HEADER SIGNALING PROTEIN 19-FEB-19 6QRQ TITLE APO CONFORMATION OF CHEMOTAXIS SENSOR ODP COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXYGEN-BINDING DIIRON PROTEIN; COMPND 3 CHAIN: B, A, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TMARI_0010; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CHEMOTAXIS SENSOR, DIIRON-PEROXO ADDUCT, PHOSPHATASE, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.R.MUOK,B.R.CRANE REVDAT 4 30-MAR-22 6QRQ 1 REMARK REVDAT 3 31-JUL-19 6QRQ 1 JRNL REVDAT 2 17-JUL-19 6QRQ 1 JRNL REVDAT 1 19-JUN-19 6QRQ 0 JRNL AUTH A.R.MUOK,Y.DENG,V.M.GUMEROV,J.E.CHONG,J.R.DEROSA, JRNL AUTH 2 K.KURNIYATI,R.E.COLEMAN,K.M.LANCASTER,C.LI,I.B.ZHULIN, JRNL AUTH 3 B.R.CRANE JRNL TITL A DI-IRON PROTEIN RECRUITED AS AN FE[II] AND OXYGEN SENSOR JRNL TITL 2 FOR BACTERIAL CHEMOTAXIS FUNCTIONS BY STABILIZING AN JRNL TITL 3 IRON-PEROXY SPECIES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 14955 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31270241 JRNL DOI 10.1073/PNAS.1904234116 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 32132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33480 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.562 REMARK 200 RESOLUTION RANGE LOW (A) : 49.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.16200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 7% ISOPROPANOL, REMARK 280 23% POLYETHYLENEGLYCOL 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.32500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.48200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.36250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.48200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.32500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.36250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 42.32500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 55.48200 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 42.32500 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 55.36250 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 -42.32500 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 55.36250 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 LEU B 253 REMARK 465 GLU A 21 REMARK 465 GLU A 22 REMARK 465 LYS A 23 REMARK 465 GLU A 24 REMARK 465 GLU A 25 REMARK 465 GLU A 26 REMARK 465 ILE A 27 REMARK 465 VAL A 28 REMARK 465 LEU A 253 REMARK 465 MET C 1 REMARK 465 PHE C 2 REMARK 465 GLU C 24 REMARK 465 GLU C 25 REMARK 465 GLU C 26 REMARK 465 LEU C 253 REMARK 465 MET D 1 REMARK 465 PHE D 2 REMARK 465 LEU D 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE B 2 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 3 CB CG CD OE1 OE2 REMARK 470 GLU B 22 CB CG CD OE1 OE2 REMARK 470 LYS B 23 CB CG CD CE NZ REMARK 470 GLU B 24 CB CG CD OE1 OE2 REMARK 470 GLU B 25 CB CG CD OE1 OE2 REMARK 470 MET A 1 CB CG SD CE REMARK 470 PHE A 2 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 3 CB CG CD OE1 OE2 REMARK 470 TRP A 20 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 470 TRP A 20 CZ2 CZ3 CH2 REMARK 470 GLU C 21 CB CG CD OE1 OE2 REMARK 470 GLU C 22 CB CG CD OE1 OE2 REMARK 470 LYS C 23 CB CG CD CE NZ REMARK 470 GLU D 21 CB CG CD OE1 OE2 REMARK 470 GLU D 22 CB CG CD OE1 OE2 REMARK 470 LYS D 23 CB CG CD CE NZ REMARK 470 GLU D 24 CB CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 480 ASP A 77 CG OD1 OD2 REMARK 480 ASP A 79 CB CG OD1 OD2 REMARK 480 ARG C 54 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR D 251 O HOH D 301 1.89 REMARK 500 OD1 ASP C 37 OG SER C 131 1.96 REMARK 500 OE2 GLU A 5 OH TYR A 177 2.11 REMARK 500 NZ LYS C 128 O GLY C 132 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND1 HIS B 108 OD2 ASP D 79 3644 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B 76 CA GLN B 76 CB -0.154 REMARK 500 GLU A 61 CD GLU A 61 OE2 0.083 REMARK 500 GLU C 134 CG GLU C 134 CD 0.092 REMARK 500 LYS C 171 CE LYS C 171 NZ 0.179 REMARK 500 SER C 229 CB SER C 229 OG 0.095 REMARK 500 LYS C 231 CE LYS C 231 NZ 0.172 REMARK 500 GLU C 235 CD GLU C 235 OE2 0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 14 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 ASP B 79 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 LYS B 231 CD - CE - NZ ANGL. DEV. = -16.7 DEGREES REMARK 500 ARG A 174 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LYS A 213 CG - CD - CE ANGL. DEV. = -31.8 DEGREES REMARK 500 TYR A 251 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG C 69 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 GLU C 92 CA - CB - CG ANGL. DEV. = -17.6 DEGREES REMARK 500 ARG C 104 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG C 104 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 LYS C 128 CG - CD - CE ANGL. DEV. = -26.9 DEGREES REMARK 500 SER C 131 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 GLU C 134 OE1 - CD - OE2 ANGL. DEV. = -8.0 DEGREES REMARK 500 SER C 229 CB - CA - C ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 24 -92.02 -39.06 REMARK 500 GLU B 25 -75.93 130.18 REMARK 500 GLU B 26 4.71 -158.63 REMARK 500 GLN B 76 60.56 -109.57 REMARK 500 ALA B 140 38.36 -150.13 REMARK 500 LYS B 171 -82.72 -22.17 REMARK 500 PHE A 2 54.54 -156.49 REMARK 500 ASP A 77 -169.44 79.17 REMARK 500 ALA A 140 37.79 -150.74 REMARK 500 LYS A 171 -120.59 24.30 REMARK 500 LYS A 173 54.82 -108.84 REMARK 500 TYR A 251 164.71 -41.78 REMARK 500 LEU C 18 -145.51 -76.15 REMARK 500 TRP C 20 -145.44 -105.15 REMARK 500 GLU C 21 -57.16 -134.72 REMARK 500 GLU C 22 76.92 117.89 REMARK 500 HIS C 75 -175.22 -171.06 REMARK 500 ALA C 140 37.56 -154.13 REMARK 500 LYS C 173 56.41 -117.11 REMARK 500 TYR C 251 -51.46 68.44 REMARK 500 GLU D 21 -72.95 -96.07 REMARK 500 GLU D 22 94.57 80.66 REMARK 500 ILE D 27 -131.41 58.92 REMARK 500 HIS D 75 -179.44 -172.46 REMARK 500 ASP D 77 -81.77 -123.63 REMARK 500 ALA D 140 34.33 -149.81 REMARK 500 LYS D 171 104.27 -58.13 REMARK 500 MET D 216 133.68 -177.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 77 PRO A 78 -91.60 REMARK 500 ILE D 27 VAL D 28 140.24 REMARK 500 VAL D 28 GLN D 29 -136.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 6QRQ B 1 253 UNP R4NP31 R4NP31_THEMA 1 253 DBREF 6QRQ A 1 253 UNP R4NP31 R4NP31_THEMA 1 253 DBREF 6QRQ C 1 253 UNP R4NP31 R4NP31_THEMA 1 253 DBREF 6QRQ D 1 253 UNP R4NP31 R4NP31_THEMA 1 253 SEQRES 1 B 253 MET PHE GLU ASN GLU ILE LEU PHE ASP ASN GLY GLN HIS SEQRES 2 B 253 LYS PHE MET PHE LEU GLY TRP GLU GLU LYS GLU GLU GLU SEQRES 3 B 253 ILE VAL GLN THR ASN GLN TYR LEU ILE LEU ASP GLY ASN SEQRES 4 B 253 GLU GLY ILE LEU LEU ASP PRO GLY GLY ALA HIS VAL PHE SEQRES 5 B 253 PRO ARG VAL MET SER ASN VAL ALA GLU VAL VAL ASP LEU SEQRES 6 B 253 SER SER ILE ARG HIS ILE PHE TYR THR HIS GLN ASP PRO SEQRES 7 B 253 ASP VAL THR SER GLY ILE LEU LEU TRP LEU SER ILE CYS SEQRES 8 B 253 GLU ASN ALA LYS ILE TYR ILE SER SER LEU TRP VAL ARG SEQRES 9 B 253 PHE LEU PRO HIS PHE GLY ILE TYR ASP GLN LYS ARG ILE SEQRES 10 B 253 VAL PRO ILE SER ASP LYS GLY THR LYS ILE LYS LEU LEU SEQRES 11 B 253 SER GLY ASN GLU LEU GLU ILE LEU PRO ALA HIS PHE LEU SEQRES 12 B 253 HIS SER THR GLY ASN PHE VAL LEU TYR ASP PRO VAL ALA SEQRES 13 B 253 LYS ILE LEU PHE SER GLY ASP ILE GLY ALA ALA VAL PHE SEQRES 14 B 253 GLU LYS GLY LYS ARG TYR ARG TYR VAL ASP ASP PHE GLU SEQRES 15 B 253 ARG HIS LEU PRO LEU MET GLU ALA PHE HIS LYS ARG TYR SEQRES 16 B 253 MET SER SER ASN ALA ALA CYS LYS LYS TRP VAL ASP MET SEQRES 17 B 253 VAL SER LYS LYS LYS ILE ASP MET ILE ALA PRO GLN HIS SEQRES 18 B 253 GLY ALA VAL PHE ARG GLY GLU SER VAL LYS LYS PHE LEU SEQRES 19 B 253 GLU TRP PHE ARG ASN LEU LYS CYS GLY VAL ASP LEU ILE SEQRES 20 B 253 ASP ASN LEU TYR SER LEU SEQRES 1 A 253 MET PHE GLU ASN GLU ILE LEU PHE ASP ASN GLY GLN HIS SEQRES 2 A 253 LYS PHE MET PHE LEU GLY TRP GLU GLU LYS GLU GLU GLU SEQRES 3 A 253 ILE VAL GLN THR ASN GLN TYR LEU ILE LEU ASP GLY ASN SEQRES 4 A 253 GLU GLY ILE LEU LEU ASP PRO GLY GLY ALA HIS VAL PHE SEQRES 5 A 253 PRO ARG VAL MET SER ASN VAL ALA GLU VAL VAL ASP LEU SEQRES 6 A 253 SER SER ILE ARG HIS ILE PHE TYR THR HIS GLN ASP PRO SEQRES 7 A 253 ASP VAL THR SER GLY ILE LEU LEU TRP LEU SER ILE CYS SEQRES 8 A 253 GLU ASN ALA LYS ILE TYR ILE SER SER LEU TRP VAL ARG SEQRES 9 A 253 PHE LEU PRO HIS PHE GLY ILE TYR ASP GLN LYS ARG ILE SEQRES 10 A 253 VAL PRO ILE SER ASP LYS GLY THR LYS ILE LYS LEU LEU SEQRES 11 A 253 SER GLY ASN GLU LEU GLU ILE LEU PRO ALA HIS PHE LEU SEQRES 12 A 253 HIS SER THR GLY ASN PHE VAL LEU TYR ASP PRO VAL ALA SEQRES 13 A 253 LYS ILE LEU PHE SER GLY ASP ILE GLY ALA ALA VAL PHE SEQRES 14 A 253 GLU LYS GLY LYS ARG TYR ARG TYR VAL ASP ASP PHE GLU SEQRES 15 A 253 ARG HIS LEU PRO LEU MET GLU ALA PHE HIS LYS ARG TYR SEQRES 16 A 253 MET SER SER ASN ALA ALA CYS LYS LYS TRP VAL ASP MET SEQRES 17 A 253 VAL SER LYS LYS LYS ILE ASP MET ILE ALA PRO GLN HIS SEQRES 18 A 253 GLY ALA VAL PHE ARG GLY GLU SER VAL LYS LYS PHE LEU SEQRES 19 A 253 GLU TRP PHE ARG ASN LEU LYS CYS GLY VAL ASP LEU ILE SEQRES 20 A 253 ASP ASN LEU TYR SER LEU SEQRES 1 C 253 MET PHE GLU ASN GLU ILE LEU PHE ASP ASN GLY GLN HIS SEQRES 2 C 253 LYS PHE MET PHE LEU GLY TRP GLU GLU LYS GLU GLU GLU SEQRES 3 C 253 ILE VAL GLN THR ASN GLN TYR LEU ILE LEU ASP GLY ASN SEQRES 4 C 253 GLU GLY ILE LEU LEU ASP PRO GLY GLY ALA HIS VAL PHE SEQRES 5 C 253 PRO ARG VAL MET SER ASN VAL ALA GLU VAL VAL ASP LEU SEQRES 6 C 253 SER SER ILE ARG HIS ILE PHE TYR THR HIS GLN ASP PRO SEQRES 7 C 253 ASP VAL THR SER GLY ILE LEU LEU TRP LEU SER ILE CYS SEQRES 8 C 253 GLU ASN ALA LYS ILE TYR ILE SER SER LEU TRP VAL ARG SEQRES 9 C 253 PHE LEU PRO HIS PHE GLY ILE TYR ASP GLN LYS ARG ILE SEQRES 10 C 253 VAL PRO ILE SER ASP LYS GLY THR LYS ILE LYS LEU LEU SEQRES 11 C 253 SER GLY ASN GLU LEU GLU ILE LEU PRO ALA HIS PHE LEU SEQRES 12 C 253 HIS SER THR GLY ASN PHE VAL LEU TYR ASP PRO VAL ALA SEQRES 13 C 253 LYS ILE LEU PHE SER GLY ASP ILE GLY ALA ALA VAL PHE SEQRES 14 C 253 GLU LYS GLY LYS ARG TYR ARG TYR VAL ASP ASP PHE GLU SEQRES 15 C 253 ARG HIS LEU PRO LEU MET GLU ALA PHE HIS LYS ARG TYR SEQRES 16 C 253 MET SER SER ASN ALA ALA CYS LYS LYS TRP VAL ASP MET SEQRES 17 C 253 VAL SER LYS LYS LYS ILE ASP MET ILE ALA PRO GLN HIS SEQRES 18 C 253 GLY ALA VAL PHE ARG GLY GLU SER VAL LYS LYS PHE LEU SEQRES 19 C 253 GLU TRP PHE ARG ASN LEU LYS CYS GLY VAL ASP LEU ILE SEQRES 20 C 253 ASP ASN LEU TYR SER LEU SEQRES 1 D 253 MET PHE GLU ASN GLU ILE LEU PHE ASP ASN GLY GLN HIS SEQRES 2 D 253 LYS PHE MET PHE LEU GLY TRP GLU GLU LYS GLU GLU GLU SEQRES 3 D 253 ILE VAL GLN THR ASN GLN TYR LEU ILE LEU ASP GLY ASN SEQRES 4 D 253 GLU GLY ILE LEU LEU ASP PRO GLY GLY ALA HIS VAL PHE SEQRES 5 D 253 PRO ARG VAL MET SER ASN VAL ALA GLU VAL VAL ASP LEU SEQRES 6 D 253 SER SER ILE ARG HIS ILE PHE TYR THR HIS GLN ASP PRO SEQRES 7 D 253 ASP VAL THR SER GLY ILE LEU LEU TRP LEU SER ILE CYS SEQRES 8 D 253 GLU ASN ALA LYS ILE TYR ILE SER SER LEU TRP VAL ARG SEQRES 9 D 253 PHE LEU PRO HIS PHE GLY ILE TYR ASP GLN LYS ARG ILE SEQRES 10 D 253 VAL PRO ILE SER ASP LYS GLY THR LYS ILE LYS LEU LEU SEQRES 11 D 253 SER GLY ASN GLU LEU GLU ILE LEU PRO ALA HIS PHE LEU SEQRES 12 D 253 HIS SER THR GLY ASN PHE VAL LEU TYR ASP PRO VAL ALA SEQRES 13 D 253 LYS ILE LEU PHE SER GLY ASP ILE GLY ALA ALA VAL PHE SEQRES 14 D 253 GLU LYS GLY LYS ARG TYR ARG TYR VAL ASP ASP PHE GLU SEQRES 15 D 253 ARG HIS LEU PRO LEU MET GLU ALA PHE HIS LYS ARG TYR SEQRES 16 D 253 MET SER SER ASN ALA ALA CYS LYS LYS TRP VAL ASP MET SEQRES 17 D 253 VAL SER LYS LYS LYS ILE ASP MET ILE ALA PRO GLN HIS SEQRES 18 D 253 GLY ALA VAL PHE ARG GLY GLU SER VAL LYS LYS PHE LEU SEQRES 19 D 253 GLU TRP PHE ARG ASN LEU LYS CYS GLY VAL ASP LEU ILE SEQRES 20 D 253 ASP ASN LEU TYR SER LEU FORMUL 5 HOH *82(H2 O) HELIX 1 AA1 VAL B 51 GLU B 61 1 11 HELIX 2 AA2 ASP B 77 CYS B 91 1 15 HELIX 3 AA3 LEU B 101 GLY B 110 5 10 HELIX 4 AA4 ASP B 180 LEU B 185 1 6 HELIX 5 AA5 MET B 188 MET B 196 1 9 HELIX 6 AA6 SER B 198 SER B 210 1 13 HELIX 7 AA7 GLU B 228 ASN B 239 1 12 HELIX 8 AA8 CYS B 242 ASP B 245 5 4 HELIX 9 AA9 LEU B 246 SER B 252 1 7 HELIX 10 AB1 VAL A 51 VAL A 63 1 13 HELIX 11 AB2 ASP A 64 SER A 66 5 3 HELIX 12 AB3 GLY A 83 CYS A 91 1 9 HELIX 13 AB4 TRP A 102 GLY A 110 5 9 HELIX 14 AB5 ASP A 180 LEU A 185 1 6 HELIX 15 AB6 LEU A 185 MET A 196 1 12 HELIX 16 AB7 SER A 198 SER A 210 1 13 HELIX 17 AB8 GLU A 228 ASN A 239 1 12 HELIX 18 AB9 CYS A 242 ASP A 245 5 4 HELIX 19 AC1 LEU A 246 TYR A 251 1 6 HELIX 20 AC2 VAL C 51 GLU C 61 1 11 HELIX 21 AC3 ASP C 77 SER C 82 1 6 HELIX 22 AC4 GLY C 83 CYS C 91 1 9 HELIX 23 AC5 TRP C 102 GLY C 110 5 9 HELIX 24 AC6 ASP C 180 LEU C 185 1 6 HELIX 25 AC7 MET C 188 MET C 196 1 9 HELIX 26 AC8 SER C 198 SER C 210 1 13 HELIX 27 AC9 GLU C 228 ASN C 239 1 12 HELIX 28 AD1 CYS C 242 ILE C 247 5 6 HELIX 29 AD2 VAL D 51 GLU D 61 1 11 HELIX 30 AD3 ASP D 64 SER D 66 5 3 HELIX 31 AD4 ASP D 79 CYS D 91 1 13 HELIX 32 AD5 TRP D 102 GLY D 110 5 9 HELIX 33 AD6 ASP D 113 LYS D 115 5 3 HELIX 34 AD7 ASP D 180 LEU D 185 1 6 HELIX 35 AD8 MET D 188 MET D 196 1 9 HELIX 36 AD9 SER D 198 SER D 210 1 13 HELIX 37 AE1 GLU D 228 ASN D 239 1 12 HELIX 38 AE2 CYS D 242 ASP D 245 5 4 HELIX 39 AE3 LEU D 246 TYR D 251 1 6 SHEET 1 AA1 7 GLU B 5 ASP B 9 0 SHEET 2 AA1 7 HIS B 13 PHE B 17 -1 O PHE B 17 N GLU B 5 SHEET 3 AA1 7 TYR B 33 ASP B 37 -1 O LEU B 34 N MET B 16 SHEET 4 AA1 7 GLU B 40 LEU B 44 -1 O GLU B 40 N ASP B 37 SHEET 5 AA1 7 ILE B 68 PHE B 72 1 O PHE B 72 N LEU B 43 SHEET 6 AA1 7 LYS B 95 SER B 99 1 O TYR B 97 N ILE B 71 SHEET 7 AA1 7 ILE B 117 ILE B 120 1 O VAL B 118 N ILE B 96 SHEET 1 AA2 5 THR B 125 LYS B 128 0 SHEET 2 AA2 5 GLU B 134 PRO B 139 -1 O LEU B 135 N ILE B 127 SHEET 3 AA2 5 PHE B 149 ASP B 153 -1 O TYR B 152 N GLU B 136 SHEET 4 AA2 5 ILE B 158 GLY B 162 -1 O PHE B 160 N LEU B 151 SHEET 5 AA2 5 MET B 216 PRO B 219 1 O ALA B 218 N LEU B 159 SHEET 1 AA3 2 TYR B 177 VAL B 178 0 SHEET 2 AA3 2 VAL B 224 PHE B 225 1 O VAL B 224 N VAL B 178 SHEET 1 AA4 7 GLU A 5 ASP A 9 0 SHEET 2 AA4 7 HIS A 13 LEU A 18 -1 O PHE A 15 N LEU A 7 SHEET 3 AA4 7 GLN A 32 ASP A 37 -1 O LEU A 34 N MET A 16 SHEET 4 AA4 7 GLU A 40 LEU A 44 -1 O GLU A 40 N ASP A 37 SHEET 5 AA4 7 ILE A 68 PHE A 72 1 O PHE A 72 N LEU A 43 SHEET 6 AA4 7 LYS A 95 SER A 99 1 O TYR A 97 N ILE A 71 SHEET 7 AA4 7 ILE A 117 ILE A 120 1 O VAL A 118 N ILE A 96 SHEET 1 AA5 7 THR A 125 LYS A 128 0 SHEET 2 AA5 7 GLU A 134 PRO A 139 -1 O ILE A 137 N THR A 125 SHEET 3 AA5 7 PHE A 149 ASP A 153 -1 O TYR A 152 N GLU A 136 SHEET 4 AA5 7 ILE A 158 GLY A 162 -1 O PHE A 160 N LEU A 151 SHEET 5 AA5 7 MET A 216 PRO A 219 1 O ALA A 218 N LEU A 159 SHEET 6 AA5 7 VAL A 224 ARG A 226 -1 O PHE A 225 N ILE A 217 SHEET 7 AA5 7 TYR A 177 VAL A 178 1 N VAL A 178 O VAL A 224 SHEET 1 AA6 7 GLU C 5 ASP C 9 0 SHEET 2 AA6 7 HIS C 13 PHE C 17 -1 O PHE C 15 N LEU C 7 SHEET 3 AA6 7 TYR C 33 ASP C 37 -1 O LEU C 34 N MET C 16 SHEET 4 AA6 7 GLU C 40 LEU C 44 -1 O GLU C 40 N ASP C 37 SHEET 5 AA6 7 ILE C 68 PHE C 72 1 O PHE C 72 N LEU C 43 SHEET 6 AA6 7 LYS C 95 SER C 99 1 O TYR C 97 N ILE C 71 SHEET 7 AA6 7 ILE C 117 ILE C 120 1 O VAL C 118 N ILE C 96 SHEET 1 AA7 7 THR C 125 LYS C 128 0 SHEET 2 AA7 7 GLU C 134 PRO C 139 -1 O LEU C 135 N ILE C 127 SHEET 3 AA7 7 PHE C 149 ASP C 153 -1 O TYR C 152 N GLU C 136 SHEET 4 AA7 7 ILE C 158 GLY C 162 -1 O PHE C 160 N LEU C 151 SHEET 5 AA7 7 MET C 216 PRO C 219 1 O ALA C 218 N LEU C 159 SHEET 6 AA7 7 VAL C 224 ARG C 226 -1 O PHE C 225 N ILE C 217 SHEET 7 AA7 7 TYR C 177 VAL C 178 1 N VAL C 178 O VAL C 224 SHEET 1 AA8 7 GLU D 5 ASP D 9 0 SHEET 2 AA8 7 HIS D 13 PHE D 17 -1 O PHE D 15 N LEU D 7 SHEET 3 AA8 7 TYR D 33 ASP D 37 -1 O LEU D 36 N LYS D 14 SHEET 4 AA8 7 GLU D 40 LEU D 44 -1 O GLU D 40 N ASP D 37 SHEET 5 AA8 7 ILE D 68 PHE D 72 1 O PHE D 72 N LEU D 43 SHEET 6 AA8 7 LYS D 95 SER D 99 1 O TYR D 97 N ILE D 71 SHEET 7 AA8 7 ILE D 117 ILE D 120 1 O VAL D 118 N ILE D 96 SHEET 1 AA9 7 THR D 125 LYS D 128 0 SHEET 2 AA9 7 GLU D 134 PRO D 139 -1 O ILE D 137 N THR D 125 SHEET 3 AA9 7 PHE D 149 ASP D 153 -1 O TYR D 152 N GLU D 136 SHEET 4 AA9 7 ILE D 158 GLY D 162 -1 O PHE D 160 N LEU D 151 SHEET 5 AA9 7 MET D 216 PRO D 219 1 O ALA D 218 N LEU D 159 SHEET 6 AA9 7 VAL D 224 ARG D 226 -1 O PHE D 225 N ILE D 217 SHEET 7 AA9 7 TYR D 177 VAL D 178 1 N VAL D 178 O VAL D 224 CISPEP 1 GLU B 22 LYS B 23 0 -9.71 CISPEP 2 GLU B 25 GLU B 26 0 12.30 CISPEP 3 ILE B 27 VAL B 28 0 -22.80 CISPEP 4 LEU B 143 HIS B 144 0 10.43 CISPEP 5 LEU A 143 HIS A 144 0 10.13 CISPEP 6 GLY C 19 TRP C 20 0 -11.37 CISPEP 7 LEU C 143 HIS C 144 0 10.28 CISPEP 8 TRP D 20 GLU D 21 0 -20.44 CISPEP 9 GLU D 21 GLU D 22 0 -3.50 CISPEP 10 ASP D 77 PRO D 78 0 -19.37 CISPEP 11 PRO D 78 ASP D 79 0 21.99 CISPEP 12 LEU D 143 HIS D 144 0 9.96 CRYST1 84.650 110.725 110.964 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011813 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009012 0.00000