data_6QT1 # _entry.id 6QT1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6QT1 pdb_00006qt1 10.2210/pdb6qt1/pdb WWPDB D_1292100815 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-07-17 2 'Structure model' 1 1 2024-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 19 2 'Structure model' '_pdbx_struct_conn_angle.value' 20 2 'Structure model' '_struct_conn.pdbx_dist_value' 21 2 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 22 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 2 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6QT1 _pdbx_database_status.recvd_initial_deposition_date 2019-02-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 6QT2 PDB . unspecified 6QT3 PDB . unspecified 6QT4 PDB . unspecified 6QT5 PDB . unspecified 6QT6 PDB . unspecified 6QT7 PDB . # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bugris, V.' 1 0000-0002-3786-6428 'Harmat, V.' 2 0000-0002-1866-9904 'Ferenc, G.' 3 ? 'Brockhauser, S.' 4 0000-0002-9700-4803 'Carmichael, I.' 5 0000-0002-4651-5080 'Garman, E.F.' 6 0000-0001-8329-5665 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J.Synchrotron Radiat.' _citation.journal_id_ASTM JSYRES _citation.journal_id_CSD ? _citation.journal_id_ISSN 1600-5775 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 26 _citation.language ? _citation.page_first 998 _citation.page_last 1009 _citation.title 'Radiation-damage investigation of a DNA 16-mer.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S160057751900763X _citation.pdbx_database_id_PubMed 31274421 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bugris, V.' 1 ? primary 'Harmat, V.' 2 0000-0002-1866-9904 primary 'Ferenc, G.' 3 ? primary 'Brockhauser, S.' 4 0000-0002-9700-4803 primary 'Carmichael, I.' 5 ? primary 'Garman, E.F.' 6 0000-0001-8329-5665 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*TP*GP*GP*AP*AP*AP*TP*TP*TP*CP*CP*AP*GP*C)-3') ; 4898.191 1 ? ? ? ;"Self complementary model DNA sequence derived from kB33 DNA segment. The present sequence is one nucleotide shorter than that of PDB structure 1SGS. ; 2 non-polymer syn 'CALCIUM ION' 40.078 6 ? ? ? ? 3 water nat water 18.015 38 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DT)(DG)(DG)(DA)(DA)(DA)(DT)(DT)(DT)(DC)(DC)(DA)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCTGGAAATTTCCAGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DT n 1 4 DG n 1 5 DG n 1 6 DA n 1 7 DA n 1 8 DA n 1 9 DT n 1 10 DT n 1 11 DT n 1 12 DC n 1 13 DC n 1 14 DA n 1 15 DG n 1 16 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 2 2 DG DG A . n A 1 2 DC 2 3 3 DC DC A . n A 1 3 DT 3 4 4 DT DT A . n A 1 4 DG 4 5 5 DG DG A . n A 1 5 DG 5 6 6 DG DG A . n A 1 6 DA 6 7 7 DA DA A . n A 1 7 DA 7 8 8 DA DA A . n A 1 8 DA 8 9 9 DA DA A . n A 1 9 DT 9 10 10 DT DT A . n A 1 10 DT 10 11 11 DT DT A . n A 1 11 DT 11 12 12 DT DT A . n A 1 12 DC 12 13 13 DC DC A . n A 1 13 DC 13 14 14 DC DC A . n A 1 14 DA 14 15 15 DA DA A . n A 1 15 DG 15 16 16 DG DG A . n A 1 16 DC 16 17 17 DC DC A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 101 1 CA CA A . C 2 CA 1 102 2 CA CA A . D 2 CA 1 103 3 CA CA A . E 2 CA 1 104 4 CA CA A . F 2 CA 1 105 5 CA CA A . G 2 CA 1 106 7 CA CA A . H 3 HOH 1 201 38 HOH HOH A . H 3 HOH 2 202 16 HOH HOH A . H 3 HOH 3 203 2 HOH HOH A . H 3 HOH 4 204 6 HOH HOH A . H 3 HOH 5 205 32 HOH HOH A . H 3 HOH 6 206 23 HOH HOH A . H 3 HOH 7 207 35 HOH HOH A . H 3 HOH 8 208 21 HOH HOH A . H 3 HOH 9 209 30 HOH HOH A . H 3 HOH 10 210 29 HOH HOH A . H 3 HOH 11 211 22 HOH HOH A . H 3 HOH 12 212 8 HOH HOH A . H 3 HOH 13 213 4 HOH HOH A . H 3 HOH 14 214 31 HOH HOH A . H 3 HOH 15 215 18 HOH HOH A . H 3 HOH 16 216 25 HOH HOH A . H 3 HOH 17 217 24 HOH HOH A . H 3 HOH 18 218 27 HOH HOH A . H 3 HOH 19 219 33 HOH HOH A . H 3 HOH 20 220 1 HOH HOH A . H 3 HOH 21 221 19 HOH HOH A . H 3 HOH 22 222 14 HOH HOH A . H 3 HOH 23 223 5 HOH HOH A . H 3 HOH 24 224 15 HOH HOH A . H 3 HOH 25 225 26 HOH HOH A . H 3 HOH 26 226 17 HOH HOH A . H 3 HOH 27 227 37 HOH HOH A . H 3 HOH 28 228 13 HOH HOH A . H 3 HOH 29 229 3 HOH HOH A . H 3 HOH 30 230 36 HOH HOH A . H 3 HOH 31 231 20 HOH HOH A . H 3 HOH 32 232 11 HOH HOH A . H 3 HOH 33 233 28 HOH HOH A . H 3 HOH 34 234 12 HOH HOH A . H 3 HOH 35 235 34 HOH HOH A . H 3 HOH 36 236 7 HOH HOH A . H 3 HOH 37 237 9 HOH HOH A . H 3 HOH 38 238 10 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.3 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0238 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6QT1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 36.823 _cell.length_a_esd ? _cell.length_b 36.823 _cell.length_b_esd ? _cell.length_c 161.926 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QT1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6QT1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;2 microliter 1.5 mM DNA solution (5mM HEPES pH 6.6) plus 2 microliter 10 mM HEPES pH 6.6 plus 4 microliter reservoir solution, against a reservoir of 1 ml 34% PEG200, 600 mM CaCl2 and 10 mM HEPES pH 8.6. ; _exptl_crystal_grow.pdbx_pH_range 6.6-8.6 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-10-22 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9686 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I24' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9686 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I24 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6QT1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.800 _reflns.d_resolution_low 31.290 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3861 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 92.100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.900 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.400 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.053 _reflns.pdbx_Rpim_I_all 0.030 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.800 1.850 ? ? ? ? ? ? 189 59.000 ? ? ? ? 0.779 ? ? ? ? ? ? ? ? 2.500 ? ? ? ? 0.959 0.549 ? 1 1 0.608 ? 7.840 31.290 ? ? ? ? ? ? 64 96.700 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 2.500 ? ? ? ? 0.041 0.024 ? 2 1 0.996 ? # _refine.aniso_B[1][1] 0.8700 _refine.aniso_B[1][2] 0.4400 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][2] 0.8700 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] -2.8300 _refine.B_iso_max 101.250 _refine.B_iso_mean 49.3450 _refine.B_iso_min 22.560 _refine.correlation_coeff_Fo_to_Fc 0.9630 _refine.correlation_coeff_Fo_to_Fc_free 0.9400 _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED. Water molecules found in close contacts because of two reasons. 1) Being a part of the coordination sphere of Ca2+ ions, possibly in different configurations, could not be fully resolved. 2) Some water molecules are in contact with the phosphate moieties of the DNA, with some contact angles close to 90 degrees, suggesting these may be Mg2+ or Na+ ions - these were modelled as water molecules, because there were no sodium or magnesium salts present during purification and crystallization. ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6QT1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.8000 _refine.ls_d_res_low 31.29 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3671 _refine.ls_number_reflns_R_free 180 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 91.2100 _refine.ls_percent_reflns_R_free 4.7000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2212 _refine.ls_R_factor_R_free 0.2555 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2196 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1SGS _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1710 _refine.pdbx_overall_ESU_R_Free 0.1530 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 7.0710 _refine.overall_SU_ML 0.1230 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8000 _refine_hist.d_res_low 31.29 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 40 _refine_hist.number_atoms_total 371 _refine_hist.pdbx_number_residues_total 16 _refine_hist.pdbx_B_iso_mean_ligand 49.34 _refine_hist.pdbx_B_iso_mean_solvent 46.99 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 325 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.011 0.011 364 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 181 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.914 1.172 560 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.736 3.000 429 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.094 0.200 48 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.025 0.020 192 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 80 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.8010 _refine_ls_shell.d_res_low 1.8470 _refine_ls_shell.number_reflns_all 172 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 11 _refine_ls_shell.number_reflns_R_work 161 _refine_ls_shell.percent_reflns_obs 57.5300 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.1930 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.3110 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6QT1 _struct.title 'Radiation damage study on a 16mer DNA segment, structure at 0.48 MGy dose' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6QT1 _struct_keywords.text 'DNA, radiation damage, global damage, specific damage' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6QT1 _struct_ref.pdbx_db_accession 6QT1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6QT1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 16 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6QT1 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 17 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1700 ? 1 MORE -43 ? 1 'SSA (A^2)' 6180 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 17_435 x-y-2/3,-y-4/3,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -42.5195379247 0.0000000000 0.0000000000 -1.0000000000 107.9506666667 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DA 6 OP1 ? ? ? 1_555 C CA . CA ? ? A DA 7 A CA 102 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc2 metalc ? ? A DA 6 OP1 ? ? ? 1_555 C CA . CA ? ? A DA 7 A CA 102 2_445 ? ? ? ? ? ? ? 2.334 ? ? metalc3 metalc ? ? A DA 6 OP2 ? ? ? 1_555 D CA . CA ? ? A DA 7 A CA 103 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc4 metalc ? ? A DA 6 OP2 ? ? ? 1_555 D CA . CA ? ? A DA 7 A CA 103 2_445 ? ? ? ? ? ? ? 2.291 ? ? metalc5 metalc ? ? A DA 7 OP2 ? ? ? 1_555 G CA . CA ? ? A DA 8 A CA 106 1_555 ? ? ? ? ? ? ? 2.243 ? ? metalc6 metalc ? ? A DG 15 OP1 ? ? ? 1_555 E CA . CA ? ? A DG 16 A CA 104 1_555 ? ? ? ? ? ? ? 2.396 ? ? metalc7 metalc ? ? A DC 16 OP1 ? ? ? 1_555 B CA . CA ? ? A DC 17 A CA 101 1_555 ? ? ? ? ? ? ? 2.199 ? ? metalc8 metalc ? ? A DC 16 OP1 ? ? ? 1_555 B CA . CA ? ? A DC 17 A CA 101 2_445 ? ? ? ? ? ? ? 2.199 ? ? metalc9 metalc ? ? B CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 101 A HOH 223 1_555 ? ? ? ? ? ? ? 2.226 ? ? metalc10 metalc ? ? B CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 101 A HOH 223 2_445 ? ? ? ? ? ? ? 2.226 ? ? metalc11 metalc ? ? C CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 102 A HOH 226 1_555 ? ? ? ? ? ? ? 2.346 ? ? metalc12 metalc ? ? C CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 102 A HOH 226 2_445 ? ? ? ? ? ? ? 2.346 ? ? metalc13 metalc ? ? D CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 103 A HOH 229 1_555 ? ? ? ? ? ? ? 2.769 ? ? metalc14 metalc ? ? D CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 103 A HOH 229 2_445 ? ? ? ? ? ? ? 2.769 ? ? metalc15 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 104 A HOH 209 18_445 ? ? ? ? ? ? ? 2.351 ? ? metalc16 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 104 A HOH 220 3_545 ? ? ? ? ? ? ? 2.343 ? ? metalc17 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O A ? A CA 104 A HOH 222 3_545 ? ? ? ? ? ? ? 2.542 ? ? metalc18 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O A ? A CA 104 A HOH 228 1_555 ? ? ? ? ? ? ? 2.535 ? ? metalc19 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 104 A HOH 234 1_555 ? ? ? ? ? ? ? 2.587 ? ? metalc20 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 105 A HOH 231 17_435 ? ? ? ? ? ? ? 3.176 ? ? metalc21 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 105 A HOH 232 1_555 ? ? ? ? ? ? ? 2.531 ? ? metalc22 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 105 A HOH 233 18_335 ? ? ? ? ? ? ? 3.125 ? ? metalc23 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 105 A HOH 235 1_555 ? ? ? ? ? ? ? 2.455 ? ? metalc24 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 105 A HOH 237 1_555 ? ? ? ? ? ? ? 2.616 ? ? metalc25 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 105 A HOH 238 1_555 ? ? ? ? ? ? ? 2.566 ? ? metalc26 metalc ? ? G CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 106 A HOH 213 2_445 ? ? ? ? ? ? ? 2.480 ? ? metalc27 metalc ? ? G CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 106 A HOH 216 2_445 ? ? ? ? ? ? ? 2.049 ? ? metalc28 metalc ? ? G CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 106 A HOH 225 1_555 ? ? ? ? ? ? ? 2.494 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 16 N3 ? ? A DG 2 A DC 17 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 16 O2 ? ? A DG 2 A DC 17 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 16 N4 ? ? A DG 2 A DC 17 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 15 N1 ? ? A DC 3 A DG 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 15 O6 ? ? A DC 3 A DG 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 15 N2 ? ? A DC 3 A DG 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 14 N1 ? ? A DT 4 A DA 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 14 N6 ? ? A DT 4 A DA 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 13 N3 ? ? A DG 5 A DC 14 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 13 O2 ? ? A DG 5 A DC 14 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 13 N4 ? ? A DG 5 A DC 14 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 12 N3 ? ? A DG 6 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 12 O2 ? ? A DG 6 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 12 N4 ? ? A DG 6 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 11 N3 ? ? A DA 7 A DT 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 11 O4 ? ? A DA 7 A DT 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 10 N3 ? ? A DA 8 A DT 11 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 10 O4 ? ? A DA 8 A DT 11 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 A DT 9 N3 ? ? A DA 9 A DT 10 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 A DT 9 O4 ? ? A DA 9 A DT 10 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 N3 ? ? ? 1_555 A DA 8 N1 ? ? A DT 10 A DA 9 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 9 O4 ? ? ? 1_555 A DA 8 N6 ? ? A DT 10 A DA 9 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 10 N3 ? ? ? 1_555 A DA 7 N1 ? ? A DT 11 A DA 8 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 10 O4 ? ? ? 1_555 A DA 7 N6 ? ? A DT 11 A DA 8 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 11 N3 ? ? ? 1_555 A DA 6 N1 ? ? A DT 12 A DA 7 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 11 O4 ? ? ? 1_555 A DA 6 N6 ? ? A DT 12 A DA 7 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 13 A DG 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 13 A DG 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 13 A DG 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 14 A DG 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 14 A DG 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 13 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 14 A DG 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 14 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 15 A DT 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 14 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 15 A DT 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 16 A DC 3 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 16 A DC 3 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 15 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 16 A DC 3 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 16 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 17 A DG 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 16 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 17 A DG 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 16 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 17 A DG 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DA 6 ? A DA 7 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 OP1 ? A DA 6 ? A DA 7 ? 1_555 0.0 ? 2 OP1 ? A DA 6 ? A DA 7 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? H HOH . ? A HOH 226 ? 1_555 84.1 ? 3 OP1 ? A DA 6 ? A DA 7 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? H HOH . ? A HOH 226 ? 1_555 84.1 ? 4 OP1 ? A DA 6 ? A DA 7 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? H HOH . ? A HOH 226 ? 2_445 169.5 ? 5 OP1 ? A DA 6 ? A DA 7 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? H HOH . ? A HOH 226 ? 2_445 169.5 ? 6 O ? H HOH . ? A HOH 226 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? H HOH . ? A HOH 226 ? 2_445 90.2 ? 7 OP2 ? A DA 6 ? A DA 7 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 OP2 ? A DA 6 ? A DA 7 ? 1_555 0.0 ? 8 OP2 ? A DA 6 ? A DA 7 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 229 ? 1_555 86.0 ? 9 OP2 ? A DA 6 ? A DA 7 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 229 ? 1_555 86.0 ? 10 OP2 ? A DA 6 ? A DA 7 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 229 ? 2_445 171.7 ? 11 OP2 ? A DA 6 ? A DA 7 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 229 ? 2_445 171.7 ? 12 O ? H HOH . ? A HOH 229 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 229 ? 2_445 86.5 ? 13 OP2 ? A DA 7 ? A DA 8 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? H HOH . ? A HOH 213 ? 2_445 88.9 ? 14 OP2 ? A DA 7 ? A DA 8 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? H HOH . ? A HOH 216 ? 2_445 89.4 ? 15 O ? H HOH . ? A HOH 213 ? 2_445 CA ? G CA . ? A CA 106 ? 1_555 O ? H HOH . ? A HOH 216 ? 2_445 89.6 ? 16 OP2 ? A DA 7 ? A DA 8 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? H HOH . ? A HOH 225 ? 1_555 82.0 ? 17 O ? H HOH . ? A HOH 213 ? 2_445 CA ? G CA . ? A CA 106 ? 1_555 O ? H HOH . ? A HOH 225 ? 1_555 170.5 ? 18 O ? H HOH . ? A HOH 216 ? 2_445 CA ? G CA . ? A CA 106 ? 1_555 O ? H HOH . ? A HOH 225 ? 1_555 87.6 ? 19 OP1 ? A DG 15 ? A DG 16 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? H HOH . ? A HOH 209 ? 18_445 88.7 ? 20 OP1 ? A DG 15 ? A DG 16 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? H HOH . ? A HOH 220 ? 3_545 169.4 ? 21 O ? H HOH . ? A HOH 209 ? 18_445 CA ? E CA . ? A CA 104 ? 1_555 O ? H HOH . ? A HOH 220 ? 3_545 91.0 ? 22 OP1 ? A DG 15 ? A DG 16 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O A H HOH . ? A HOH 222 ? 3_545 90.2 ? 23 O ? H HOH . ? A HOH 209 ? 18_445 CA ? E CA . ? A CA 104 ? 1_555 O A H HOH . ? A HOH 222 ? 3_545 77.5 ? 24 O ? H HOH . ? A HOH 220 ? 3_545 CA ? E CA . ? A CA 104 ? 1_555 O A H HOH . ? A HOH 222 ? 3_545 79.4 ? 25 OP1 ? A DG 15 ? A DG 16 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O A H HOH . ? A HOH 228 ? 1_555 83.9 ? 26 O ? H HOH . ? A HOH 209 ? 18_445 CA ? E CA . ? A CA 104 ? 1_555 O A H HOH . ? A HOH 228 ? 1_555 144.6 ? 27 O ? H HOH . ? A HOH 220 ? 3_545 CA ? E CA . ? A CA 104 ? 1_555 O A H HOH . ? A HOH 228 ? 1_555 90.2 ? 28 O A H HOH . ? A HOH 222 ? 3_545 CA ? E CA . ? A CA 104 ? 1_555 O A H HOH . ? A HOH 228 ? 1_555 67.9 ? 29 OP1 ? A DG 15 ? A DG 16 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? H HOH . ? A HOH 234 ? 1_555 103.1 ? 30 O ? H HOH . ? A HOH 209 ? 18_445 CA ? E CA . ? A CA 104 ? 1_555 O ? H HOH . ? A HOH 234 ? 1_555 155.6 ? 31 O ? H HOH . ? A HOH 220 ? 3_545 CA ? E CA . ? A CA 104 ? 1_555 O ? H HOH . ? A HOH 234 ? 1_555 81.3 ? 32 O A H HOH . ? A HOH 222 ? 3_545 CA ? E CA . ? A CA 104 ? 1_555 O ? H HOH . ? A HOH 234 ? 1_555 123.0 ? 33 O A H HOH . ? A HOH 228 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? H HOH . ? A HOH 234 ? 1_555 59.1 ? 34 OP1 ? A DC 16 ? A DC 17 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 OP1 ? A DC 16 ? A DC 17 ? 1_555 0.0 ? 35 OP1 ? A DC 16 ? A DC 17 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? H HOH . ? A HOH 223 ? 1_555 88.6 ? 36 OP1 ? A DC 16 ? A DC 17 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? H HOH . ? A HOH 223 ? 1_555 88.6 ? 37 OP1 ? A DC 16 ? A DC 17 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? H HOH . ? A HOH 223 ? 2_445 102.5 ? 38 OP1 ? A DC 16 ? A DC 17 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? H HOH . ? A HOH 223 ? 2_445 102.5 ? 39 O ? H HOH . ? A HOH 223 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? H HOH . ? A HOH 223 ? 2_445 78.7 ? 40 O ? H HOH . ? A HOH 231 ? 17_435 CA ? F CA . ? A CA 105 ? 1_555 O ? H HOH . ? A HOH 232 ? 1_555 46.8 ? 41 O ? H HOH . ? A HOH 231 ? 17_435 CA ? F CA . ? A CA 105 ? 1_555 O ? H HOH . ? A HOH 233 ? 18_335 89.8 ? 42 O ? H HOH . ? A HOH 232 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? H HOH . ? A HOH 233 ? 18_335 95.4 ? 43 O ? H HOH . ? A HOH 231 ? 17_435 CA ? F CA . ? A CA 105 ? 1_555 O ? H HOH . ? A HOH 235 ? 1_555 86.4 ? 44 O ? H HOH . ? A HOH 232 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? H HOH . ? A HOH 235 ? 1_555 126.0 ? 45 O ? H HOH . ? A HOH 233 ? 18_335 CA ? F CA . ? A CA 105 ? 1_555 O ? H HOH . ? A HOH 235 ? 1_555 112.4 ? 46 O ? H HOH . ? A HOH 231 ? 17_435 CA ? F CA . ? A CA 105 ? 1_555 O ? H HOH . ? A HOH 237 ? 1_555 158.6 ? 47 O ? H HOH . ? A HOH 232 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? H HOH . ? A HOH 237 ? 1_555 112.0 ? 48 O ? H HOH . ? A HOH 233 ? 18_335 CA ? F CA . ? A CA 105 ? 1_555 O ? H HOH . ? A HOH 237 ? 1_555 90.0 ? 49 O ? H HOH . ? A HOH 235 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? H HOH . ? A HOH 237 ? 1_555 113.3 ? 50 O ? H HOH . ? A HOH 231 ? 17_435 CA ? F CA . ? A CA 105 ? 1_555 O ? H HOH . ? A HOH 238 ? 1_555 108.5 ? 51 O ? H HOH . ? A HOH 232 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? H HOH . ? A HOH 238 ? 1_555 62.0 ? 52 O ? H HOH . ? A HOH 233 ? 18_335 CA ? F CA . ? A CA 105 ? 1_555 O ? H HOH . ? A HOH 238 ? 1_555 90.7 ? 53 O ? H HOH . ? A HOH 235 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? H HOH . ? A HOH 238 ? 1_555 152.8 ? 54 O ? H HOH . ? A HOH 237 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? H HOH . ? A HOH 238 ? 1_555 50.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 101 ? 6 'binding site for residue CA A 101' AC2 Software A CA 102 ? 6 'binding site for residue CA A 102' AC3 Software A CA 103 ? 6 'binding site for residue CA A 103' AC4 Software A CA 104 ? 6 'binding site for residue CA A 104' AC5 Software A CA 105 ? 4 'binding site for residue CA A 105' AC6 Software A CA 106 ? 4 'binding site for residue CA A 106' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DC A 16 ? DC A 17 . ? 2_445 ? 2 AC1 6 DC A 16 ? DC A 17 . ? 1_555 ? 3 AC1 6 DC A 16 ? DC A 17 . ? 3_545 ? 4 AC1 6 HOH H . ? HOH A 223 . ? 2_445 ? 5 AC1 6 HOH H . ? HOH A 223 . ? 3_545 ? 6 AC1 6 HOH H . ? HOH A 223 . ? 1_555 ? 7 AC2 6 DA A 6 ? DA A 7 . ? 2_445 ? 8 AC2 6 DA A 6 ? DA A 7 . ? 1_555 ? 9 AC2 6 DA A 6 ? DA A 7 . ? 3_545 ? 10 AC2 6 HOH H . ? HOH A 226 . ? 2_445 ? 11 AC2 6 HOH H . ? HOH A 226 . ? 3_545 ? 12 AC2 6 HOH H . ? HOH A 226 . ? 1_555 ? 13 AC3 6 DA A 6 ? DA A 7 . ? 2_445 ? 14 AC3 6 DA A 6 ? DA A 7 . ? 3_545 ? 15 AC3 6 DA A 6 ? DA A 7 . ? 1_555 ? 16 AC3 6 HOH H . ? HOH A 229 . ? 3_545 ? 17 AC3 6 HOH H . ? HOH A 229 . ? 2_445 ? 18 AC3 6 HOH H . ? HOH A 229 . ? 1_555 ? 19 AC4 6 DG A 15 ? DG A 16 . ? 1_555 ? 20 AC4 6 HOH H . ? HOH A 209 . ? 18_445 ? 21 AC4 6 HOH H . ? HOH A 220 . ? 3_545 ? 22 AC4 6 HOH H . ? HOH A 222 . ? 3_545 ? 23 AC4 6 HOH H . ? HOH A 228 . ? 1_555 ? 24 AC4 6 HOH H . ? HOH A 234 . ? 1_555 ? 25 AC5 4 HOH H . ? HOH A 232 . ? 1_555 ? 26 AC5 4 HOH H . ? HOH A 235 . ? 1_555 ? 27 AC5 4 HOH H . ? HOH A 237 . ? 1_555 ? 28 AC5 4 HOH H . ? HOH A 238 . ? 1_555 ? 29 AC6 4 DA A 7 ? DA A 8 . ? 1_555 ? 30 AC6 4 HOH H . ? HOH A 213 . ? 2_445 ? 31 AC6 4 HOH H . ? HOH A 216 . ? 2_445 ? 32 AC6 4 HOH H . ? HOH A 225 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP1 A DT 4 ? ? O A HOH 201 ? ? 2.01 2 1 OP1 A DA 15 ? ? O A HOH 202 ? ? 2.11 3 1 OP1 A DT 4 ? ? O A HOH 203 ? ? 2.12 4 1 "O3'" A DC 3 ? ? O A HOH 201 ? ? 2.13 5 1 O A HOH 203 ? ? O A HOH 204 ? ? 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 DC _pdbx_validate_symm_contact.auth_seq_id_1 3 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 203 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_445 _pdbx_validate_symm_contact.dist 2.15 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DA _pdbx_validate_rmsd_angle.auth_seq_id_1 8 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DA _pdbx_validate_rmsd_angle.auth_seq_id_2 8 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DA _pdbx_validate_rmsd_angle.auth_seq_id_3 8 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 97.35 _pdbx_validate_rmsd_angle.angle_target_value 102.40 _pdbx_validate_rmsd_angle.angle_deviation -5.05 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.80 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CA 101 ? B CA . 2 1 A CA 102 ? C CA . 3 1 A CA 103 ? D CA . 4 1 A HOH 211 ? H HOH . # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -10.8379 _pdbx_refine_tls.origin_y -20.1414 _pdbx_refine_tls.origin_z 54.1618 _pdbx_refine_tls.T[1][1] 0.0397 _pdbx_refine_tls.T[2][2] 0.1913 _pdbx_refine_tls.T[3][3] 0.1114 _pdbx_refine_tls.T[1][2] 0.0243 _pdbx_refine_tls.T[1][3] -0.0069 _pdbx_refine_tls.T[2][3] -0.0107 _pdbx_refine_tls.L[1][1] 0.0591 _pdbx_refine_tls.L[2][2] 0.1379 _pdbx_refine_tls.L[3][3] 9.8800 _pdbx_refine_tls.L[1][2] 0.0884 _pdbx_refine_tls.L[1][3] -0.1182 _pdbx_refine_tls.L[2][3] -0.3482 _pdbx_refine_tls.S[1][1] 0.0217 _pdbx_refine_tls.S[2][2] 0.0534 _pdbx_refine_tls.S[3][3] -0.0751 _pdbx_refine_tls.S[1][2] 0.0265 _pdbx_refine_tls.S[1][3] 0.0707 _pdbx_refine_tls.S[2][3] 0.1129 _pdbx_refine_tls.S[2][1] 0.0136 _pdbx_refine_tls.S[3][1] 0.1500 _pdbx_refine_tls.S[3][2] -1.1831 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 2 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 17 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CA CA CA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 6QT1 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 16 17_435 -0.139 -0.117 0.089 3.724 -3.281 -1.562 1 A_DG2:DC17_A A 2 ? A 17 ? 19 1 1 A DC 2 1_555 A DG 15 17_435 0.272 -0.216 0.471 -9.300 -11.400 -0.262 2 A_DC3:DG16_A A 3 ? A 16 ? 19 1 1 A DT 3 1_555 A DA 14 17_435 0.044 -0.172 0.151 -4.246 -13.197 5.556 3 A_DT4:DA15_A A 4 ? A 15 ? 20 1 1 A DG 4 1_555 A DC 13 17_435 -0.319 -0.152 -0.080 -1.841 -10.575 -1.816 4 A_DG5:DC14_A A 5 ? A 14 ? 19 1 1 A DG 5 1_555 A DC 12 17_435 -0.069 -0.091 0.004 6.882 0.737 -1.532 5 A_DG6:DC13_A A 6 ? A 13 ? 19 1 1 A DA 6 1_555 A DT 11 17_435 -0.055 -0.162 -0.080 6.282 -11.286 1.147 6 A_DA7:DT12_A A 7 ? A 12 ? 20 1 1 A DA 7 1_555 A DT 10 17_435 -0.123 -0.317 -0.098 7.400 -15.580 0.980 7 A_DA8:DT11_A A 8 ? A 11 ? 20 1 1 A DA 8 1_555 A DT 9 17_435 -0.067 -0.059 -0.165 3.110 -17.853 2.530 8 A_DA9:DT10_A A 9 ? A 10 ? 20 1 1 A DT 9 1_555 A DA 8 17_435 0.067 -0.059 -0.165 -3.110 -17.853 2.530 9 A_DT10:DA9_A A 10 ? A 9 ? 20 1 1 A DT 10 1_555 A DA 7 17_435 0.123 -0.317 -0.098 -7.400 -15.580 0.980 10 A_DT11:DA8_A A 11 ? A 8 ? 20 1 1 A DT 11 1_555 A DA 6 17_435 0.055 -0.162 -0.080 -6.282 -11.286 1.147 11 A_DT12:DA7_A A 12 ? A 7 ? 20 1 1 A DC 12 1_555 A DG 5 17_435 0.069 -0.091 0.004 -6.882 0.737 -1.532 12 A_DC13:DG6_A A 13 ? A 6 ? 19 1 1 A DC 13 1_555 A DG 4 17_435 0.319 -0.152 -0.080 1.841 -10.575 -1.816 13 A_DC14:DG5_A A 14 ? A 5 ? 19 1 1 A DA 14 1_555 A DT 3 17_435 -0.044 -0.172 0.151 4.246 -13.197 5.556 14 A_DA15:DT4_A A 15 ? A 4 ? 20 1 1 A DG 15 1_555 A DC 2 17_435 -0.272 -0.216 0.471 9.300 -11.400 -0.262 15 A_DG16:DC3_A A 16 ? A 3 ? 19 1 1 A DC 16 1_555 A DG 1 17_435 0.139 -0.117 0.089 -3.724 -3.281 -1.562 16 A_DC17:DG2_A A 17 ? A 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 16 17_435 A DC 2 1_555 A DG 15 17_435 -1.057 -0.413 3.582 -4.338 -3.241 36.815 -0.165 1.012 3.700 -5.097 6.824 37.197 1 AA_DG2DC3:DG16DC17_AA A 2 ? A 17 ? A 3 ? A 16 ? 1 A DC 2 1_555 A DG 15 17_435 A DT 3 1_555 A DA 14 17_435 -0.221 -0.276 3.174 3.894 5.387 26.667 -1.851 1.384 3.000 11.454 -8.279 27.468 2 AA_DC3DT4:DA15DG16_AA A 3 ? A 16 ? A 4 ? A 15 ? 1 A DT 3 1_555 A DA 14 17_435 A DG 4 1_555 A DC 13 17_435 -0.137 1.132 3.340 0.395 5.399 36.922 1.023 0.268 3.464 8.469 -0.620 37.303 3 AA_DT4DG5:DC14DA15_AA A 4 ? A 15 ? A 5 ? A 14 ? 1 A DG 4 1_555 A DC 13 17_435 A DG 5 1_555 A DC 12 17_435 1.201 0.539 3.148 -0.132 0.200 31.772 0.950 -2.218 3.146 0.366 0.241 31.773 4 AA_DG5DG6:DC13DC14_AA A 5 ? A 14 ? A 6 ? A 13 ? 1 A DG 5 1_555 A DC 12 17_435 A DA 6 1_555 A DT 11 17_435 -1.398 0.940 3.491 -2.543 1.426 38.620 1.228 1.771 3.604 2.152 3.838 38.726 5 AA_DG6DA7:DT12DC13_AA A 6 ? A 13 ? A 7 ? A 12 ? 1 A DA 6 1_555 A DT 11 17_435 A DA 7 1_555 A DT 10 17_435 0.421 0.773 3.375 1.115 7.367 25.200 -0.421 -0.606 3.472 16.433 -2.486 26.262 6 AA_DA7DA8:DT11DT12_AA A 7 ? A 12 ? A 8 ? A 11 ? 1 A DA 7 1_555 A DT 10 17_435 A DA 8 1_555 A DT 9 17_435 -0.282 0.820 3.398 -1.026 0.937 42.388 1.034 0.282 3.420 1.295 1.419 42.409 7 AA_DA8DA9:DT10DT11_AA A 8 ? A 11 ? A 9 ? A 10 ? 1 A DA 8 1_555 A DT 9 17_435 A DT 9 1_555 A DA 8 17_435 0.000 -0.231 3.422 0.000 2.395 36.013 -0.726 0.000 3.400 3.868 0.000 36.090 8 AA_DA9DT10:DA9DT10_AA A 9 ? A 10 ? A 10 ? A 9 ? 1 A DT 9 1_555 A DA 8 17_435 A DT 10 1_555 A DA 7 17_435 0.282 0.820 3.398 1.026 0.937 42.388 1.034 -0.282 3.420 1.295 -1.419 42.409 9 AA_DT10DT11:DA8DA9_AA A 10 ? A 9 ? A 11 ? A 8 ? 1 A DT 10 1_555 A DA 7 17_435 A DT 11 1_555 A DA 6 17_435 -0.421 0.773 3.375 -1.115 7.367 25.200 -0.421 0.606 3.472 16.433 2.486 26.262 10 AA_DT11DT12:DA7DA8_AA A 11 ? A 8 ? A 12 ? A 7 ? 1 A DT 11 1_555 A DA 6 17_435 A DC 12 1_555 A DG 5 17_435 1.398 0.940 3.491 2.543 1.426 38.620 1.228 -1.771 3.604 2.152 -3.838 38.726 11 AA_DT12DC13:DG6DA7_AA A 12 ? A 7 ? A 13 ? A 6 ? 1 A DC 12 1_555 A DG 5 17_435 A DC 13 1_555 A DG 4 17_435 -1.201 0.539 3.148 0.132 0.200 31.772 0.950 2.218 3.146 0.366 -0.241 31.773 12 AA_DC13DC14:DG5DG6_AA A 13 ? A 6 ? A 14 ? A 5 ? 1 A DC 13 1_555 A DG 4 17_435 A DA 14 1_555 A DT 3 17_435 0.137 1.132 3.340 -0.395 5.399 36.922 1.023 -0.268 3.464 8.469 0.620 37.303 13 AA_DC14DA15:DT4DG5_AA A 14 ? A 5 ? A 15 ? A 4 ? 1 A DA 14 1_555 A DT 3 17_435 A DG 15 1_555 A DC 2 17_435 0.221 -0.276 3.174 -3.894 5.387 26.667 -1.851 -1.384 3.000 11.454 8.279 27.468 14 AA_DA15DG16:DC3DT4_AA A 15 ? A 4 ? A 16 ? A 3 ? 1 A DG 15 1_555 A DC 2 17_435 A DC 16 1_555 A DG 1 17_435 1.057 -0.413 3.582 4.338 -3.241 36.815 -0.165 -1.012 3.700 -5.097 -6.824 37.197 15 AA_DG16DC17:DG2DC3_AA A 16 ? A 3 ? A 17 ? A 2 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'European Molecular Biology Organization' Germany STF_7639 1 'European Union' Hungary VEKOP-2.3.3-15-2017-00018 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1SGS _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6QT1 _atom_sites.fract_transf_matrix[1][1] 0.027157 _atom_sites.fract_transf_matrix[1][2] 0.015679 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031358 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006176 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O P # loop_