HEADER SIGNALING PROTEIN 19-FEB-19 6QRJ TITLE CRYSTAL STRUCTURE OF SHKA FULL-LENGTH IN COMPLEX WITH AMPPNP CAVEAT 6QRJ ALA A 146 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYBRID KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SENSOR HISTIDINE KINASE/RESPONSE REGULATOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER VIBRIOIDES CB15; SOURCE 3 ORGANISM_TAXID: 190650; SOURCE 4 GENE: SHKA, CC_0138, CC0138; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYCLIC DI-GMP, SECOND MESSENGER, HYBRIDE HISTIDINE KINASE, SHKA, KEYWDS 2 AUTO-INHIBITIO, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.N.DUBEY,T.SCHIRMER REVDAT 3 24-JAN-24 6QRJ 1 REMARK REVDAT 2 22-JAN-20 6QRJ 1 JRNL REVDAT 1 08-JAN-20 6QRJ 0 JRNL AUTH B.N.DUBEY,E.AGUSTONI,R.BOHM,A.KACZMARCZYK,F.MANGIA, JRNL AUTH 2 C.VON ARX,U.JENAL,S.HILLER,I.PLAZA-MENACHO,T.SCHIRMER JRNL TITL HYBRID HISTIDINE KINASE ACTIVATION BY CYCLIC DI-GMP-MEDIATED JRNL TITL 2 DOMAIN LIBERATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 1000 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 31882446 JRNL DOI 10.1073/PNAS.1911427117 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 16013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 843 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1143 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3383 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.712 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.343 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.363 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 41.842 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3462 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3405 ; 0.004 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4710 ; 1.925 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7808 ; 1.302 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 459 ; 9.621 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;33.129 ;19.708 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 543 ;21.481 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;18.966 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 472 ; 0.229 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3941 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 732 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1917 -19.4090 -4.0255 REMARK 3 T TENSOR REMARK 3 T11: 0.3192 T22: 0.3409 REMARK 3 T33: 0.0711 T12: -0.0105 REMARK 3 T13: 0.0720 T23: 0.0667 REMARK 3 L TENSOR REMARK 3 L11: 2.9944 L22: 6.8246 REMARK 3 L33: 4.3131 L12: 0.6085 REMARK 3 L13: 1.2189 L23: 1.7451 REMARK 3 S TENSOR REMARK 3 S11: -0.1904 S12: 0.0607 S13: 0.0368 REMARK 3 S21: -0.0898 S22: 0.3460 S23: 0.4892 REMARK 3 S31: -0.2720 S32: -0.3936 S33: -0.1556 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 240 REMARK 3 RESIDUE RANGE : A 602 A 602 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3146 -34.6640 -26.3011 REMARK 3 T TENSOR REMARK 3 T11: 0.3134 T22: 0.1922 REMARK 3 T33: 0.0127 T12: -0.1759 REMARK 3 T13: 0.0060 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 4.3083 L22: 4.2310 REMARK 3 L33: 5.1745 L12: 0.3893 REMARK 3 L13: -0.7565 L23: -1.5021 REMARK 3 S TENSOR REMARK 3 S11: -0.1229 S12: 0.1381 S13: -0.1045 REMARK 3 S21: 0.2210 S22: 0.1301 S23: -0.0948 REMARK 3 S31: 0.8190 S32: -0.4716 S33: -0.0071 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 241 A 339 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3769 -20.0159 -48.9584 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.3538 REMARK 3 T33: 0.1153 T12: -0.0344 REMARK 3 T13: 0.0625 T23: 0.1365 REMARK 3 L TENSOR REMARK 3 L11: 3.0488 L22: 5.1749 REMARK 3 L33: 5.6842 L12: -0.2503 REMARK 3 L13: -0.2715 L23: -1.5945 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: 0.4444 S13: 0.0809 REMARK 3 S21: -0.5189 S22: -0.2105 S23: -0.2571 REMARK 3 S31: 0.3047 S32: -0.2009 S33: 0.1866 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 340 A 602 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0001 -12.7423 -22.9178 REMARK 3 T TENSOR REMARK 3 T11: 0.4847 T22: 0.7965 REMARK 3 T33: 0.1641 T12: -0.0379 REMARK 3 T13: 0.0040 T23: 0.1452 REMARK 3 L TENSOR REMARK 3 L11: 3.3272 L22: 2.4727 REMARK 3 L33: 0.2574 L12: -1.9344 REMARK 3 L13: 0.0318 L23: 0.5324 REMARK 3 S TENSOR REMARK 3 S11: -0.4300 S12: -0.4840 S13: 0.2548 REMARK 3 S21: 0.3608 S22: 0.2986 S23: 0.2135 REMARK 3 S31: -0.0484 S32: -0.0777 S33: 0.1314 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6QRJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17058 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.01000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.03 REMARK 200 R MERGE FOR SHELL (I) : 0.01000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4Q20 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DL-SERINE, 0.1M SODIUM HEPES PH REMARK 280 7.5, MOPS (ACID), 40% V/V ETHYLENE GLYCOL AND 20% W/V PEG 8000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.10450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 195.15675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.05225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 130.10450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.05225 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 195.15675 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 189 REMARK 465 THR A 190 REMARK 465 HIS A 191 REMARK 465 ALA A 192 REMARK 465 THR A 193 REMARK 465 GLN A 194 REMARK 465 LEU A 195 REMARK 465 GLY A 196 REMARK 465 THR A 357 REMARK 465 ALA A 358 REMARK 465 ASP A 359 REMARK 465 GLY A 360 REMARK 465 VAL A 361 REMARK 465 ALA A 362 REMARK 465 GLU A 363 REMARK 465 ASP A 364 REMARK 465 ASP A 460 REMARK 465 ALA A 461 REMARK 465 PHE A 462 REMARK 465 ASP A 463 REMARK 465 GLU A 464 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 13 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 290 NH1 ARG A 313 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR A 236 O THR A 236 8444 1.52 REMARK 500 NE2 GLN A 48 NE2 GLN A 48 5555 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 37 -74.22 -47.79 REMARK 500 ASN A 41 40.80 -88.13 REMARK 500 LEU A 44 -121.65 -133.39 REMARK 500 THR A 45 159.94 178.64 REMARK 500 ALA A 46 135.93 -32.80 REMARK 500 GLU A 47 -67.40 71.48 REMARK 500 THR A 53 -70.77 -52.71 REMARK 500 ALA A 146 -82.65 -114.55 REMARK 500 THR A 168 37.49 -84.11 REMARK 500 GLN A 186 -158.29 -128.84 REMARK 500 GLU A 221 134.92 -170.70 REMARK 500 PRO A 240 50.59 -56.99 REMARK 500 LEU A 241 131.92 -36.45 REMARK 500 ALA A 243 108.97 -44.99 REMARK 500 ARG A 249 150.93 -49.32 REMARK 500 ALA A 265 -83.99 -46.91 REMARK 500 ARG A 266 -33.84 -33.94 REMARK 500 LEU A 353 17.24 -68.53 REMARK 500 GLN A 354 52.83 -111.57 REMARK 500 ASP A 369 133.84 -28.71 REMARK 500 VAL A 376 -66.39 -123.22 REMARK 500 SER A 420 -75.51 -89.87 REMARK 500 ALA A 421 -37.05 -36.99 REMARK 500 LEU A 431 -61.70 -98.74 REMARK 500 THR A 437 141.56 -38.37 REMARK 500 ALA A 442 -80.70 -63.45 REMARK 500 ARG A 443 -49.15 -11.88 REMARK 500 LEU A 470 -73.98 -55.71 REMARK 500 GLN A 484 -65.41 -22.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 45 ALA A 46 149.14 REMARK 500 ALA A 78 ALA A 79 148.76 REMARK 500 LEU A 241 ARG A 242 -145.58 REMARK 500 GLN A 354 ALA A 355 144.65 REMARK 500 ALA A 377 SER A 378 141.38 REMARK 500 LEU A 457 THR A 458 149.09 REMARK 500 ASP A 465 ARG A 466 -140.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 139 OD1 REMARK 620 2 ANP A 601 O3G 129.2 REMARK 620 3 ANP A 601 O1B 87.5 73.5 REMARK 620 4 ANP A 601 O2A 64.8 65.3 57.0 REMARK 620 5 HOH A 701 O 72.9 67.6 104.8 48.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 DBREF 6QRJ A 13 496 UNP Q9ABT2 Q9ABT2_CAUVC 13 496 SEQRES 1 A 484 VAL THR PRO GLU GLN LEU ALA THR LEU SER HIS GLU PHE SEQRES 2 A 484 ARG THR PRO LEU ASN GLY VAL LEU GLY MET ALA ARG LEU SEQRES 3 A 484 LEU GLU ASN THR LYS LEU THR ALA GLU GLN ARG SER TYR SEQRES 4 A 484 VAL THR ALA LEU ARG GLU SER GLY ASP HIS LEU LEU SER SEQRES 5 A 484 LEU VAL ASN ASP VAL LEU HIS PHE ALA ARG LEU GLY ALA SEQRES 6 A 484 ALA ALA ILE GLU LEU SER LEU ALA PRO VAL ASP ILE GLU SEQRES 7 A 484 GLY LEU LEU ARG GLN VAL ALA GLU LEU MET SER PRO ARG SEQRES 8 A 484 ALA HIS GLU LYS GLY ILE GLU ILE ALA TRP ALA VAL SER SEQRES 9 A 484 SER PRO LEU PRO THR ILE LEU ALA ASP GLU GLY ARG LEU SEQRES 10 A 484 ARG GLN ILE LEU LEU ASN PHE ALA GLY ASN ALA VAL LYS SEQRES 11 A 484 PHE THR GLU ALA GLY GLY VAL LEU LEU THR ALA SER ALA SEQRES 12 A 484 ILE ASP GLY GLY ARG VAL ARG PHE SER VAL ALA ASP THR SEQRES 13 A 484 GLY PRO GLY VAL ALA PRO ASP ALA ARG ALA ARG ILE PHE SEQRES 14 A 484 GLU ALA PHE VAL GLN THR ASP VAL THR HIS ALA THR GLN SEQRES 15 A 484 LEU GLY GLY ALA GLY LEU GLY LEU ALA ILE VAL SER ARG SEQRES 16 A 484 LEU SER ALA ALA MET GLY GLY ALA VAL GLY VAL GLY GLY SEQRES 17 A 484 GLU LEU GLY GLN GLY ALA GLU PHE TRP PHE GLU ALA PRO SEQRES 18 A 484 PHE ALA THR ALA ALA ALA PRO LEU ARG ALA ALA PRO LEU SEQRES 19 A 484 GLU GLY ARG ASN VAL ALA ILE ALA SER PRO ASN ALA ILE SEQRES 20 A 484 VAL ARG ALA ALA THR ALA ARG GLN ILE GLU ALA ALA GLY SEQRES 21 A 484 GLY ARG ALA TYR ALA ALA VAL ASP ILE ALA SER ALA LEU SEQRES 22 A 484 ALA GLY ALA PRO ALA ASP ALA VAL LEU LEU ILE ASP ALA SEQRES 23 A 484 ALA LEU SER GLY PRO ARG GLY ALA LEU LYS PRO PRO ALA SEQRES 24 A 484 GLY ARG ARG SER VAL VAL LEU LEU THR PRO GLU GLN ARG SEQRES 25 A 484 ASP ARG ILE ASP ARG LEU LYS ALA ALA GLY PHE SER GLY SEQRES 26 A 484 TYR LEU ILE LYS PRO LEU ARG ALA ALA SER LEU VAL ALA SEQRES 27 A 484 GLN VAL LEU GLN ALA VAL THR ALA ASP GLY VAL ALA GLU SEQRES 28 A 484 ASP GLU PRO ALA HIS ASP ASP ARG ILE ALA GLY ALA VAL SEQRES 29 A 484 ALA SER GLY ALA ARG VAL LEU LEU ALA GLU ASP ASN PRO SEQRES 30 A 484 ILE ASN ALA LEU LEU ALA ARG THR LEU LEU GLU ARG GLU SEQRES 31 A 484 GLY CYS ILE VAL ASP ARG VAL ALA ASP GLY GLU GLN ALA SEQRES 32 A 484 ILE ALA ALA ALA SER ALA GLY VAL TYR ASP LEU ILE LEU SEQRES 33 A 484 MET ASP LEU ARG MET PRO GLY LEU THR GLY ILE GLU ALA SEQRES 34 A 484 ALA ARG ALA LEU ARG ALA LYS GLY VAL ALA THR PRO ILE SEQRES 35 A 484 ALA ALA LEU THR ALA ASP ALA PHE ASP GLU ASP ARG ARG SEQRES 36 A 484 THR CYS LEU ALA ALA GLY MET ASP ASP PHE LEU VAL LYS SEQRES 37 A 484 PRO LEU THR GLN GLU ALA LEU ARG ASP ALA LEU LYS ARG SEQRES 38 A 484 TRP THR THR HET ANP A 601 31 HET MG A 602 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *11(H2 O) HELIX 1 AA1 THR A 14 ASN A 41 1 28 HELIX 2 AA2 ARG A 49 GLY A 76 1 28 HELIX 3 AA3 ASP A 88 LYS A 107 1 20 HELIX 4 AA4 ASP A 125 THR A 144 1 20 HELIX 5 AA5 ASP A 175 ILE A 180 1 6 HELIX 6 AA6 LEU A 200 MET A 212 1 13 HELIX 7 AA7 ASN A 257 ALA A 271 1 15 HELIX 8 AA8 ASP A 280 GLY A 287 1 8 HELIX 9 AA9 ALA A 299 SER A 301 5 3 HELIX 10 AB1 GLY A 302 ALA A 306 5 5 HELIX 11 AB2 THR A 320 ASP A 325 5 6 HELIX 12 AB3 ARG A 326 ALA A 333 1 8 HELIX 13 AB4 ARG A 344 LEU A 353 1 10 HELIX 14 AB5 ASP A 369 ALA A 373 5 5 HELIX 15 AB6 ASN A 388 GLU A 400 1 13 HELIX 16 AB7 ARG A 401 GLY A 403 5 3 HELIX 17 AB8 ASP A 411 ALA A 421 1 11 HELIX 18 AB9 THR A 437 LYS A 448 1 12 HELIX 19 AC1 ARG A 466 MET A 474 1 9 HELIX 20 AC2 THR A 483 THR A 495 1 13 SHEET 1 AA1 3 ALA A 85 VAL A 87 0 SHEET 2 AA1 3 ILE A 122 ALA A 124 -1 O ILE A 122 N VAL A 87 SHEET 3 AA1 3 ALA A 235 THR A 236 -1 O ALA A 235 N LEU A 123 SHEET 1 AA2 5 GLU A 110 ALA A 114 0 SHEET 2 AA2 5 GLY A 148 ILE A 156 1 O VAL A 149 N GLU A 110 SHEET 3 AA2 5 ARG A 160 ASP A 167 -1 O ARG A 160 N ILE A 156 SHEET 4 AA2 5 ALA A 226 PRO A 233 -1 O PHE A 228 N VAL A 165 SHEET 5 AA2 5 ALA A 215 VAL A 218 -1 N GLY A 217 O TRP A 229 SHEET 1 AA3 5 ARG A 274 ALA A 278 0 SHEET 2 AA3 5 ASN A 250 ALA A 254 1 N ILE A 253 O ALA A 278 SHEET 3 AA3 5 VAL A 293 ASP A 297 1 O LEU A 295 N ALA A 252 SHEET 4 AA3 5 SER A 315 LEU A 319 1 O VAL A 316 N LEU A 294 SHEET 5 AA3 5 GLY A 337 ILE A 340 1 O LEU A 339 N LEU A 319 SHEET 1 AA4 5 ILE A 405 VAL A 409 0 SHEET 2 AA4 5 ARG A 381 ALA A 385 1 N LEU A 384 O ASP A 407 SHEET 3 AA4 5 LEU A 426 ASP A 430 1 O LEU A 428 N ALA A 385 SHEET 4 AA4 5 ALA A 455 LEU A 457 1 O ALA A 455 N ILE A 427 SHEET 5 AA4 5 ASP A 476 LEU A 478 1 O LEU A 478 N ALA A 456 LINK OD1 ASN A 139 MG MG A 602 1555 1555 2.21 LINK O3G ANP A 601 MG MG A 602 1555 1555 2.38 LINK O1B ANP A 601 MG MG A 602 1555 1555 1.98 LINK O2A ANP A 601 MG MG A 602 1555 1555 2.98 LINK MG MG A 602 O HOH A 701 1555 1555 1.74 CISPEP 1 LYS A 341 PRO A 342 0 0.65 CISPEP 2 LYS A 480 PRO A 481 0 7.07 SITE 1 AC1 19 ASN A 139 LYS A 142 PHE A 143 ASP A 167 SITE 2 AC1 19 ILE A 180 VAL A 185 GLN A 186 THR A 187 SITE 3 AC1 19 GLY A 199 LEU A 200 GLY A 201 LEU A 202 SITE 4 AC1 19 PHE A 228 MG A 602 HOH A 701 HOH A 702 SITE 5 AC1 19 HOH A 705 HOH A 706 HOH A 707 SITE 1 AC2 4 ASN A 139 LYS A 142 ANP A 601 HOH A 701 CRYST1 64.504 64.504 260.209 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015503 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015503 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003843 0.00000