data_6QRZ # _entry.id 6QRZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.314 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6QRZ WWPDB D_1292100290 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6QRZ _pdbx_database_status.recvd_initial_deposition_date 2019-02-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Xu, H.' 1 0000-0002-8271-3906 'Lebrette, H.' 2 0000-0002-8081-181X 'Clabbers, M.T.B.' 3 0000-0002-5466-6508 'Zhao, J.' 4 0000-0001-8444-6883 'Griese, J.J.' 5 0000-0003-3686-3062 'Zou, X.' 6 0000-0001-6748-6656 'Hogbom, M.' 7 0000-0001-5574-9383 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary 'Sci Adv' ? ? 2375-2548 ? ? 5 ? eaax4621 eaax4621 'Solving a new R2lox protein structure by microcrystal electron diffraction.' 2019 ? 10.1126/sciadv.aax4621 31457106 ? ? ? ? ? ? ? ? US ? ? 1 Biorxiv ? ? ? ? ? ? ? ? ? 'Solving the first novel protein structure by 3D micro-crystal electron diffraction' 2019 ? 10.1101/600387 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, H.' 1 0000-0002-8271-3906 primary 'Lebrette, H.' 2 0000-0002-8081-181X primary 'Clabbers, M.T.B.' 3 0000-0002-5466-6508 primary 'Zhao, J.' 4 0000-0001-8444-6883 primary 'Griese, J.J.' 5 0000-0003-3686-3062 primary 'Zou, X.' 6 0000-0001-6748-6656 primary 'Hogbom, M.' 7 0000-0001-5574-9383 1 'Xu, H.' 8 0000-0002-8271-3906 1 'Lebrette, H.' 9 0000-0002-8081-181X 1 'Clabbers, M.T.B.' 10 0000-0002-5466-6508 1 'Zhao, J.' 11 0000-0001-8444-6883 1 'Griese, J.J.' 12 0000-0003-3686-3062 1 'Zou, X.' 13 0000-0001-6748-6656 1 'Hogbom, M.' 14 0000-0001-5574-9383 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6QRZ _cell.details ? _cell.formula_units_Z ? _cell.length_a 63.310 _cell.length_a_esd ? _cell.length_b 108.930 _cell.length_b_esd ? _cell.length_c 48.170 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribonucleoside-diphosphate reductase' 38058.613 1 1.17.4.1 ? ? ? 2 non-polymer syn 'MANGANESE (III) ION' 54.938 1 ? ? ? ? 3 non-polymer syn 'FE (III) ION' 55.845 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAHHHHHHVDDDDKMKEKLLEFRSEGVIHKKFKATSVGYDWNTFPMKLYQIGKRLFWDPAKIDFSKDKEDWKKLSKDEKN YLLNIVSLFMAGEEAVAVDITPLISTMINEGRVEDVIYLEQFAFEEAKHAEAFRRFCDSLEINDDLTIFTTEYNPWYQKI FYEELPSVMWKLRVDPSPENLAVAVTTYNLYVEGVAAESGYKTFKHIFNSLNIMPGLSKTVNLIATDESRHIAYGTYLIT RLIVENGESIYRKAIEQFNKLVGIVQSLTRPLAKLPFGLTPDFTIENRKQLVNARLTVIERALKMTPEQVKSFSPKDLGV IEEIKLDK ; _entity_poly.pdbx_seq_one_letter_code_can ;MAHHHHHHVDDDDKMKEKLLEFRSEGVIHKKFKATSVGYDWNTFPMKLYQIGKRLFWDPAKIDFSKDKEDWKKLSKDEKN YLLNIVSLFMAGEEAVAVDITPLISTMINEGRVEDVIYLEQFAFEEAKHAEAFRRFCDSLEINDDLTIFTTEYNPWYQKI FYEELPSVMWKLRVDPSPENLAVAVTTYNLYVEGVAAESGYKTFKHIFNSLNIMPGLSKTVNLIATDESRHIAYGTYLIT RLIVENGESIYRKAIEQFNKLVGIVQSLTRPLAKLPFGLTPDFTIENRKQLVNARLTVIERALKMTPEQVKSFSPKDLGV IEEIKLDK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 VAL n 1 10 ASP n 1 11 ASP n 1 12 ASP n 1 13 ASP n 1 14 LYS n 1 15 MET n 1 16 LYS n 1 17 GLU n 1 18 LYS n 1 19 LEU n 1 20 LEU n 1 21 GLU n 1 22 PHE n 1 23 ARG n 1 24 SER n 1 25 GLU n 1 26 GLY n 1 27 VAL n 1 28 ILE n 1 29 HIS n 1 30 LYS n 1 31 LYS n 1 32 PHE n 1 33 LYS n 1 34 ALA n 1 35 THR n 1 36 SER n 1 37 VAL n 1 38 GLY n 1 39 TYR n 1 40 ASP n 1 41 TRP n 1 42 ASN n 1 43 THR n 1 44 PHE n 1 45 PRO n 1 46 MET n 1 47 LYS n 1 48 LEU n 1 49 TYR n 1 50 GLN n 1 51 ILE n 1 52 GLY n 1 53 LYS n 1 54 ARG n 1 55 LEU n 1 56 PHE n 1 57 TRP n 1 58 ASP n 1 59 PRO n 1 60 ALA n 1 61 LYS n 1 62 ILE n 1 63 ASP n 1 64 PHE n 1 65 SER n 1 66 LYS n 1 67 ASP n 1 68 LYS n 1 69 GLU n 1 70 ASP n 1 71 TRP n 1 72 LYS n 1 73 LYS n 1 74 LEU n 1 75 SER n 1 76 LYS n 1 77 ASP n 1 78 GLU n 1 79 LYS n 1 80 ASN n 1 81 TYR n 1 82 LEU n 1 83 LEU n 1 84 ASN n 1 85 ILE n 1 86 VAL n 1 87 SER n 1 88 LEU n 1 89 PHE n 1 90 MET n 1 91 ALA n 1 92 GLY n 1 93 GLU n 1 94 GLU n 1 95 ALA n 1 96 VAL n 1 97 ALA n 1 98 VAL n 1 99 ASP n 1 100 ILE n 1 101 THR n 1 102 PRO n 1 103 LEU n 1 104 ILE n 1 105 SER n 1 106 THR n 1 107 MET n 1 108 ILE n 1 109 ASN n 1 110 GLU n 1 111 GLY n 1 112 ARG n 1 113 VAL n 1 114 GLU n 1 115 ASP n 1 116 VAL n 1 117 ILE n 1 118 TYR n 1 119 LEU n 1 120 GLU n 1 121 GLN n 1 122 PHE n 1 123 ALA n 1 124 PHE n 1 125 GLU n 1 126 GLU n 1 127 ALA n 1 128 LYS n 1 129 HIS n 1 130 ALA n 1 131 GLU n 1 132 ALA n 1 133 PHE n 1 134 ARG n 1 135 ARG n 1 136 PHE n 1 137 CYS n 1 138 ASP n 1 139 SER n 1 140 LEU n 1 141 GLU n 1 142 ILE n 1 143 ASN n 1 144 ASP n 1 145 ASP n 1 146 LEU n 1 147 THR n 1 148 ILE n 1 149 PHE n 1 150 THR n 1 151 THR n 1 152 GLU n 1 153 TYR n 1 154 ASN n 1 155 PRO n 1 156 TRP n 1 157 TYR n 1 158 GLN n 1 159 LYS n 1 160 ILE n 1 161 PHE n 1 162 TYR n 1 163 GLU n 1 164 GLU n 1 165 LEU n 1 166 PRO n 1 167 SER n 1 168 VAL n 1 169 MET n 1 170 TRP n 1 171 LYS n 1 172 LEU n 1 173 ARG n 1 174 VAL n 1 175 ASP n 1 176 PRO n 1 177 SER n 1 178 PRO n 1 179 GLU n 1 180 ASN n 1 181 LEU n 1 182 ALA n 1 183 VAL n 1 184 ALA n 1 185 VAL n 1 186 THR n 1 187 THR n 1 188 TYR n 1 189 ASN n 1 190 LEU n 1 191 TYR n 1 192 VAL n 1 193 GLU n 1 194 GLY n 1 195 VAL n 1 196 ALA n 1 197 ALA n 1 198 GLU n 1 199 SER n 1 200 GLY n 1 201 TYR n 1 202 LYS n 1 203 THR n 1 204 PHE n 1 205 LYS n 1 206 HIS n 1 207 ILE n 1 208 PHE n 1 209 ASN n 1 210 SER n 1 211 LEU n 1 212 ASN n 1 213 ILE n 1 214 MET n 1 215 PRO n 1 216 GLY n 1 217 LEU n 1 218 SER n 1 219 LYS n 1 220 THR n 1 221 VAL n 1 222 ASN n 1 223 LEU n 1 224 ILE n 1 225 ALA n 1 226 THR n 1 227 ASP n 1 228 GLU n 1 229 SER n 1 230 ARG n 1 231 HIS n 1 232 ILE n 1 233 ALA n 1 234 TYR n 1 235 GLY n 1 236 THR n 1 237 TYR n 1 238 LEU n 1 239 ILE n 1 240 THR n 1 241 ARG n 1 242 LEU n 1 243 ILE n 1 244 VAL n 1 245 GLU n 1 246 ASN n 1 247 GLY n 1 248 GLU n 1 249 SER n 1 250 ILE n 1 251 TYR n 1 252 ARG n 1 253 LYS n 1 254 ALA n 1 255 ILE n 1 256 GLU n 1 257 GLN n 1 258 PHE n 1 259 ASN n 1 260 LYS n 1 261 LEU n 1 262 VAL n 1 263 GLY n 1 264 ILE n 1 265 VAL n 1 266 GLN n 1 267 SER n 1 268 LEU n 1 269 THR n 1 270 ARG n 1 271 PRO n 1 272 LEU n 1 273 ALA n 1 274 LYS n 1 275 LEU n 1 276 PRO n 1 277 PHE n 1 278 GLY n 1 279 LEU n 1 280 THR n 1 281 PRO n 1 282 ASP n 1 283 PHE n 1 284 THR n 1 285 ILE n 1 286 GLU n 1 287 ASN n 1 288 ARG n 1 289 LYS n 1 290 GLN n 1 291 LEU n 1 292 VAL n 1 293 ASN n 1 294 ALA n 1 295 ARG n 1 296 LEU n 1 297 THR n 1 298 VAL n 1 299 ILE n 1 300 GLU n 1 301 ARG n 1 302 ALA n 1 303 LEU n 1 304 LYS n 1 305 MET n 1 306 THR n 1 307 PRO n 1 308 GLU n 1 309 GLN n 1 310 VAL n 1 311 LYS n 1 312 SER n 1 313 PHE n 1 314 SER n 1 315 PRO n 1 316 LYS n 1 317 ASP n 1 318 LEU n 1 319 GLY n 1 320 VAL n 1 321 ILE n 1 322 GLU n 1 323 GLU n 1 324 ILE n 1 325 LYS n 1 326 LEU n 1 327 ASP n 1 328 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 328 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Saci_2188 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus acidocaldarius DSM 639' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 330779 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q4J6V7_SULAC _struct_ref.pdbx_db_accession Q4J6V7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKEKLLEFRSEGVIHKKFKATSVGYDWNTFPMKLYQIGKRLFWDPAKIDFSKDKEDWKKLSKDEKNYLLNIVSLFMAGEE AVAVDITPLISTMINEGRVEDVIYLEQFAFEEAKHAEAFRRFCDSLEINDDLTIFTTEYNPWYQKIFYEELPSVMWKLRV DPSPENLAVAVTTYNLYVEGVAAESGYKTFKHIFNSLNIMPGLSKTVNLIATDESRHIAYGTYLITRLIVENGESIYRKA IEQFNKLVGIVQSLTRPLAKLPFGLTPDFTIENRKQLVNARLTVIERALKMTPEQVKSFSPKDLGVIEEIKLDK ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6QRZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 15 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 328 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q4J6V7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 314 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 314 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6QRZ MET A 1 ? UNP Q4J6V7 ? ? 'initiating methionine' -13 1 1 6QRZ ALA A 2 ? UNP Q4J6V7 ? ? 'expression tag' -12 2 1 6QRZ HIS A 3 ? UNP Q4J6V7 ? ? 'expression tag' -11 3 1 6QRZ HIS A 4 ? UNP Q4J6V7 ? ? 'expression tag' -10 4 1 6QRZ HIS A 5 ? UNP Q4J6V7 ? ? 'expression tag' -9 5 1 6QRZ HIS A 6 ? UNP Q4J6V7 ? ? 'expression tag' -8 6 1 6QRZ HIS A 7 ? UNP Q4J6V7 ? ? 'expression tag' -7 7 1 6QRZ HIS A 8 ? UNP Q4J6V7 ? ? 'expression tag' -6 8 1 6QRZ VAL A 9 ? UNP Q4J6V7 ? ? 'expression tag' -5 9 1 6QRZ ASP A 10 ? UNP Q4J6V7 ? ? 'expression tag' -4 10 1 6QRZ ASP A 11 ? UNP Q4J6V7 ? ? 'expression tag' -3 11 1 6QRZ ASP A 12 ? UNP Q4J6V7 ? ? 'expression tag' -2 12 1 6QRZ ASP A 13 ? UNP Q4J6V7 ? ? 'expression tag' -1 13 1 6QRZ LYS A 14 ? UNP Q4J6V7 ? ? 'expression tag' 0 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN3 non-polymer . 'MANGANESE (III) ION' ? 'Mn 3' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6QRZ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6QRZ _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.000 _refine.ls_d_res_low 28.995 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4423 _refine.ls_number_reflns_R_free 233 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 62.52 _refine.ls_percent_reflns_R_free 5.27 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.3189 _refine.ls_R_factor_R_free 0.3347 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.3179 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.07 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML 0.40 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.002 ? 2293 ? f_bond_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.411 ? 3104 ? f_angle_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 6.546 ? 1376 ? f_dihedral_angle_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.035 ? 345 ? f_chiral_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.003 ? 391 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 3.0003 3.7787 . . 96 1943 59.00 . . . 0.4131 . 0.3854 . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 3.7787 28.9965 . . 137 2247 66.00 . . . 0.3056 . 0.2888 . . . . . . . . . . # _struct.entry_id 6QRZ _struct.title 'Crystal structure of R2-like ligand-binding oxidase from Sulfolobus acidocaldarius solved by 3D micro-crystal electron diffraction' _struct.pdbx_descriptor 'Ribonucleoside-diphosphate reductase (E.C.1.17.4.1)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6QRZ _struct_keywords.text ;micro-crystal, microED, R2-LIKE LIGAND-BINDING OXIDASE, MN/FE COFACTOR, RIBONUCLEOTIDE REDUCTASE R2 SUBUNIT FOLD, METALLOPROTEIN OXIDOREDUCTASE, FERRITIN-LIKE SUPERFAMILY, OXIDOREDUCTASE ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 43 ? LEU A 55 ? THR A 29 LEU A 41 1 ? 13 HELX_P HELX_P2 AA2 LYS A 66 ? LYS A 72 ? LYS A 52 LYS A 58 1 ? 7 HELX_P HELX_P3 AA3 SER A 75 ? ASP A 99 ? SER A 61 ASP A 85 1 ? 25 HELX_P HELX_P4 AA4 ASP A 99 ? GLU A 110 ? ASP A 85 GLU A 96 1 ? 12 HELX_P HELX_P5 AA5 ARG A 112 ? LEU A 140 ? ARG A 98 LEU A 126 1 ? 29 HELX_P HELX_P6 AA6 LEU A 146 ? THR A 151 ? LEU A 132 THR A 137 1 ? 6 HELX_P HELX_P7 AA7 ASN A 154 ? TYR A 162 ? ASN A 140 TYR A 148 1 ? 9 HELX_P HELX_P8 AA8 GLU A 163 ? TRP A 170 ? GLU A 149 TRP A 156 1 ? 8 HELX_P HELX_P9 AA9 TRP A 170 ? ASP A 175 ? TRP A 156 ASP A 161 1 ? 6 HELX_P HELX_P10 AB1 SER A 177 ? THR A 187 ? SER A 163 THR A 173 1 ? 11 HELX_P HELX_P11 AB2 VAL A 195 ? ASN A 212 ? VAL A 181 ASN A 198 1 ? 18 HELX_P HELX_P12 AB3 MET A 214 ? ASN A 246 ? MET A 200 ASN A 232 1 ? 33 HELX_P HELX_P13 AB4 ASN A 246 ? VAL A 262 ? ASN A 232 VAL A 248 1 ? 17 HELX_P HELX_P14 AB5 THR A 280 ? ALA A 302 ? THR A 266 ALA A 288 1 ? 23 HELX_P HELX_P15 AB6 THR A 306 ? VAL A 310 ? THR A 292 VAL A 296 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A GLU 93 OE1 ? ? ? 1_555 B MN3 . MN ? ? A GLU 79 A MN3 401 1_555 ? ? ? ? ? ? ? 2.646 ? metalc2 metalc ? ? A GLU 126 OE1 ? ? ? 1_555 B MN3 . MN ? ? A GLU 112 A MN3 401 1_555 ? ? ? ? ? ? ? 2.697 ? metalc3 metalc ? ? A GLU 126 OE2 ? ? ? 1_555 C FE . FE ? ? A GLU 112 A FE 402 1_555 ? ? ? ? ? ? ? 2.035 ? metalc4 metalc ? ? A HIS 129 ND1 ? ? ? 1_555 B MN3 . MN ? ? A HIS 115 A MN3 401 1_555 ? ? ? ? ? ? ? 2.757 ? metalc5 metalc ? ? A GLU 228 OE2 ? ? ? 1_555 B MN3 . MN ? ? A GLU 214 A MN3 401 1_555 ? ? ? ? ? ? ? 2.673 ? metalc6 metalc ? ? A GLU 228 OE2 ? ? ? 1_555 C FE . FE ? ? A GLU 214 A FE 402 1_555 ? ? ? ? ? ? ? 2.096 ? metalc7 metalc ? ? A HIS 231 ND1 ? ? ? 1_555 C FE . FE ? ? A HIS 217 A FE 402 1_555 ? ? ? ? ? ? ? 2.231 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN3 401 ? 5 'binding site for residue MN3 A 401' AC2 Software A FE 402 ? 5 'binding site for residue FE A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLU A 93 ? GLU A 79 . ? 1_555 ? 2 AC1 5 GLU A 126 ? GLU A 112 . ? 1_555 ? 3 AC1 5 HIS A 129 ? HIS A 115 . ? 1_555 ? 4 AC1 5 GLU A 228 ? GLU A 214 . ? 1_555 ? 5 AC1 5 FE C . ? FE A 402 . ? 1_555 ? 6 AC2 5 GLU A 126 ? GLU A 112 . ? 1_555 ? 7 AC2 5 GLU A 193 ? GLU A 179 . ? 1_555 ? 8 AC2 5 GLU A 228 ? GLU A 214 . ? 1_555 ? 9 AC2 5 HIS A 231 ? HIS A 217 . ? 1_555 ? 10 AC2 5 MN3 B . ? MN3 A 401 . ? 1_555 ? # _atom_sites.entry_id 6QRZ _atom_sites.fract_transf_matrix[1][1] 0.015795 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009180 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020760 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE MN N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -13 ? ? ? A . n A 1 2 ALA 2 -12 ? ? ? A . n A 1 3 HIS 3 -11 ? ? ? A . n A 1 4 HIS 4 -10 ? ? ? A . n A 1 5 HIS 5 -9 ? ? ? A . n A 1 6 HIS 6 -8 ? ? ? A . n A 1 7 HIS 7 -7 ? ? ? A . n A 1 8 HIS 8 -6 ? ? ? A . n A 1 9 VAL 9 -5 ? ? ? A . n A 1 10 ASP 10 -4 ? ? ? A . n A 1 11 ASP 11 -3 ? ? ? A . n A 1 12 ASP 12 -2 ? ? ? A . n A 1 13 ASP 13 -1 ? ? ? A . n A 1 14 LYS 14 0 ? ? ? A . n A 1 15 MET 15 1 ? ? ? A . n A 1 16 LYS 16 2 ? ? ? A . n A 1 17 GLU 17 3 ? ? ? A . n A 1 18 LYS 18 4 ? ? ? A . n A 1 19 LEU 19 5 ? ? ? A . n A 1 20 LEU 20 6 ? ? ? A . n A 1 21 GLU 21 7 ? ? ? A . n A 1 22 PHE 22 8 ? ? ? A . n A 1 23 ARG 23 9 ? ? ? A . n A 1 24 SER 24 10 ? ? ? A . n A 1 25 GLU 25 11 ? ? ? A . n A 1 26 GLY 26 12 ? ? ? A . n A 1 27 VAL 27 13 ? ? ? A . n A 1 28 ILE 28 14 14 ILE ILE A . n A 1 29 HIS 29 15 15 HIS HIS A . n A 1 30 LYS 30 16 16 LYS LYS A . n A 1 31 LYS 31 17 17 LYS LYS A . n A 1 32 PHE 32 18 18 PHE PHE A . n A 1 33 LYS 33 19 19 LYS LYS A . n A 1 34 ALA 34 20 20 ALA ALA A . n A 1 35 THR 35 21 21 THR THR A . n A 1 36 SER 36 22 22 SER SER A . n A 1 37 VAL 37 23 23 VAL VAL A . n A 1 38 GLY 38 24 24 GLY GLY A . n A 1 39 TYR 39 25 25 TYR TYR A . n A 1 40 ASP 40 26 26 ASP ASP A . n A 1 41 TRP 41 27 27 TRP TRP A . n A 1 42 ASN 42 28 28 ASN ASN A . n A 1 43 THR 43 29 29 THR THR A . n A 1 44 PHE 44 30 30 PHE PHE A . n A 1 45 PRO 45 31 31 PRO PRO A . n A 1 46 MET 46 32 32 MET MET A . n A 1 47 LYS 47 33 33 LYS LYS A . n A 1 48 LEU 48 34 34 LEU LEU A . n A 1 49 TYR 49 35 35 TYR TYR A . n A 1 50 GLN 50 36 36 GLN GLN A . n A 1 51 ILE 51 37 37 ILE ILE A . n A 1 52 GLY 52 38 38 GLY GLY A . n A 1 53 LYS 53 39 39 LYS LYS A . n A 1 54 ARG 54 40 40 ARG ARG A . n A 1 55 LEU 55 41 41 LEU LEU A . n A 1 56 PHE 56 42 42 PHE PHE A . n A 1 57 TRP 57 43 43 TRP TRP A . n A 1 58 ASP 58 44 44 ASP ASP A . n A 1 59 PRO 59 45 45 PRO PRO A . n A 1 60 ALA 60 46 46 ALA ALA A . n A 1 61 LYS 61 47 47 LYS LYS A . n A 1 62 ILE 62 48 48 ILE ILE A . n A 1 63 ASP 63 49 49 ASP ASP A . n A 1 64 PHE 64 50 50 PHE PHE A . n A 1 65 SER 65 51 51 SER SER A . n A 1 66 LYS 66 52 52 LYS LYS A . n A 1 67 ASP 67 53 53 ASP ASP A . n A 1 68 LYS 68 54 54 LYS LYS A . n A 1 69 GLU 69 55 55 GLU GLU A . n A 1 70 ASP 70 56 56 ASP ASP A . n A 1 71 TRP 71 57 57 TRP TRP A . n A 1 72 LYS 72 58 58 LYS LYS A . n A 1 73 LYS 73 59 59 LYS LYS A . n A 1 74 LEU 74 60 60 LEU LEU A . n A 1 75 SER 75 61 61 SER SER A . n A 1 76 LYS 76 62 62 LYS LYS A . n A 1 77 ASP 77 63 63 ASP ASP A . n A 1 78 GLU 78 64 64 GLU GLU A . n A 1 79 LYS 79 65 65 LYS LYS A . n A 1 80 ASN 80 66 66 ASN ASN A . n A 1 81 TYR 81 67 67 TYR TYR A . n A 1 82 LEU 82 68 68 LEU LEU A . n A 1 83 LEU 83 69 69 LEU LEU A . n A 1 84 ASN 84 70 70 ASN ASN A . n A 1 85 ILE 85 71 71 ILE ILE A . n A 1 86 VAL 86 72 72 VAL VAL A . n A 1 87 SER 87 73 73 SER SER A . n A 1 88 LEU 88 74 74 LEU LEU A . n A 1 89 PHE 89 75 75 PHE PHE A . n A 1 90 MET 90 76 76 MET MET A . n A 1 91 ALA 91 77 77 ALA ALA A . n A 1 92 GLY 92 78 78 GLY GLY A . n A 1 93 GLU 93 79 79 GLU GLU A . n A 1 94 GLU 94 80 80 GLU GLU A . n A 1 95 ALA 95 81 81 ALA ALA A . n A 1 96 VAL 96 82 82 VAL VAL A . n A 1 97 ALA 97 83 83 ALA ALA A . n A 1 98 VAL 98 84 84 VAL VAL A . n A 1 99 ASP 99 85 85 ASP ASP A . n A 1 100 ILE 100 86 86 ILE ILE A . n A 1 101 THR 101 87 87 THR THR A . n A 1 102 PRO 102 88 88 PRO PRO A . n A 1 103 LEU 103 89 89 LEU LEU A . n A 1 104 ILE 104 90 90 ILE ILE A . n A 1 105 SER 105 91 91 SER SER A . n A 1 106 THR 106 92 92 THR THR A . n A 1 107 MET 107 93 93 MET MET A . n A 1 108 ILE 108 94 94 ILE ILE A . n A 1 109 ASN 109 95 95 ASN ASN A . n A 1 110 GLU 110 96 96 GLU GLU A . n A 1 111 GLY 111 97 97 GLY GLY A . n A 1 112 ARG 112 98 98 ARG ARG A . n A 1 113 VAL 113 99 99 VAL VAL A . n A 1 114 GLU 114 100 100 GLU GLU A . n A 1 115 ASP 115 101 101 ASP ASP A . n A 1 116 VAL 116 102 102 VAL VAL A . n A 1 117 ILE 117 103 103 ILE ILE A . n A 1 118 TYR 118 104 104 TYR TYR A . n A 1 119 LEU 119 105 105 LEU LEU A . n A 1 120 GLU 120 106 106 GLU GLU A . n A 1 121 GLN 121 107 107 GLN GLN A . n A 1 122 PHE 122 108 108 PHE PHE A . n A 1 123 ALA 123 109 109 ALA ALA A . n A 1 124 PHE 124 110 110 PHE PHE A . n A 1 125 GLU 125 111 111 GLU GLU A . n A 1 126 GLU 126 112 112 GLU GLU A . n A 1 127 ALA 127 113 113 ALA ALA A . n A 1 128 LYS 128 114 114 LYS LYS A . n A 1 129 HIS 129 115 115 HIS HIS A . n A 1 130 ALA 130 116 116 ALA ALA A . n A 1 131 GLU 131 117 117 GLU GLU A . n A 1 132 ALA 132 118 118 ALA ALA A . n A 1 133 PHE 133 119 119 PHE PHE A . n A 1 134 ARG 134 120 120 ARG ARG A . n A 1 135 ARG 135 121 121 ARG ARG A . n A 1 136 PHE 136 122 122 PHE PHE A . n A 1 137 CYS 137 123 123 CYS CYS A . n A 1 138 ASP 138 124 124 ASP ASP A . n A 1 139 SER 139 125 125 SER SER A . n A 1 140 LEU 140 126 126 LEU LEU A . n A 1 141 GLU 141 127 127 GLU GLU A . n A 1 142 ILE 142 128 128 ILE ILE A . n A 1 143 ASN 143 129 129 ASN ASN A . n A 1 144 ASP 144 130 130 ASP ASP A . n A 1 145 ASP 145 131 131 ASP ASP A . n A 1 146 LEU 146 132 132 LEU LEU A . n A 1 147 THR 147 133 133 THR THR A . n A 1 148 ILE 148 134 134 ILE ILE A . n A 1 149 PHE 149 135 135 PHE PHE A . n A 1 150 THR 150 136 136 THR THR A . n A 1 151 THR 151 137 137 THR THR A . n A 1 152 GLU 152 138 138 GLU GLU A . n A 1 153 TYR 153 139 139 TYR TYR A . n A 1 154 ASN 154 140 140 ASN ASN A . n A 1 155 PRO 155 141 141 PRO PRO A . n A 1 156 TRP 156 142 142 TRP TRP A . n A 1 157 TYR 157 143 143 TYR TYR A . n A 1 158 GLN 158 144 144 GLN GLN A . n A 1 159 LYS 159 145 145 LYS LYS A . n A 1 160 ILE 160 146 146 ILE ILE A . n A 1 161 PHE 161 147 147 PHE PHE A . n A 1 162 TYR 162 148 148 TYR TYR A . n A 1 163 GLU 163 149 149 GLU GLU A . n A 1 164 GLU 164 150 150 GLU GLU A . n A 1 165 LEU 165 151 151 LEU LEU A . n A 1 166 PRO 166 152 152 PRO PRO A . n A 1 167 SER 167 153 153 SER SER A . n A 1 168 VAL 168 154 154 VAL VAL A . n A 1 169 MET 169 155 155 MET MET A . n A 1 170 TRP 170 156 156 TRP TRP A . n A 1 171 LYS 171 157 157 LYS LYS A . n A 1 172 LEU 172 158 158 LEU LEU A . n A 1 173 ARG 173 159 159 ARG ARG A . n A 1 174 VAL 174 160 160 VAL VAL A . n A 1 175 ASP 175 161 161 ASP ASP A . n A 1 176 PRO 176 162 162 PRO PRO A . n A 1 177 SER 177 163 163 SER SER A . n A 1 178 PRO 178 164 164 PRO PRO A . n A 1 179 GLU 179 165 165 GLU GLU A . n A 1 180 ASN 180 166 166 ASN ASN A . n A 1 181 LEU 181 167 167 LEU LEU A . n A 1 182 ALA 182 168 168 ALA ALA A . n A 1 183 VAL 183 169 169 VAL VAL A . n A 1 184 ALA 184 170 170 ALA ALA A . n A 1 185 VAL 185 171 171 VAL VAL A . n A 1 186 THR 186 172 172 THR THR A . n A 1 187 THR 187 173 173 THR THR A . n A 1 188 TYR 188 174 174 TYR TYR A . n A 1 189 ASN 189 175 175 ASN ASN A . n A 1 190 LEU 190 176 176 LEU LEU A . n A 1 191 TYR 191 177 177 TYR TYR A . n A 1 192 VAL 192 178 178 VAL VAL A . n A 1 193 GLU 193 179 179 GLU GLU A . n A 1 194 GLY 194 180 180 GLY GLY A . n A 1 195 VAL 195 181 181 VAL VAL A . n A 1 196 ALA 196 182 182 ALA ALA A . n A 1 197 ALA 197 183 183 ALA ALA A . n A 1 198 GLU 198 184 184 GLU GLU A . n A 1 199 SER 199 185 185 SER SER A . n A 1 200 GLY 200 186 186 GLY GLY A . n A 1 201 TYR 201 187 187 TYR TYR A . n A 1 202 LYS 202 188 188 LYS LYS A . n A 1 203 THR 203 189 189 THR THR A . n A 1 204 PHE 204 190 190 PHE PHE A . n A 1 205 LYS 205 191 191 LYS LYS A . n A 1 206 HIS 206 192 192 HIS HIS A . n A 1 207 ILE 207 193 193 ILE ILE A . n A 1 208 PHE 208 194 194 PHE PHE A . n A 1 209 ASN 209 195 195 ASN ASN A . n A 1 210 SER 210 196 196 SER SER A . n A 1 211 LEU 211 197 197 LEU LEU A . n A 1 212 ASN 212 198 198 ASN ASN A . n A 1 213 ILE 213 199 199 ILE ILE A . n A 1 214 MET 214 200 200 MET MET A . n A 1 215 PRO 215 201 201 PRO PRO A . n A 1 216 GLY 216 202 202 GLY GLY A . n A 1 217 LEU 217 203 203 LEU LEU A . n A 1 218 SER 218 204 204 SER SER A . n A 1 219 LYS 219 205 205 LYS LYS A . n A 1 220 THR 220 206 206 THR THR A . n A 1 221 VAL 221 207 207 VAL VAL A . n A 1 222 ASN 222 208 208 ASN ASN A . n A 1 223 LEU 223 209 209 LEU LEU A . n A 1 224 ILE 224 210 210 ILE ILE A . n A 1 225 ALA 225 211 211 ALA ALA A . n A 1 226 THR 226 212 212 THR THR A . n A 1 227 ASP 227 213 213 ASP ASP A . n A 1 228 GLU 228 214 214 GLU GLU A . n A 1 229 SER 229 215 215 SER SER A . n A 1 230 ARG 230 216 216 ARG ARG A . n A 1 231 HIS 231 217 217 HIS HIS A . n A 1 232 ILE 232 218 218 ILE ILE A . n A 1 233 ALA 233 219 219 ALA ALA A . n A 1 234 TYR 234 220 220 TYR TYR A . n A 1 235 GLY 235 221 221 GLY GLY A . n A 1 236 THR 236 222 222 THR THR A . n A 1 237 TYR 237 223 223 TYR TYR A . n A 1 238 LEU 238 224 224 LEU LEU A . n A 1 239 ILE 239 225 225 ILE ILE A . n A 1 240 THR 240 226 226 THR THR A . n A 1 241 ARG 241 227 227 ARG ARG A . n A 1 242 LEU 242 228 228 LEU LEU A . n A 1 243 ILE 243 229 229 ILE ILE A . n A 1 244 VAL 244 230 230 VAL VAL A . n A 1 245 GLU 245 231 231 GLU GLU A . n A 1 246 ASN 246 232 232 ASN ASN A . n A 1 247 GLY 247 233 233 GLY GLY A . n A 1 248 GLU 248 234 234 GLU GLU A . n A 1 249 SER 249 235 235 SER SER A . n A 1 250 ILE 250 236 236 ILE ILE A . n A 1 251 TYR 251 237 237 TYR TYR A . n A 1 252 ARG 252 238 238 ARG ARG A . n A 1 253 LYS 253 239 239 LYS LYS A . n A 1 254 ALA 254 240 240 ALA ALA A . n A 1 255 ILE 255 241 241 ILE ILE A . n A 1 256 GLU 256 242 242 GLU GLU A . n A 1 257 GLN 257 243 243 GLN GLN A . n A 1 258 PHE 258 244 244 PHE PHE A . n A 1 259 ASN 259 245 245 ASN ASN A . n A 1 260 LYS 260 246 246 LYS LYS A . n A 1 261 LEU 261 247 247 LEU LEU A . n A 1 262 VAL 262 248 248 VAL VAL A . n A 1 263 GLY 263 249 249 GLY GLY A . n A 1 264 ILE 264 250 ? ? ? A . n A 1 265 VAL 265 251 ? ? ? A . n A 1 266 GLN 266 252 ? ? ? A . n A 1 267 SER 267 253 ? ? ? A . n A 1 268 LEU 268 254 ? ? ? A . n A 1 269 THR 269 255 ? ? ? A . n A 1 270 ARG 270 256 ? ? ? A . n A 1 271 PRO 271 257 ? ? ? A . n A 1 272 LEU 272 258 ? ? ? A . n A 1 273 ALA 273 259 ? ? ? A . n A 1 274 LYS 274 260 ? ? ? A . n A 1 275 LEU 275 261 261 LEU LEU A . n A 1 276 PRO 276 262 262 PRO PRO A . n A 1 277 PHE 277 263 263 PHE PHE A . n A 1 278 GLY 278 264 264 GLY GLY A . n A 1 279 LEU 279 265 265 LEU LEU A . n A 1 280 THR 280 266 266 THR THR A . n A 1 281 PRO 281 267 267 PRO PRO A . n A 1 282 ASP 282 268 268 ASP ASP A . n A 1 283 PHE 283 269 269 PHE PHE A . n A 1 284 THR 284 270 270 THR THR A . n A 1 285 ILE 285 271 271 ILE ILE A . n A 1 286 GLU 286 272 272 GLU GLU A . n A 1 287 ASN 287 273 273 ASN ASN A . n A 1 288 ARG 288 274 274 ARG ARG A . n A 1 289 LYS 289 275 275 LYS LYS A . n A 1 290 GLN 290 276 276 GLN GLN A . n A 1 291 LEU 291 277 277 LEU LEU A . n A 1 292 VAL 292 278 278 VAL VAL A . n A 1 293 ASN 293 279 279 ASN ASN A . n A 1 294 ALA 294 280 280 ALA ALA A . n A 1 295 ARG 295 281 281 ARG ARG A . n A 1 296 LEU 296 282 282 LEU LEU A . n A 1 297 THR 297 283 283 THR THR A . n A 1 298 VAL 298 284 284 VAL VAL A . n A 1 299 ILE 299 285 285 ILE ILE A . n A 1 300 GLU 300 286 286 GLU GLU A . n A 1 301 ARG 301 287 287 ARG ARG A . n A 1 302 ALA 302 288 288 ALA ALA A . n A 1 303 LEU 303 289 289 LEU LEU A . n A 1 304 LYS 304 290 290 LYS LYS A . n A 1 305 MET 305 291 291 MET MET A . n A 1 306 THR 306 292 292 THR THR A . n A 1 307 PRO 307 293 293 PRO PRO A . n A 1 308 GLU 308 294 294 GLU GLU A . n A 1 309 GLN 309 295 295 GLN GLN A . n A 1 310 VAL 310 296 296 VAL VAL A . n A 1 311 LYS 311 297 297 LYS LYS A . n A 1 312 SER 312 298 298 SER SER A . n A 1 313 PHE 313 299 ? ? ? A . n A 1 314 SER 314 300 ? ? ? A . n A 1 315 PRO 315 301 ? ? ? A . n A 1 316 LYS 316 302 ? ? ? A . n A 1 317 ASP 317 303 ? ? ? A . n A 1 318 LEU 318 304 ? ? ? A . n A 1 319 GLY 319 305 ? ? ? A . n A 1 320 VAL 320 306 ? ? ? A . n A 1 321 ILE 321 307 ? ? ? A . n A 1 322 GLU 322 308 ? ? ? A . n A 1 323 GLU 323 309 ? ? ? A . n A 1 324 ILE 324 310 ? ? ? A . n A 1 325 LYS 325 311 ? ? ? A . n A 1 326 LEU 326 312 ? ? ? A . n A 1 327 ASP 327 313 ? ? ? A . n A 1 328 LYS 328 314 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN3 1 401 401 MN3 MN3 A . C 3 FE 1 402 402 FE FE A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5360 ? 1 MORE -67 ? 1 'SSA (A^2)' 22930 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 93 ? A GLU 79 ? 1_555 MN ? B MN3 . ? A MN3 401 ? 1_555 OE1 ? A GLU 126 ? A GLU 112 ? 1_555 60.5 ? 2 OE1 ? A GLU 93 ? A GLU 79 ? 1_555 MN ? B MN3 . ? A MN3 401 ? 1_555 ND1 ? A HIS 129 ? A HIS 115 ? 1_555 78.0 ? 3 OE1 ? A GLU 126 ? A GLU 112 ? 1_555 MN ? B MN3 . ? A MN3 401 ? 1_555 ND1 ? A HIS 129 ? A HIS 115 ? 1_555 91.1 ? 4 OE1 ? A GLU 93 ? A GLU 79 ? 1_555 MN ? B MN3 . ? A MN3 401 ? 1_555 OE2 ? A GLU 228 ? A GLU 214 ? 1_555 151.0 ? 5 OE1 ? A GLU 126 ? A GLU 112 ? 1_555 MN ? B MN3 . ? A MN3 401 ? 1_555 OE2 ? A GLU 228 ? A GLU 214 ? 1_555 106.6 ? 6 ND1 ? A HIS 129 ? A HIS 115 ? 1_555 MN ? B MN3 . ? A MN3 401 ? 1_555 OE2 ? A GLU 228 ? A GLU 214 ? 1_555 130.2 ? 7 OE2 ? A GLU 126 ? A GLU 112 ? 1_555 FE ? C FE . ? A FE 402 ? 1_555 OE2 ? A GLU 228 ? A GLU 214 ? 1_555 121.3 ? 8 OE2 ? A GLU 126 ? A GLU 112 ? 1_555 FE ? C FE . ? A FE 402 ? 1_555 ND1 ? A HIS 231 ? A HIS 217 ? 1_555 82.5 ? 9 OE2 ? A GLU 228 ? A GLU 214 ? 1_555 FE ? C FE . ? A FE 402 ? 1_555 ND1 ? A HIS 231 ? A HIS 217 ? 1_555 112.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-04-24 2 'Structure model' 1 1 2019-09-04 3 'Structure model' 1 2 2019-09-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' em_image_scans 4 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_volume' 2 3 'Structure model' '_citation.page_first' 3 3 'Structure model' '_citation.page_last' 4 3 'Structure model' '_citation.pdbx_database_id_PubMed' 5 3 'Structure model' '_citation.title' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.14_3260: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.8.2 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? 0.8.9 5 # _em_3d_fitting.entry_id 6QRZ _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.pdb_entry_id 3EE4 # _em_3d_reconstruction.entry_id 6QRZ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution 3.0 _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 3.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'R2-like ligand-binding oxidase' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 6QRZ _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 50.0 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source LAB6 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'JEOL 2100' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'GATAN 914 HIGH TILT LIQUID NITROGEN CRYO TRANSFER TOMOGRAPHY HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 6QRZ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6QRZ _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 LEU _pdbx_validate_close_contact.auth_seq_id_1 74 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OH _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 TYR _pdbx_validate_close_contact.auth_seq_id_2 143 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 22 ? ? -96.57 -78.19 2 1 ILE A 128 ? ? -64.39 99.81 3 1 THR A 137 ? ? -139.70 -47.83 4 1 PRO A 162 ? ? -86.03 48.82 5 1 TYR A 174 ? ? -135.30 -53.73 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -13 ? A MET 1 2 1 Y 1 A ALA -12 ? A ALA 2 3 1 Y 1 A HIS -11 ? A HIS 3 4 1 Y 1 A HIS -10 ? A HIS 4 5 1 Y 1 A HIS -9 ? A HIS 5 6 1 Y 1 A HIS -8 ? A HIS 6 7 1 Y 1 A HIS -7 ? A HIS 7 8 1 Y 1 A HIS -6 ? A HIS 8 9 1 Y 1 A VAL -5 ? A VAL 9 10 1 Y 1 A ASP -4 ? A ASP 10 11 1 Y 1 A ASP -3 ? A ASP 11 12 1 Y 1 A ASP -2 ? A ASP 12 13 1 Y 1 A ASP -1 ? A ASP 13 14 1 Y 1 A LYS 0 ? A LYS 14 15 1 Y 1 A MET 1 ? A MET 15 16 1 Y 1 A LYS 2 ? A LYS 16 17 1 Y 1 A GLU 3 ? A GLU 17 18 1 Y 1 A LYS 4 ? A LYS 18 19 1 Y 1 A LEU 5 ? A LEU 19 20 1 Y 1 A LEU 6 ? A LEU 20 21 1 Y 1 A GLU 7 ? A GLU 21 22 1 Y 1 A PHE 8 ? A PHE 22 23 1 Y 1 A ARG 9 ? A ARG 23 24 1 Y 1 A SER 10 ? A SER 24 25 1 Y 1 A GLU 11 ? A GLU 25 26 1 Y 1 A GLY 12 ? A GLY 26 27 1 Y 1 A VAL 13 ? A VAL 27 28 1 Y 1 A ILE 250 ? A ILE 264 29 1 Y 1 A VAL 251 ? A VAL 265 30 1 Y 1 A GLN 252 ? A GLN 266 31 1 Y 1 A SER 253 ? A SER 267 32 1 Y 1 A LEU 254 ? A LEU 268 33 1 Y 1 A THR 255 ? A THR 269 34 1 Y 1 A ARG 256 ? A ARG 270 35 1 Y 1 A PRO 257 ? A PRO 271 36 1 Y 1 A LEU 258 ? A LEU 272 37 1 Y 1 A ALA 259 ? A ALA 273 38 1 Y 1 A LYS 260 ? A LYS 274 39 1 Y 1 A PHE 299 ? A PHE 313 40 1 Y 1 A SER 300 ? A SER 314 41 1 Y 1 A PRO 301 ? A PRO 315 42 1 Y 1 A LYS 302 ? A LYS 316 43 1 Y 1 A ASP 303 ? A ASP 317 44 1 Y 1 A LEU 304 ? A LEU 318 45 1 Y 1 A GLY 305 ? A GLY 319 46 1 Y 1 A VAL 306 ? A VAL 320 47 1 Y 1 A ILE 307 ? A ILE 321 48 1 Y 1 A GLU 308 ? A GLU 322 49 1 Y 1 A GLU 309 ? A GLU 323 50 1 Y 1 A ILE 310 ? A ILE 324 51 1 Y 1 A LYS 311 ? A LYS 325 52 1 Y 1 A LEU 312 ? A LEU 326 53 1 Y 1 A ASP 313 ? A ASP 327 54 1 Y 1 A LYS 314 ? A LYS 328 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 90 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.length_a 63.305 _em_3d_crystal_entity.length_b 108.925 _em_3d_crystal_entity.length_c 48.165 _em_3d_crystal_entity.space_group_name 'P 21 21 2' _em_3d_crystal_entity.space_group_num 18 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 44 '%(w/v)' ? 'polyethylene glycol 400' 1 2 0.2 M Li2SO4 'lithium sulfate' 1 3 0.1 M C2H3NaO2 'sodium acetate' # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere ? _em_crystal_formation.details ? _em_crystal_formation.instrument ? _em_crystal_formation.lipid_mixture ? _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature ? _em_crystal_formation.time ? _em_crystal_formation.time_unit ? # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 1830 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 62.8 _em_diffraction_shell.high_resolution 29.00 _em_diffraction_shell.low_resolution 3.00 _em_diffraction_shell.multiplicity 32.4 _em_diffraction_shell.num_structure_factors 4452 _em_diffraction_shell.phase_residual 1 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 62.8 _em_diffraction_stats.high_resolution 3.00 _em_diffraction_stats.num_intensities_measured 144428 _em_diffraction_stats.num_structure_factors 4452 _em_diffraction_stats.overall_phase_error 0 _em_diffraction_stats.overall_phase_residual 1 _em_diffraction_stats.phase_error_rejection_criteria 0 _em_diffraction_stats.r_merge 0.553 _em_diffraction_stats.r_sym 0.553 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 330779 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Sulfolobus acidocaldarius DSM 639' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.16 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model OTHER _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? Coot ? ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 8 _em_specimen.details 'Plate-like micro-crystals grow within 48h at 21C by hanging drop vapour diffusion' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Swedish Research Council' Sweden 2017-04018 1 'Knut and Alice Wallenberg Foundation' Sweden 'Wallenberg Academy Fellows 2017.0275' 2 'Knut and Alice Wallenberg Foundation' Sweden '3DEM-NATUR 2012.0112' 3 'Swedish Research Council' Sweden 'VR Starting Grant 2017-05333' 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (III) ION' MN3 3 'FE (III) ION' FE # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #