3 T13: -0.0535 T23: -0.1357 REMARK 3 L TENSOR REMARK 3 L11: 0.0063 L22: -0.0024 REMARK 3 L33: 0.0071 L12: 0.0013 REMARK 3 L13: -0.0076 L23: -0.0055 REMARK 3 S TENSOR REMARK 3 S11: 0.0900 S12: 0.2844 S13: -0.1348 REMARK 3 S21: -0.1522 S22: -0.2718 S23: 0.2636 REMARK 3 S31: 0.1951 S32: -0.0120 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5265 4.8427 -39.4641 REMARK 3 T TENSOR REMARK 3 T11: 0.3278 T22: 0.3023 REMARK 3 T33: 0.2843 T12: -0.0428 REMARK 3 T13: 0.0451 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 0.0783 L22: 0.0989 REMARK 3 L33: 0.0176 L12: -0.0451 REMARK 3 L13: 0.0137 L23: 0.0245 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.1019 S13: 0.0923 REMARK 3 S21: -0.2425 S22: 0.1553 S23: -0.2444 REMARK 3 S31: -0.0723 S32: 0.1442 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7040 2.0960 -24.3066 REMARK 3 T TENSOR REMARK 3 T11: 0.2900 T22: 0.3579 REMARK 3 T33: 0.2868 T12: 0.0411 REMARK 3 T13: -0.0445 T23: -0.0468 REMARK 3 L TENSOR REMARK 3 L11: 0.1337 L22: 0.0685 REMARK 3 L33: 0.0484 L12: 0.0940 REMARK 3 L13: -0.0928 L23: -0.0319 REMARK 3 S TENSOR REMARK 3 S11: -0.0567 S12: -0.0716 S13: 0.1582 REMARK 3 S21: 0.2391 S22: 0.0741 S23: -0.2277 REMARK 3 S31: 0.2327 S32: 0.2667 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3039 22.8501 -34.4743 REMARK 3 T TENSOR REMARK 3 T11: 0.3851 T22: 0.3710 REMARK 3 T33: 0.3492 T12: 0.0057 REMARK 3 T13: -0.0301 T23: 0.0588 REMARK 3 L TENSOR REMARK 3 L11: 0.1681 L22: 0.1072 REMARK 3 L33: 0.0673 L12: -0.0983 REMARK 3 L13: 0.0326 L23: -0.0548 REMARK 3 S TENSOR REMARK 3 S11: 0.0759 S12: 0.2608 S13: 0.2980 REMARK 3 S21: 0.0487 S22: -0.0087 S23: 0.4853 REMARK 3 S31: -0.1499 S32: -0.3639 S33: -0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9665 3.7156 -40.9036 REMARK 3 T TENSOR REMARK 3 T11: 0.3154 T22: 0.2847 REMARK 3 T33: 0.2644 T12: -0.0159 REMARK 3 T13: 0.0217 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.0467 L22: 0.0301 REMARK 3 L33: 0.0277 L12: -0.0122 REMARK 3 L13: -0.0104 L23: 0.0357 REMARK 3 S TENSOR REMARK 3 S11: -0.1337 S12: 0.0164 S13: -0.1373 REMARK 3 S21: -0.0136 S22: 0.0862 S23: 0.3047 REMARK 3 S31: -0.0208 S32: -0.0125 S33: -0.0003 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9871 20.3054 -29.6844 REMARK 3 T TENSOR REMARK 3 T11: 0.3227 T22: 0.2416 REMARK 3 T33: 0.2645 T12: -0.0447 REMARK 3 T13: 0.0218 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.5382 L22: 0.1119 REMARK 3 L33: 0.3066 L12: -0.2210 REMARK 3 L13: -0.2415 L23: 0.1172 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.0347 S13: 0.0899 REMARK 3 S21: -0.1886 S22: 0.0389 S23: -0.0826 REMARK 3 S31: -0.1970 S32: 0.0384 S33: -0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6156 18.6294 -32.9508 REMARK 3 T TENSOR REMARK 3 T11: 0.3059 T22: 0.2937 REMARK 3 T33: 0.3060 T12: -0.0920 REMARK 3 T13: 0.0392 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.0070 L22: 0.0307 REMARK 3 L33: 0.0082 L12: -0.0238 REMARK 3 L13: 0.0079 L23: -0.0112 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: -0.0429 S13: 0.0407 REMARK 3 S21: -0.1505 S22: 0.1525 S23: -0.1241 REMARK 3 S31: -0.0575 S32: 0.3503 S33: 0.0005 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0389 17.0934 -22.0302 REMARK 3 T TENSOR REMARK 3 T11: 0.2375 T22: 0.2396 REMARK 3 T33: 0.2586 T12: -0.0112 REMARK 3 T13: -0.0030 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.1340 L22: 0.0652 REMARK 3 L33: 0.0924 L12: 0.0363 REMARK 3 L13: -0.0629 L23: -0.0914 REMARK 3 S TENSOR REMARK 3 S11: -0.0124 S12: 0.1094 S13: 0.1041 REMARK 3 S21: -0.0530 S22: -0.0316 S23: -0.0119 REMARK 3 S31: -0.0164 S32: -0.1041 S33: -0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5478 25.3309 -7.2879 REMARK 3 T TENSOR REMARK 3 T11: 0.3232 T22: 0.3227 REMARK 3 T33: 0.4416 T12: -0.0415 REMARK 3 T13: -0.0315 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.0319 L22: 0.0819 REMARK 3 L33: 0.0302 L12: 0.0290 REMARK 3 L13: -0.0004 L23: 0.0236 REMARK 3 S TENSOR REMARK 3 S11: -0.1151 S12: -0.0898 S13: 0.1047 REMARK 3 S21: -0.1365 S22: 0.0392 S23: -0.1237 REMARK 3 S31: -0.2393 S32: 0.0693 S33: -0.0006 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5116 22.2837 6.4071 REMARK 3 T TENSOR REMARK 3 T11: 0.2789 T22: 0.3544 REMARK 3 T33: 0.2958 T12: 0.0228 REMARK 3 T13: 0.0268 T23: -0.0642 REMARK 3 L TENSOR REMARK 3 L11: 0.1007 L22: 0.0374 REMARK 3 L33: 0.0679 L12: -0.0645 REMARK 3 L13: -0.0728 L23: 0.0224 REMARK 3 S TENSOR REMARK 3 S11: 0.0564 S12: -0.3744 S13: 0.2660 REMARK 3 S21: 0.2119 S22: 0.0062 S23: 0.1582 REMARK 3 S31: 0.2319 S32: 0.0179 S33: -0.0001 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4055 19.2080 6.2166 REMARK 3 T TENSOR REMARK 3 T11: 0.2663 T22: 0.5612 REMARK 3 T33: 0.3546 T12: 0.0104 REMARK 3 T13: -0.0609 T23: -0.0917 REMARK 3 L TENSOR REMARK 3 L11: 0.0818 L22: 0.0102 REMARK 3 L33: 0.3031 L12: -0.0242 REMARK 3 L13: -0.1724 L23: 0.0535 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: -0.4945 S13: 0.2303 REMARK 3 S21: 0.2686 S22: -0.0226 S23: -0.1213 REMARK 3 S31: 0.1400 S32: -0.0728 S33: -0.0062 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3138 8.8886 -1.8462 REMARK 3 T TENSOR REMARK 3 T11: 0.3062 T22: 0.3319 REMARK 3 T33: 0.4049 T12: -0.0272 REMARK 3 T13: -0.0553 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 0.0448 L22: 0.0119 REMARK 3 L33: 0.0209 L12: -0.0188 REMARK 3 L13: -0.0193 L23: -0.0040 REMARK 3 S TENSOR REMARK 3 S11: 0.0728 S12: 0.2050 S13: -0.2186 REMARK 3 S21: -0.0950 S22: 0.0442 S23: -0.1572 REMARK 3 S31: 0.1811 S32: -0.1900 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100709. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68585 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 56.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 1.58100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 6NVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.46000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.57500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.57500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.46000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 ARG B 17 REMARK 465 GLN B 18 REMARK 465 SER B 19 REMARK 465 LEU B 20 REMARK 465 PRO B 21 REMARK 465 GLY B 22 REMARK 465 LYS B 23 REMARK 465 ALA B 24 REMARK 465 ILE B 25 REMARK 465 ASP B 26 REMARK 465 ALA B 27 REMARK 465 HIS B 42 REMARK 465 ASP B 43 REMARK 465 VAL B 44 REMARK 465 HIS B 45 REMARK 465 LYS B 46 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLN A 14 CG CD OE1 NE2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 GLU A 93 CD OE1 OE2 REMARK 470 SER A 177 OG REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 GLN B 14 CG CD OE1 NE2 REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 ARG B 39 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 159 CG1 CG2 REMARK 470 SER B 177 OG REMARK 470 THR B 233 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 216 O THR B 100 3544 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -131.92 59.50 REMARK 500 TYR B 111 -132.61 54.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JFB A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JFB B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QR0 A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QR0 B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QR0 GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QR0 SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QR0 GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QR0 SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JFB A 301 24 HET SO4 A 302 5 HET JFB B 301 24 HETNAM JFB 5-AZANYL-3-[1-(PYRIDIN-4-YLMETHYL)INDOL-6-YL]-1~{H}- HETNAM 2 JFB PYRAZOLE-4-CARBONITRILE HETNAM SO4 SULFATE ION FORMUL 3 JFB 2(C18 H14 N6) FORMUL 4 SO4 O4 S 2- FORMUL 6 HOH *302(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 LEU A 20 1 8 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 ASP A 115 ALA A 123 1 9 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 GLN B 14 5 6 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 GLN B 116 THR B 124 1 9 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 197 GLY B 202 1 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 4.35 CISPEP 2 ARG B 186 PRO B 187 0 1.69 SITE 1 AC1 19 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 19 ARG A 110 TYR A 111 GLU A 112 VAL A 131 SITE 3 AC1 19 SER A 132 ILE A 133 GLY A 134 TYR A 136 SITE 4 AC1 19 VAL A 137 LEU A 138 ASN A 139 GLY A 140 SITE 5 AC1 19 GLY A 141 ALA A 144 GLU B 180 SITE 1 AC2 10 ALA A 123 ARG A 125 MET A 126 ARG A 127 SITE 2 AC2 10 THR A 185 ARG A 186 HOH A 414 ASP B 50 SITE 3 AC2 10 SER B 51 TYR B 53 SITE 1 AC3 19 GLU A 180 PRO B 83 THR B 84 PRO B 85 SITE 2 AC3 19 GLY B 109 ARG B 110 TYR B 111 GLU B 112 SITE 3 AC3 19 VAL B 131 SER B 132 ILE B 133 GLY B 134 SITE 4 AC3 19 TYR B 136 VAL B 137 LEU B 138 ASN B 139 SITE 5 AC3 19 GLY B 140 GLY B 141 ALA B 144 CRYST1 74.920 77.170 87.150 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013348 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011474 0.00000