HEADER TRANSFERASE 19-FEB-19 6QRD TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 2 24-JAN-24 6QRD 1 REMARK REVDAT 1 18-SEP-19 6QRD 0 JRNL AUTH A.J.WHITEHOUSE,S.E.THOMAS,K.P.BROWN,A.FANOURAKIS,D.S.CHAN, JRNL AUTH 2 M.D.J.LIBARDO,V.MENDES,H.I.M.BOSHOFF,R.A.FLOTO,C.ABELL, JRNL AUTH 3 T.L.BLUNDELL,A.G.COYNE JRNL TITL DEVELOPMENT OF INHIBITORS AGAINSTMYCOBACTERIUM ABSCESSUSTRNA JRNL TITL 2 (M1G37) METHYLTRANSFERASE (TRMD) USING FRAGMENT-BASED JRNL TITL 3 APPROACHES. JRNL REF J.MED.CHEM. V. 62 7210 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31282680 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00809 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 51011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.5366 - 4.5831 1.00 2895 145 0.1631 0.1855 REMARK 3 2 4.5831 - 3.6380 1.00 2761 137 0.1467 0.1597 REMARK 3 3 3.6380 - 3.1782 1.00 2755 134 0.1688 0.2226 REMARK 3 4 3.1782 - 2.8876 1.00 2678 165 0.1886 0.2348 REMARK 3 5 2.8876 - 2.6806 1.00 2692 155 0.1863 0.2448 REMARK 3 6 2.6806 - 2.5226 1.00 2711 126 0.1799 0.2466 REMARK 3 7 2.5226 - 2.3963 1.00 2677 149 0.1785 0.2010 REMARK 3 8 2.3963 - 2.2920 1.00 2685 133 0.1719 0.2281 REMARK 3 9 2.2920 - 2.2037 1.00 2676 147 0.1717 0.2040 REMARK 3 10 2.2037 - 2.1277 1.00 2661 140 0.1754 0.2371 REMARK 3 11 2.1277 - 2.0611 1.00 2660 155 0.1735 0.2073 REMARK 3 12 2.0611 - 2.0022 1.00 2677 144 0.1730 0.1884 REMARK 3 13 2.0022 - 1.9495 1.00 2665 133 0.1624 0.2269 REMARK 3 14 1.9495 - 1.9019 1.00 2638 154 0.1644 0.2085 REMARK 3 15 1.9019 - 1.8587 1.00 2671 135 0.1648 0.1963 REMARK 3 16 1.8587 - 1.8192 1.00 2652 129 0.1700 0.2178 REMARK 3 17 1.8192 - 1.7828 1.00 2674 126 0.1693 0.2009 REMARK 3 18 1.7828 - 1.7491 1.00 2643 133 0.1909 0.2422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3395 REMARK 3 ANGLE : 1.109 4661 REMARK 3 CHIRALITY : 0.041 511 REMARK 3 PLANARITY : 0.006 590 REMARK 3 DIHEDRAL : 16.627 1222 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0592 -13.1021 22.5159 REMARK 3 T TENSOR REMARK 3 T11: 0.3567 T22: 0.3331 REMARK 3 T33: 0.2370 T12: -0.0006 REMARK 3 T13: -0.0283 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.2319 L22: 0.1613 REMARK 3 L33: 0.1239 L12: 0.0294 REMARK 3 L13: -0.0751 L23: -0.1450 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: -0.5179 S13: 0.0287 REMARK 3 S21: 0.6338 S22: -0.1868 S23: 0.0553 REMARK 3 S31: -0.1797 S32: -0.2765 S33: -0.0014 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.4966 -18.6784 14.1852 REMARK 3 T TENSOR REMARK 3 T11: 0.2072 T22: 0.2441 REMARK 3 T33: 0.2579 T12: -0.0127 REMARK 3 T13: 0.0097 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.1522 L22: 0.3485 REMARK 3 L33: 0.7202 L12: -0.1800 REMARK 3 L13: 0.4008 L23: -0.4519 REMARK 3 S TENSOR REMARK 3 S11: 0.1050 S12: -0.1035 S13: -0.0943 REMARK 3 S21: 0.2134 S22: 0.1050 S23: -0.0360 REMARK 3 S31: 0.1962 S32: -0.1852 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1213 -10.0932 11.1629 REMARK 3 T TENSOR REMARK 3 T11: 0.2099 T22: 0.2000 REMARK 3 T33: 0.2225 T12: 0.0144 REMARK 3 T13: -0.0030 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.1591 L22: 0.0392 REMARK 3 L33: 0.8167 L12: 0.0230 REMARK 3 L13: 0.2467 L23: -0.0541 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.0224 S13: 0.0023 REMARK 3 S21: 0.0175 S22: 0.0671 S23: 0.0026 REMARK 3 S31: -0.0638 S32: -0.0383 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3863 -0.6995 25.3162 REMARK 3 T TENSOR REMARK 3 T11: 0.4498 T22: 0.3424 REMARK 3 T33: 0.3479 T12: 0.0643 REMARK 3 T13: 0.0764 T23: -0.0888 REMARK 3 L TENSOR REMARK 3 L11: 0.0028 L22: 0.1760 REMARK 3 L33: 0.0124 L12: 0.0051 REMARK 3 L13: 0.0052 L23: -0.0601 REMARK 3 S TENSOR REMARK 3 S11: 0.4745 S12: -0.4270 S13: 0.4775 REMARK 3 S21: 0.0261 S22: -0.3684 S23: 0.0700 REMARK 3 S31: -0.4504 S32: 0.0127 S33: 0.0276 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3406 -4.9392 41.0477 REMARK 3 T TENSOR REMARK 3 T11: 0.3250 T22: 0.2885 REMARK 3 T33: 0.3049 T12: 0.0423 REMARK 3 T13: -0.0479 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 0.1209 L22: 0.1251 REMARK 3 L33: 0.1337 L12: 0.0903 REMARK 3 L13: -0.0547 L23: 0.0756 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: 0.0246 S13: -0.2131 REMARK 3 S21: 0.3491 S22: 0.1922 S23: -0.2744 REMARK 3 S31: 0.0519 S32: 0.1676 S33: -0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6796 -2.0793 24.1992 REMARK 3 T TENSOR REMARK 3 T11: 0.2582 T22: 0.3230 REMARK 3 T33: 0.2483 T12: -0.0441 REMARK 3 T13: 0.0474 T23: -0.0511 REMARK 3 L TENSOR REMARK 3 L11: 0.2752 L22: 0.1330 REMARK 3 L33: 0.1252 L12: -0.1249 REMARK 3 L13: 0.1862 L23: -0.0341 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: 0.0485 S13: -0.0624 REMARK 3 S21: -0.1927 S22: 0.0632 S23: -0.1089 REMARK 3 S31: -0.1649 S32: 0.1440 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6143 -22.5265 34.2693 REMARK 3 T TENSOR REMARK 3 T11: 0.3480 T22: 0.3628 REMARK 3 T33: 0.3147 T12: -0.0027 REMARK 3 T13: 0.0351 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 0.2681 L22: 0.2115 REMARK 3 L33: 0.1971 L12: 0.0822 REMARK 3 L13: -0.0892 L23: -0.2136 REMARK 3 S TENSOR REMARK 3 S11: -0.0548 S12: -0.2705 S13: -0.3062 REMARK 3 S21: 0.2175 S22: 0.0419 S23: 0.4099 REMARK 3 S31: 0.2700 S32: -0.3236 S33: 0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5734 -5.0874 42.5228 REMARK 3 T TENSOR REMARK 3 T11: 0.3057 T22: 0.2597 REMARK 3 T33: 0.2792 T12: 0.0387 REMARK 3 T13: -0.0105 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.1445 L22: 0.0916 REMARK 3 L33: 0.1183 L12: 0.0589 REMARK 3 L13: 0.0618 L23: 0.1189 REMARK 3 S TENSOR REMARK 3 S11: -0.1012 S12: -0.1328 S13: 0.1677 REMARK 3 S21: -0.0707 S22: 0.0615 S23: 0.4269 REMARK 3 S31: 0.1795 S32: 0.0754 S33: -0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9867 -20.1232 29.6449 REMARK 3 T TENSOR REMARK 3 T11: 0.2863 T22: 0.2336 REMARK 3 T33: 0.2489 T12: 0.0464 REMARK 3 T13: -0.0350 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.7555 L22: 0.4541 REMARK 3 L33: 0.5382 L12: 0.2903 REMARK 3 L13: 0.2250 L23: 0.2199 REMARK 3 S TENSOR REMARK 3 S11: 0.0252 S12: -0.0463 S13: -0.0949 REMARK 3 S21: 0.1700 S22: 0.0492 S23: -0.1181 REMARK 3 S31: 0.1287 S32: 0.0479 S33: -0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4902 -18.4664 32.9105 REMARK 3 T TENSOR REMARK 3 T11: 0.3103 T22: 0.2802 REMARK 3 T33: 0.2878 T12: 0.1006 REMARK 3 T13: -0.0624 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 0.0070 L22: 0.1125 REMARK 3 L33: 0.0860 L12: -0.0104 REMARK 3 L13: -0.0322 L23: 0.0973 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: 0.1134 S13: -0.0091 REMARK 3 S21: 0.2223 S22: 0.2213 S23: -0.1721 REMARK 3 S31: 0.0250 S32: 0.4201 S33: 0.0021 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3926 -19.0808 17.5136 REMARK 3 T TENSOR REMARK 3 T11: 0.2202 T22: 0.2256 REMARK 3 T33: 0.2590 T12: 0.0070 REMARK 3 T13: -0.0002 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.6305 L22: 0.2416 REMARK 3 L33: 0.3894 L12: -0.1155 REMARK 3 L13: 0.0396 L23: -0.3169 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: -0.0724 S13: -0.0556 REMARK 3 S21: 0.0527 S22: 0.0446 S23: -0.0969 REMARK 3 S31: 0.0270 S32: -0.0202 S33: -0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 184 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.8275 -22.2817 -6.8318 REMARK 3 T TENSOR REMARK 3 T11: 0.2899 T22: 0.3429 REMARK 3 T33: 0.2887 T12: -0.0227 REMARK 3 T13: -0.0256 T23: -0.0680 REMARK 3 L TENSOR REMARK 3 L11: 0.1656 L22: 0.1118 REMARK 3 L33: 0.1324 L12: 0.0566 REMARK 3 L13: 0.1332 L23: 0.1202 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: 0.3379 S13: -0.3445 REMARK 3 S21: -0.2076 S22: 0.0688 S23: 0.2040 REMARK 3 S31: -0.1615 S32: -0.0640 S33: 0.0024 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4890 -19.4269 -5.7548 REMARK 3 T TENSOR REMARK 3 T11: 0.2181 T22: 0.5565 REMARK 3 T33: 0.3487 T12: -0.0306 REMARK 3 T13: 0.0547 T23: -0.1013 REMARK 3 L TENSOR REMARK 3 L11: 0.2320 L22: 0.0479 REMARK 3 L33: 0.6898 L12: -0.0445 REMARK 3 L13: 0.4307 L23: -0.0027 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: 0.5328 S13: -0.2489 REMARK 3 S21: -0.3169 S22: 0.0873 S23: -0.2382 REMARK 3 S31: -0.2902 S32: 0.0045 S33: -0.0154 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3032 -9.4753 1.8180 REMARK 3 T TENSOR REMARK 3 T11: 0.2814 T22: 0.3268 REMARK 3 T33: 0.3918 T12: 0.0163 REMARK 3 T13: 0.0524 T23: -0.0558 REMARK 3 L TENSOR REMARK 3 L11: 0.0835 L22: 0.0117 REMARK 3 L33: 0.0242 L12: 0.0050 REMARK 3 L13: 0.0460 L23: -0.0038 REMARK 3 S TENSOR REMARK 3 S11: 0.1490 S12: -0.3627 S13: 0.2854 REMARK 3 S21: 0.0062 S22: -0.1912 S23: -0.3366 REMARK 3 S31: 0.0119 S32: -0.4013 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QRD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100749. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51077 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 53.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 0.37500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6NVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.26600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.39350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.43800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.39350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.26600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.43800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 ARG B 17 REMARK 465 GLN B 18 REMARK 465 SER B 19 REMARK 465 LEU B 20 REMARK 465 PRO B 21 REMARK 465 GLY B 22 REMARK 465 LYS B 23 REMARK 465 ALA B 24 REMARK 465 ILE B 25 REMARK 465 ASP B 26 REMARK 465 ALA B 27 REMARK 465 HIS B 45 REMARK 465 LYS B 46 REMARK 465 VAL B 159 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLN A 14 CG CD OE1 NE2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 SER A 177 OG REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 ARG B 39 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 43 CG OD1 OD2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 GLU B 77 CD OE1 OE2 REMARK 470 LYS B 206 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -134.04 56.46 REMARK 500 PRO B 15 3.53 -61.03 REMARK 500 TYR B 111 -133.10 51.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JEH A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JEH B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QRD A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QRD B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QRD GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QRD SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QRD GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QRD SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET SO4 A 301 5 HET SO4 A 302 5 HET JEH A 303 34 HET SO4 B 301 5 HET JEH B 302 34 HETNAM SO4 SULFATE ION HETNAM JEH 5-AZANYL-3-[1-[[4-[(4-PROPAN-2-YLPIPERAZIN-1-YL) HETNAM 2 JEH METHYL]PHENYL]METHYL]INDOL-6-YL]-1~{H}-PYRAZOLE-4- HETNAM 3 JEH CARBONITRILE FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 JEH 2(C27 H31 N7) FORMUL 8 HOH *266(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 LEU A 20 1 8 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 GLN A 116 ALA A 123 1 8 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 GLN B 14 5 6 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 GLN B 116 THR B 124 1 9 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 196 SER B 201 5 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 2.76 CISPEP 2 ARG B 186 PRO B 187 0 1.14 SITE 1 AC1 9 ALA A 123 ARG A 125 MET A 126 THR A 185 SITE 2 AC1 9 ARG A 186 HOH A 417 ASP B 50 SER B 51 SITE 3 AC1 9 TYR B 53 SITE 1 AC2 5 ARG A 127 ARG A 186 HOH A 407 HOH A 498 SITE 2 AC2 5 LYS B 62 SITE 1 AC3 19 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC3 19 ARG A 110 TYR A 111 VAL A 131 SER A 132 SITE 3 AC3 19 ILE A 133 GLY A 134 TYR A 136 VAL A 137 SITE 4 AC3 19 LEU A 138 ASN A 139 GLY A 140 GLY A 141 SITE 5 AC3 19 ALA A 144 LEU B 178 GLU B 180 SITE 1 AC4 2 ARG B 129 HOH B 403 SITE 1 AC5 18 LEU A 178 PRO B 83 THR B 84 PRO B 85 SITE 2 AC5 18 GLY B 109 ARG B 110 TYR B 111 GLU B 112 SITE 3 AC5 18 VAL B 131 SER B 132 ILE B 133 GLY B 134 SITE 4 AC5 18 TYR B 136 LEU B 138 ASN B 139 GLY B 140 SITE 5 AC5 18 GLY B 141 ALA B 144 CRYST1 74.532 76.876 86.787 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013417 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011522 0.00000